Wall clock time and date at job start Fri Apr 10 2020 18:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46975 * 299.99826 * 3 2 1 6 6 H 1.48498 * 109.47170 * 59.99754 * 3 2 1 7 7 C 1.37874 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47136 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47011 * 55.00017 * 11 10 9 13 13 N 1.46895 * 109.47263 * 294.99687 * 11 10 9 14 14 C 1.50702 * 109.46732 * 174.99999 * 11 10 9 15 15 O 1.21283 * 120.00262 * 100.00162 * 14 11 10 16 16 N 1.34777 * 119.99928 * 279.72068 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.50694 * 109.47550 * 180.02562 * 17 16 14 19 19 O 1.20826 * 120.00083 * 0.02562 * 18 17 16 20 20 O 1.34226 * 120.00427 * 179.97438 * 18 17 16 21 21 C 1.45202 * 117.00501 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47029 * 270.00641 * 21 20 18 23 23 C 1.53002 * 109.46874 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47550 * 59.99625 * 23 22 21 25 25 C 1.53002 * 109.46985 * 300.00185 * 24 23 22 26 26 C 1.52992 * 109.47383 * 150.00030 * 21 20 18 27 27 H 0.97000 * 120.00058 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47462 * 59.99624 * 9 7 2 29 29 H 1.09001 * 109.47503 * 299.99203 * 9 7 2 30 30 H 1.08995 * 109.46737 * 59.99327 * 10 9 7 31 31 H 1.09001 * 109.46469 * 300.00172 * 10 9 7 32 32 H 1.00901 * 111.00088 * 300.00693 * 13 11 10 33 33 H 1.00898 * 111.00134 * 63.95809 * 13 11 10 34 34 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 35 35 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 36 36 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 37 37 H 1.08999 * 109.46929 * 30.00077 * 21 20 18 38 38 H 1.09003 * 109.46871 * 299.98990 * 22 21 20 39 39 H 1.08997 * 109.47345 * 59.99603 * 22 21 20 40 40 H 1.08999 * 109.47094 * 299.99442 * 23 22 21 41 41 H 1.09001 * 109.47454 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47204 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47072 * 59.99803 * 24 23 22 44 44 H 1.08999 * 109.46904 * 299.99721 * 25 24 23 45 45 H 1.08997 * 109.46991 * 179.97438 * 25 24 23 46 46 H 1.08996 * 109.47629 * 300.00208 * 26 21 20 47 47 H 1.09003 * 109.47442 * 60.00444 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7879 -5.0072 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4549 -6.1298 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9530 -6.4628 -1.3299 17 6 3.8958 -7.5775 -1.4512 18 6 4.2981 -7.7406 -2.8943 19 8 3.8442 -7.0011 -3.7352 20 8 5.1614 -8.7065 -3.2454 21 6 5.5042 -8.8046 -4.6530 22 6 4.5236 -9.7484 -5.3521 23 6 4.8845 -9.8513 -6.8354 24 6 6.3068 -10.3967 -6.9777 25 6 7.2873 -9.4529 -6.2785 26 6 6.9264 -9.3504 -4.7947 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8904 31 1 2.8719 -3.6043 -0.8895 32 1 1.3491 -5.1021 2.0525 33 1 0.0242 -4.4001 1.3330 34 1 2.6874 -5.9643 -2.1185 35 1 4.7806 -7.3722 -0.8487 36 1 3.4218 -8.4941 -1.1000 37 1 5.4467 -7.8170 -5.1106 38 1 4.5812 -10.7361 -4.8945 39 1 3.5104 -9.3596 -5.2511 40 1 4.8267 -8.8635 -7.2927 41 1 4.1857 -10.5232 -7.3336 42 1 6.5637 -10.4704 -8.0344 43 1 6.3646 -11.3845 -6.5204 44 1 7.2296 -8.4652 -6.7359 45 1 8.3006 -9.8417 -6.3795 46 1 7.6250 -8.6780 -4.2967 47 1 6.9839 -10.3380 -4.3372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818140989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:05 Heat of formation + Delta-G solvation = -179.342406 kcal Electronic energy + Delta-G solvation = -25653.191987 eV Core-core repulsion = 21833.528096 eV Total energy + Delta-G solvation = -3819.663891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.00522 -40.89305 -39.24370 -37.30936 -37.09725 -35.67806 -34.84615 -31.80830 -31.69263 -31.41131 -29.84207 -27.80624 -25.57818 -23.92775 -23.58419 -22.46581 -21.90177 -21.34058 -20.88984 -19.29806 -18.62426 -18.25562 -17.71162 -17.55756 -17.00227 -16.56614 -16.23073 -16.03086 -15.72459 -15.41886 -15.22171 -15.02593 -14.82497 -14.66786 -14.35569 -14.18722 -13.92161 -13.77185 -13.59732 -13.42397 -13.23263 -12.96101 -12.70584 -12.50893 -12.44587 -12.14097 -12.05920 -11.92887 -11.81835 -11.75209 -11.47957 -11.38227 -11.29380 -10.95098 -10.86146 -10.57145 -10.35117 -9.66404 -8.22147 -6.32290 0.93255 1.19105 1.38143 1.39372 1.49936 1.52242 2.16249 2.39430 3.11518 3.34634 3.60481 3.63444 3.72666 3.74393 3.93176 4.09571 4.13357 4.16809 4.19399 4.23492 4.27425 4.30310 4.42448 4.47858 4.60041 4.65504 4.82355 4.82952 4.86533 5.02061 5.07635 5.12974 5.13909 5.15258 5.25535 5.28595 5.33388 5.46334 5.49592 5.65221 5.80266 6.04049 6.20733 6.33553 6.48806 6.49803 6.83315 7.06548 7.36731 8.88848 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.002320 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.861096 B =12065.850436 C =13123.834767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.123 4.123 11 C 0.082 3.918 12 H 0.108 0.892 13 N -0.828 5.828 14 C 0.537 3.463 15 O -0.559 6.559 16 N -0.720 5.720 17 C 0.128 3.872 18 C 0.467 3.533 19 O -0.526 6.526 20 O -0.346 6.346 21 C 0.083 3.917 22 C -0.134 4.134 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.112 4.112 27 H 0.264 0.736 28 H 0.000 1.000 29 H 0.006 0.994 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.346 0.654 33 H 0.354 0.646 34 H 0.416 0.584 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.426 -22.929 -12.959 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.162 4.162 11 C -0.033 4.033 12 H 0.126 0.874 13 N -0.359 5.359 14 C 0.324 3.676 15 O -0.436 6.436 16 N -0.377 5.377 17 C 0.004 3.996 18 C 0.311 3.689 19 O -0.416 6.416 20 O -0.262 6.262 21 C 0.028 3.972 22 C -0.172 4.172 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.019 0.981 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.254 0.746 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.189 -23.804 -12.834 30.088 hybrid contribution 0.210 2.462 -0.192 2.479 sum 13.399 -21.342 -13.026 28.367 Atomic orbital electron populations 1.70066 1.07462 1.27698 1.51420 1.25879 0.95770 1.03025 0.94801 0.85477 0.78989 0.79248 0.77800 1.19028 1.20381 1.20399 1.21647 0.93349 0.92465 1.50708 0.92732 1.18983 0.94058 0.91994 0.95803 1.22153 0.98861 0.93707 1.01525 1.21367 0.94707 0.91054 0.96200 0.87391 1.58755 1.18338 1.55712 1.03143 1.20614 0.80696 0.84156 0.82155 1.90643 1.60859 1.54240 1.37874 1.45725 1.46702 1.34626 1.10625 1.20739 0.96243 0.93151 0.89480 1.23584 0.75995 0.77450 0.91914 1.90684 1.53270 1.44503 1.53102 1.86519 1.57608 1.50762 1.31338 1.23088 0.97037 1.00430 0.76606 1.21945 0.97941 1.00095 0.97170 1.21503 0.98060 1.01879 0.93885 1.21606 0.93546 0.99271 1.01455 1.21547 1.00349 1.00469 0.92928 1.21659 0.92170 1.02656 0.98515 0.92729 0.98145 0.97579 0.93137 0.91910 0.84080 0.83084 0.74605 0.85969 0.85593 0.91028 0.89985 0.92942 0.92263 0.90341 0.90459 0.90922 0.91966 0.89402 0.90900 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.42 4.74 29.85 0.14 1.56 16 10 C -0.12 -4.81 4.78 30.60 0.15 -4.66 16 11 C 0.08 2.75 3.21 44.17 0.14 2.89 16 12 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 13 N -0.83 -28.01 8.94 -171.82 -1.54 -29.54 16 14 C 0.54 16.97 7.08 87.66 0.62 17.59 16 15 O -0.56 -20.22 16.25 -3.04 -0.05 -20.27 16 16 N -0.72 -18.59 5.53 -466.79 -2.58 -21.17 16 17 C 0.13 2.65 6.27 85.63 0.54 3.19 16 18 C 0.47 10.17 8.00 71.23 0.57 10.74 16 19 O -0.53 -14.26 14.89 21.96 0.33 -13.93 16 20 O -0.35 -6.60 9.88 -51.37 -0.51 -7.11 16 21 C 0.08 1.37 2.45 30.59 0.08 1.44 16 22 C -0.13 -1.95 5.56 30.59 0.17 -1.78 16 23 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 24 C -0.12 -0.99 5.92 30.60 0.18 -0.81 16 25 C -0.12 -1.02 5.93 30.61 0.18 -0.83 16 26 C -0.11 -1.31 5.59 30.61 0.17 -1.14 16 27 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.01 0.31 6.87 -2.39 -0.02 0.29 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.35 11.75 8.58 -89.69 -0.77 10.98 16 33 H 0.35 12.19 7.55 -89.70 -0.68 11.51 16 34 H 0.42 10.60 7.44 -92.71 -0.69 9.91 16 35 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 1.42 7.16 -2.39 -0.02 1.41 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.33 383.55 0.62 -66.70 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -1.15 Total: 36.06 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.81 Total: -2.15 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.83 Total: -105.15 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.23 Total: -41.31 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.33 0.62 -66.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818140989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.639 kcal (2) G-P(sol) polarization free energy of solvation -67.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds