Wall clock time and date at job start Fri Apr 10 2020 18:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47208 * 2 1 4 4 C 1.52997 * 109.46978 * 240.00282 * 2 1 3 5 5 C 1.53006 * 109.47445 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46711 * 59.99695 * 5 4 2 7 7 N 1.46499 * 109.46799 * 180.02562 * 6 5 4 8 8 C 1.34781 * 119.99874 * 205.00309 * 7 6 5 9 9 O 1.21587 * 119.99893 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00017 * 180.02562 * 8 7 6 11 11 C 1.47018 * 125.64707 * 359.68604 * 10 8 7 12 12 C 1.54333 * 107.26230 * 178.85227 * 11 10 8 13 13 C 1.55148 * 103.02398 * 338.14168 * 12 11 10 14 14 O 1.42903 * 111.00226 * 277.23596 * 13 12 11 15 15 C 1.50698 * 111.04182 * 153.39497 * 13 12 11 16 16 H 1.08008 * 119.99278 * 6.33440 * 15 13 12 17 17 C 1.37875 * 120.00259 * 186.33205 * 15 13 12 18 18 N 1.31507 * 119.99967 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99813 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47388 * 59.99734 * 19 17 15 21 21 H 1.48497 * 109.46910 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46920 * 299.99782 * 19 17 15 23 23 C 1.47425 * 125.64526 * 179.97438 * 10 8 7 24 24 C 1.53000 * 109.47233 * 300.00001 * 6 5 4 25 25 C 1.53001 * 109.46886 * 60.00670 * 24 6 5 26 26 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46698 * 299.99898 * 1 2 3 28 28 H 1.09001 * 109.47142 * 59.99952 * 1 2 3 29 29 H 0.96697 * 113.99519 * 59.99573 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99908 * 4 2 1 31 31 H 1.09002 * 109.47497 * 299.99550 * 4 2 1 32 32 H 1.09002 * 109.46589 * 300.00331 * 5 4 2 33 33 H 1.08996 * 109.47165 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47070 * 60.00376 * 6 5 4 35 35 H 0.97002 * 120.00410 * 24.99527 * 7 6 5 36 36 H 1.09006 * 109.88242 * 298.39749 * 11 10 8 37 37 H 1.09003 * 109.87877 * 59.56391 * 11 10 8 38 38 H 1.09000 * 110.84693 * 219.66796 * 12 11 10 39 39 H 1.08997 * 110.51457 * 96.45611 * 12 11 10 40 40 H 0.96704 * 113.99756 * 173.65021 * 14 13 12 41 41 H 0.97001 * 120.00198 * 180.02562 * 18 17 15 42 42 H 1.08998 * 110.36740 * 322.92663 * 23 10 8 43 43 H 1.09001 * 110.36564 * 85.14360 * 23 10 8 44 44 H 1.09001 * 109.47194 * 179.97438 * 24 6 5 45 45 H 1.08992 * 109.47399 * 300.00166 * 24 6 5 46 46 H 1.09000 * 109.47437 * 180.02562 * 25 24 6 47 47 H 1.09002 * 109.47508 * 59.99571 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0004 7 7 5.5455 -1.4406 -0.0005 8 6 6.2201 -2.3963 0.6689 9 8 5.6127 -3.2590 1.2732 10 7 7.5679 -2.3951 0.6693 11 6 8.4240 -1.4193 -0.0208 12 6 9.8886 -1.7981 0.2848 13 6 9.7690 -2.6355 1.5854 14 8 9.6972 -1.7892 2.7347 15 6 10.9108 -3.6115 1.7074 16 1 11.7228 -3.5843 0.9958 17 6 10.9188 -4.5392 2.7274 18 7 9.9303 -4.5719 3.5942 19 14 12.3344 -5.7484 2.8790 20 1 13.6052 -5.0025 3.0624 21 1 12.1060 -6.6337 4.0492 22 1 12.4169 -6.5710 1.6453 23 6 8.4277 -3.3756 1.3568 24 6 3.5706 -0.7203 1.2488 25 6 2.0406 -0.7209 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 1.8653 0.7650 30 1 1.6766 -0.2073 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9329 0.3071 -1.2498 33 1 3.9333 -1.2349 -2.1395 34 1 3.7175 -2.4694 -0.0002 35 1 6.0301 -0.7522 -0.4824 36 1 8.2443 -1.4628 -1.0951 37 1 8.2171 -0.4160 0.3515 38 1 10.4926 -0.9067 0.4542 39 1 10.3045 -2.3990 -0.5239 40 1 9.5245 -2.2615 3.5607 41 1 9.9361 -5.2243 4.3121 42 1 7.9863 -3.6643 2.3107 43 1 8.5794 -4.2534 0.7287 44 1 3.9339 -1.2342 2.1388 45 1 3.9336 0.3074 1.2486 46 1 1.6772 -0.2067 2.1389 47 1 1.6776 -1.7487 1.2494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826631950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:25 Heat of formation + Delta-G solvation = -144.757700 kcal Electronic energy + Delta-G solvation = -27349.431846 eV Core-core repulsion = 23531.267660 eV Total energy + Delta-G solvation = -3818.164186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15129 -39.17676 -37.37981 -35.60609 -34.17347 -33.12759 -32.19649 -30.99432 -30.87438 -29.73346 -27.73604 -26.20998 -24.72098 -23.01020 -22.59681 -21.29340 -20.13890 -19.60974 -19.27389 -17.54734 -17.00440 -16.47895 -16.15650 -15.48429 -15.09299 -15.02541 -14.87241 -14.38361 -14.17161 -13.93709 -13.64120 -13.20597 -13.06233 -12.86652 -12.77631 -12.47409 -12.39007 -12.08068 -12.01287 -11.71874 -11.62133 -11.52050 -11.40179 -11.13267 -10.99357 -10.79445 -10.59620 -10.54562 -10.46737 -10.35802 -10.15902 -9.94701 -9.51303 -9.31992 -8.71637 -8.65757 -8.31748 -7.62887 -6.24069 -4.33967 3.18494 3.25311 3.30034 3.32068 3.81851 3.99385 4.28306 4.43155 4.48095 4.62711 4.67085 4.88817 5.02336 5.03622 5.23240 5.32144 5.35270 5.37500 5.45695 5.49559 5.56515 5.65929 5.69455 5.77386 5.80478 5.83613 5.92381 6.05816 6.05948 6.09234 6.14184 6.30677 6.39350 6.55211 6.74791 6.92043 6.93132 7.04032 7.28255 7.37311 7.46724 7.73102 7.77839 8.07474 8.61116 8.70831 9.22099 9.33598 9.41773 10.82863 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.031970 B = 0.002859 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.607830 B = 9791.244514 C =10051.908960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.128 3.872 3 O -0.556 6.556 4 C -0.099 4.099 5 C -0.123 4.123 6 C 0.168 3.832 7 N -0.747 5.747 8 C 0.716 3.284 9 O -0.598 6.598 10 N -0.629 5.629 11 C 0.106 3.894 12 C -0.116 4.116 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.538 4.538 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.114 3.886 24 C -0.126 4.126 25 C -0.140 4.140 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.373 0.627 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.392 0.608 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.381 0.619 41 H 0.270 0.730 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.553 9.751 -8.317 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 O -0.362 6.362 4 C -0.137 4.137 5 C -0.161 4.161 6 C 0.062 3.938 7 N -0.403 5.403 8 C 0.418 3.582 9 O -0.477 6.477 10 N -0.366 5.366 11 C -0.018 4.018 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.576 4.576 16 H 0.084 0.916 17 C -0.132 4.132 18 N -0.530 5.530 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.008 4.008 24 C -0.165 4.165 25 C -0.179 4.179 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.220 0.780 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.225 0.775 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.744 9.248 -8.711 20.230 hybrid contribution 0.522 -0.651 0.889 1.219 sum -15.221 8.597 -7.822 19.152 Atomic orbital electron populations 1.22486 0.95966 1.02765 1.02352 1.21227 0.91949 0.82620 0.95474 1.86544 1.77237 1.23098 1.49310 1.21454 0.95513 1.00042 0.96651 1.21728 0.95425 1.01593 0.97333 1.20692 0.78929 1.00074 0.94120 1.45201 1.06339 1.31584 1.57143 1.15546 0.80750 0.81897 0.79978 1.90869 1.67268 1.40149 1.49447 1.47938 1.02831 1.31672 1.54135 1.21916 0.92458 0.92385 0.95040 1.22585 0.93172 1.00777 0.98838 1.19622 0.90554 0.86434 0.82615 1.86102 1.95061 1.39030 1.18924 1.21415 1.06855 1.15946 1.13431 0.91628 1.25079 0.96071 0.96986 0.95101 1.69713 1.31036 1.36532 1.15726 0.86467 0.82186 0.80549 0.77712 1.20029 1.21114 1.20051 1.23102 0.90759 0.90118 0.96796 1.21866 0.94282 1.01312 0.99056 1.22185 0.96673 1.01545 0.97477 0.91531 0.92376 0.91888 0.77987 0.91000 0.90473 0.90597 0.91487 0.89929 0.77486 0.93203 0.92727 0.90828 0.90488 0.76962 0.91975 0.89717 0.92609 0.91220 0.91388 0.91645 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 8.82 37.16 0.33 -0.88 16 2 C 0.13 1.09 0.98 -90.62 -0.09 1.00 16 3 O -0.56 -5.02 11.63 -35.23 -0.41 -5.43 16 4 C -0.10 -0.88 4.94 -26.73 -0.13 -1.01 16 5 C -0.12 -1.29 5.25 -26.73 -0.14 -1.43 16 6 C 0.17 2.26 2.45 -67.93 -0.17 2.09 16 7 N -0.75 -11.72 5.04 -58.67 -0.30 -12.02 16 8 C 0.72 14.90 8.45 -86.91 -0.73 14.17 16 9 O -0.60 -14.68 16.26 5.29 0.09 -14.60 16 10 N -0.63 -13.32 3.33 -176.24 -0.59 -13.90 16 11 C 0.11 1.87 6.15 -3.06 -0.02 1.86 16 12 C -0.12 -2.31 6.13 -24.90 -0.15 -2.46 16 13 C 0.25 6.06 0.87 -89.64 -0.08 5.98 16 14 O -0.58 -14.98 13.16 -35.23 -0.46 -15.44 16 15 C -0.54 -14.07 8.27 -34.44 -0.28 -14.36 16 16 H 0.07 1.67 7.79 -52.48 -0.41 1.27 16 17 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 18 N -0.89 -24.05 10.69 55.43 0.59 -23.46 16 19 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.11 2.81 5.38 -2.54 -0.01 2.80 16 24 C -0.13 -1.62 5.35 -26.73 -0.14 -1.77 16 25 C -0.14 -1.37 4.92 -26.73 -0.13 -1.50 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.37 2.18 9.04 45.56 0.41 2.59 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.82 7.68 -51.93 -0.40 0.42 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 35 H 0.39 5.30 7.59 -40.82 -0.31 4.99 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 40 H 0.38 10.07 7.56 45.56 0.34 10.41 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 43 H 0.06 1.42 8.03 -51.93 -0.42 1.01 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -31.04 368.54 -8.97 -40.01 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -6.58 Total: 17.56 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.85 Total: 6.25 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.29 Total: -49.38 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.79 Total: -35.46 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.04 -8.97 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826631950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.745 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds