Wall clock time and date at job start Fri Apr 10 2020 18:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47152 * 2 1 4 4 C 1.52990 * 109.47543 * 120.00111 * 2 1 3 5 5 C 1.52998 * 109.47543 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47220 * 299.99863 * 5 4 2 7 7 N 1.46497 * 109.47381 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99824 * 155.00058 * 7 6 5 9 9 O 1.21576 * 120.00157 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99353 * 180.02562 * 8 7 6 11 11 C 1.47416 * 125.65197 * 359.97438 * 10 8 7 12 12 C 1.54915 * 104.83222 * 155.91128 * 11 10 8 13 13 C 1.55150 * 101.58155 * 37.00692 * 12 11 10 14 14 O 1.42902 * 110.72125 * 83.04251 * 13 12 11 15 15 C 1.50702 * 110.71940 * 206.13740 * 13 12 11 16 16 H 1.07995 * 119.99831 * 356.76549 * 15 13 12 17 17 C 1.37880 * 119.99776 * 176.49168 * 15 13 12 18 18 N 1.31518 * 119.99950 * 354.18565 * 17 15 13 19 19 Si 1.86802 * 119.99793 * 174.18124 * 17 15 13 20 20 H 1.48503 * 109.46825 * 94.99217 * 19 17 15 21 21 H 1.48502 * 109.46898 * 214.98837 * 19 17 15 22 22 H 1.48497 * 109.47244 * 334.99396 * 19 17 15 23 23 C 1.47317 * 125.61146 * 180.20157 * 10 8 7 24 24 C 1.53001 * 109.46900 * 59.99958 * 6 5 4 25 25 C 1.53006 * 109.47044 * 299.99903 * 24 6 5 26 26 H 1.09000 * 109.47115 * 299.99828 * 1 2 3 27 27 H 1.09001 * 109.46970 * 60.00202 * 1 2 3 28 28 H 1.09004 * 109.46979 * 179.97438 * 1 2 3 29 29 H 0.96705 * 113.99785 * 300.00158 * 3 2 1 30 30 H 1.09004 * 109.47387 * 60.00012 * 4 2 1 31 31 H 1.09005 * 109.47391 * 300.00040 * 4 2 1 32 32 H 1.09004 * 109.47174 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47350 * 59.99960 * 5 4 2 34 34 H 1.08998 * 109.47038 * 300.00288 * 6 5 4 35 35 H 0.97002 * 119.99726 * 335.00778 * 7 6 5 36 36 H 1.09003 * 110.36999 * 37.07370 * 11 10 8 37 37 H 1.09002 * 110.37030 * 274.74555 * 11 10 8 38 38 H 1.09004 * 111.00121 * 278.93593 * 12 11 10 39 39 H 1.09001 * 111.00417 * 155.08680 * 12 11 10 40 40 H 0.96697 * 113.99890 * 182.44319 * 14 13 12 41 41 H 0.96998 * 119.99682 * 179.97438 * 18 17 15 42 42 H 1.08998 * 110.06326 * 61.67614 * 23 10 8 43 43 H 1.09005 * 109.85312 * 300.42256 * 23 10 8 44 44 H 1.09004 * 109.47040 * 59.99877 * 24 6 5 45 45 H 1.09000 * 109.47114 * 179.97438 * 24 6 5 46 46 H 1.08998 * 109.47552 * 300.00073 * 25 24 6 47 47 H 1.09004 * 109.47000 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5700 -0.7206 1.2494 6 6 4.0806 -1.4415 0.0002 7 7 5.5455 -1.4405 0.0002 8 6 6.2201 -2.3962 -0.6694 9 8 5.6128 -3.2588 -1.2737 10 7 7.5679 -2.3954 -0.6689 11 6 8.4264 -1.4135 0.0182 12 6 9.7687 -2.1521 0.2473 13 6 9.8895 -2.9893 -1.0533 14 8 10.4376 -2.2020 -2.1124 15 6 10.7262 -4.2206 -0.8190 16 1 11.1878 -4.3847 0.1435 17 6 10.8978 -5.1405 -1.8317 18 7 10.2408 -5.0035 -2.9627 19 14 12.0635 -6.5812 -1.5971 20 1 11.2987 -7.7659 -1.1312 21 1 12.7267 -6.8965 -2.8879 22 1 13.0915 -6.2267 -0.5859 23 6 8.4265 -3.3734 -1.3592 24 6 3.5706 -0.7203 -1.2490 25 6 2.0405 -0.7209 -1.2493 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7209 1.8654 -0.7651 30 1 1.6768 -1.7489 1.2492 31 1 1.6768 -0.2074 2.1392 32 1 3.9334 -1.2349 2.1392 33 1 3.9330 0.3071 1.2497 34 1 3.7176 -2.4693 -0.0001 35 1 6.0300 -0.7520 0.4821 36 1 7.9845 -1.1251 0.9720 37 1 8.5785 -0.5366 -0.6110 38 1 9.7148 -2.7977 1.1239 39 1 10.5937 -1.4450 0.3349 40 1 10.4991 -2.6678 -2.9576 41 1 10.3618 -5.6504 -3.6753 42 1 8.2497 -3.3333 -2.4340 43 1 8.2204 -4.3762 -0.9849 44 1 3.9335 0.3076 -1.2488 45 1 3.9346 -1.2335 -2.1390 46 1 1.6775 -1.7486 -1.2496 47 1 1.6771 -0.2066 -2.1391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826631947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:22 Heat of formation + Delta-G solvation = -168.888151 kcal Electronic energy + Delta-G solvation = -27282.211511 eV Core-core repulsion = 23463.000950 eV Total energy + Delta-G solvation = -3819.210560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47337 -40.36084 -39.06986 -36.74419 -36.07477 -34.24025 -34.21621 -32.05964 -31.82361 -31.09658 -29.53490 -27.45803 -26.30784 -24.25817 -23.84426 -22.30320 -21.42969 -21.18040 -20.64208 -19.23538 -18.83770 -17.60863 -17.27128 -17.00558 -16.68236 -16.43238 -16.13690 -15.68535 -15.52989 -15.05687 -14.78484 -14.71420 -14.61655 -14.31153 -13.79282 -13.75812 -13.55122 -13.36715 -13.25458 -13.22207 -12.84949 -12.75485 -12.55089 -12.43377 -12.36920 -12.31371 -12.28622 -12.09543 -11.99983 -11.53735 -11.30584 -11.14566 -11.11364 -10.69520 -10.66764 -10.28733 -10.14504 -9.39124 -8.26166 -6.42224 1.40575 1.42930 1.53556 1.67913 2.15598 2.37844 2.99763 3.04996 3.38840 3.71174 3.74166 3.79414 3.93396 4.03219 4.07188 4.17766 4.18470 4.37919 4.40337 4.40589 4.53675 4.58330 4.69106 4.73357 4.74922 4.88431 4.90641 5.00198 5.06506 5.08883 5.13201 5.16903 5.18686 5.26360 5.33860 5.35393 5.37153 5.43621 5.51136 5.63774 5.74195 6.03031 6.19719 6.64594 6.96498 7.08100 7.26334 7.32483 7.58942 8.79422 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.031196 B = 0.002823 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.325836 B = 9917.473093 C =10162.584832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.133 3.867 3 O -0.568 6.568 4 C -0.102 4.102 5 C -0.111 4.111 6 C 0.163 3.837 7 N -0.726 5.726 8 C 0.710 3.290 9 O -0.644 6.644 10 N -0.638 5.638 11 C 0.108 3.892 12 C -0.110 4.110 13 C 0.232 3.768 14 O -0.586 6.586 15 C -0.557 4.557 16 H 0.068 0.932 17 C 0.024 3.976 18 N -0.915 5.915 19 Si 0.964 3.036 20 H -0.281 1.281 21 H -0.281 1.281 22 H -0.264 1.264 23 C 0.145 3.855 24 C -0.120 4.120 25 C -0.137 4.137 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.387 0.613 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.407 0.593 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.374 0.626 41 H 0.269 0.731 42 H 0.026 0.974 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.068 0.932 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.762 12.978 8.468 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.092 3.908 3 O -0.376 6.376 4 C -0.140 4.140 5 C -0.149 4.149 6 C 0.058 3.942 7 N -0.382 5.382 8 C 0.412 3.588 9 O -0.527 6.527 10 N -0.375 5.375 11 C -0.014 4.014 12 C -0.147 4.147 13 C 0.192 3.808 14 O -0.393 6.393 15 C -0.596 4.596 16 H 0.086 0.914 17 C -0.177 4.177 18 N -0.554 5.554 19 Si 0.789 3.211 20 H -0.207 1.207 21 H -0.206 1.206 22 H -0.188 1.188 23 C 0.021 3.979 24 C -0.159 4.159 25 C -0.175 4.175 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.236 0.764 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.222 0.778 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.001 12.544 8.904 22.928 hybrid contribution 0.638 -1.296 -1.444 2.042 sum -16.363 11.249 7.460 21.212 Atomic orbital electron populations 1.22430 0.94308 1.03262 1.03115 1.21153 0.93080 0.82333 0.94198 1.86510 1.77608 1.23162 1.50327 1.21526 0.94148 1.00760 0.97550 1.21650 0.96621 1.01139 0.95527 1.20909 0.77364 0.99527 0.96370 1.45090 1.07232 1.30333 1.55539 1.15782 0.80571 0.82365 0.80105 1.90830 1.68238 1.42146 1.51464 1.48016 1.03230 1.31746 1.54463 1.22389 0.90549 0.91331 0.97144 1.22715 0.96605 0.98864 0.96553 1.19719 0.86697 0.89096 0.85299 1.86098 1.86049 1.44358 1.22783 1.21834 1.32187 1.06137 0.99400 0.91396 1.25847 0.96498 1.00371 0.94985 1.69888 1.41346 1.38076 1.06076 0.85450 0.79007 0.78769 0.77846 1.20658 1.20607 1.18817 1.22376 0.91772 0.89666 0.94088 1.21775 0.96641 1.00654 0.96857 1.22184 0.94194 1.01904 0.99219 0.91437 0.91340 0.91209 0.76393 0.90001 0.89651 0.90814 0.90191 0.92260 0.75671 0.88113 0.91237 0.89849 0.89017 0.77762 0.92158 0.95553 0.95397 0.90863 0.95038 0.91298 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.82 71.98 0.63 -1.20 16 2 C 0.13 1.90 0.98 -10.80 -0.01 1.89 16 3 O -0.57 -8.38 11.63 -148.98 -1.73 -10.11 16 4 C -0.10 -1.55 4.94 30.59 0.15 -1.40 16 5 C -0.11 -2.06 5.25 30.59 0.16 -1.90 16 6 C 0.16 4.25 2.45 44.99 0.11 4.36 16 7 N -0.73 -21.82 5.04 -457.82 -2.31 -24.13 16 8 C 0.71 29.77 8.45 179.05 1.51 31.29 16 9 O -0.64 -32.99 16.33 -3.96 -0.06 -33.05 16 10 N -0.64 -27.10 3.33 -829.01 -2.76 -29.86 16 11 C 0.11 3.58 6.57 86.86 0.57 4.15 16 12 C -0.11 -4.19 6.23 31.99 0.20 -3.99 16 13 C 0.23 11.41 0.85 -10.35 -0.01 11.40 16 14 O -0.59 -29.80 13.08 -148.98 -1.95 -31.75 16 15 C -0.56 -29.57 8.11 25.60 0.21 -29.36 16 16 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 17 C 0.02 1.27 5.25 84.65 0.44 1.72 16 18 N -0.91 -50.83 10.98 21.45 0.24 -50.60 16 19 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 C 0.14 7.48 5.22 86.67 0.45 7.94 16 24 C -0.12 -2.98 5.35 30.60 0.16 -2.82 16 25 C -0.14 -2.44 4.92 30.60 0.15 -2.29 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.39 3.23 9.05 -74.05 -0.67 2.56 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.08 1.46 7.68 -2.39 -0.02 1.44 16 34 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 35 H 0.41 9.75 7.08 -92.71 -0.66 9.09 16 36 H 0.10 2.47 7.30 -2.39 -0.02 2.45 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 3.06 8.04 -2.38 -0.02 3.04 16 39 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.37 19.89 7.53 -74.06 -0.56 19.34 16 41 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.03 1.52 7.90 -2.39 -0.02 1.50 16 43 H 0.03 1.60 7.81 -2.38 -0.02 1.58 16 44 H 0.07 1.71 7.68 -2.39 -0.02 1.70 16 45 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -70.19 367.94 -2.71 -72.90 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: -0.90 Total: 42.25 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 4.74 Total: 19.79 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -4.83 Total: -104.58 kcal Atomic # 8 Polarization: -71.18 SS G_CDS: -3.75 Total: -74.92 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.19 -2.71 -72.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826631947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.987 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds