Wall clock time and date at job start Fri Apr 10 2020 18:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47208 * 2 1 4 4 C 1.52997 * 109.46978 * 240.00282 * 2 1 3 5 5 C 1.53006 * 109.47445 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46711 * 59.99695 * 5 4 2 7 7 N 1.46499 * 109.46799 * 180.02562 * 6 5 4 8 8 C 1.34781 * 119.99874 * 205.00309 * 7 6 5 9 9 O 1.21587 * 119.99893 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00017 * 180.02562 * 8 7 6 11 11 C 1.47018 * 125.64707 * 359.68604 * 10 8 7 12 12 C 1.54333 * 107.26230 * 178.85227 * 11 10 8 13 13 C 1.55148 * 103.02398 * 338.14168 * 12 11 10 14 14 O 1.42903 * 111.00226 * 277.23596 * 13 12 11 15 15 C 1.50698 * 111.04182 * 153.39497 * 13 12 11 16 16 H 1.08008 * 119.99278 * 6.33440 * 15 13 12 17 17 C 1.37875 * 120.00259 * 186.33205 * 15 13 12 18 18 N 1.31507 * 119.99967 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99813 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47388 * 59.99734 * 19 17 15 21 21 H 1.48497 * 109.46910 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46920 * 299.99782 * 19 17 15 23 23 C 1.47425 * 125.64526 * 179.97438 * 10 8 7 24 24 C 1.53000 * 109.47233 * 300.00001 * 6 5 4 25 25 C 1.53001 * 109.46886 * 60.00670 * 24 6 5 26 26 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46698 * 299.99898 * 1 2 3 28 28 H 1.09001 * 109.47142 * 59.99952 * 1 2 3 29 29 H 0.96697 * 113.99519 * 59.99573 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99908 * 4 2 1 31 31 H 1.09002 * 109.47497 * 299.99550 * 4 2 1 32 32 H 1.09002 * 109.46589 * 300.00331 * 5 4 2 33 33 H 1.08996 * 109.47165 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47070 * 60.00376 * 6 5 4 35 35 H 0.97002 * 120.00410 * 24.99527 * 7 6 5 36 36 H 1.09006 * 109.88242 * 298.39749 * 11 10 8 37 37 H 1.09003 * 109.87877 * 59.56391 * 11 10 8 38 38 H 1.09000 * 110.84693 * 219.66796 * 12 11 10 39 39 H 1.08997 * 110.51457 * 96.45611 * 12 11 10 40 40 H 0.96704 * 113.99756 * 173.65021 * 14 13 12 41 41 H 0.97001 * 120.00198 * 180.02562 * 18 17 15 42 42 H 1.08998 * 110.36740 * 322.92663 * 23 10 8 43 43 H 1.09001 * 110.36564 * 85.14360 * 23 10 8 44 44 H 1.09001 * 109.47194 * 179.97438 * 24 6 5 45 45 H 1.08992 * 109.47399 * 300.00166 * 24 6 5 46 46 H 1.09000 * 109.47437 * 180.02562 * 25 24 6 47 47 H 1.09002 * 109.47508 * 59.99571 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0004 7 7 5.5455 -1.4406 -0.0005 8 6 6.2201 -2.3963 0.6689 9 8 5.6127 -3.2590 1.2732 10 7 7.5679 -2.3951 0.6693 11 6 8.4240 -1.4193 -0.0208 12 6 9.8886 -1.7981 0.2848 13 6 9.7690 -2.6355 1.5854 14 8 9.6972 -1.7892 2.7347 15 6 10.9108 -3.6115 1.7074 16 1 11.7228 -3.5843 0.9958 17 6 10.9188 -4.5392 2.7274 18 7 9.9303 -4.5719 3.5942 19 14 12.3344 -5.7484 2.8790 20 1 13.6052 -5.0025 3.0624 21 1 12.1060 -6.6337 4.0492 22 1 12.4169 -6.5710 1.6453 23 6 8.4277 -3.3756 1.3568 24 6 3.5706 -0.7203 1.2488 25 6 2.0406 -0.7209 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 1.8653 0.7650 30 1 1.6766 -0.2073 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9329 0.3071 -1.2498 33 1 3.9333 -1.2349 -2.1395 34 1 3.7175 -2.4694 -0.0002 35 1 6.0301 -0.7522 -0.4824 36 1 8.2443 -1.4628 -1.0951 37 1 8.2171 -0.4160 0.3515 38 1 10.4926 -0.9067 0.4542 39 1 10.3045 -2.3990 -0.5239 40 1 9.5245 -2.2615 3.5607 41 1 9.9361 -5.2243 4.3121 42 1 7.9863 -3.6643 2.3107 43 1 8.5794 -4.2534 0.7287 44 1 3.9339 -1.2342 2.1388 45 1 3.9336 0.3074 1.2486 46 1 1.6772 -0.2067 2.1389 47 1 1.6776 -1.7487 1.2494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826631950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:24 Heat of formation + Delta-G solvation = -169.247487 kcal Electronic energy + Delta-G solvation = -27350.493803 eV Core-core repulsion = 23531.267660 eV Total energy + Delta-G solvation = -3819.226142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46136 -40.35883 -39.03160 -36.73169 -36.02760 -34.22917 -34.21126 -32.09565 -31.82767 -31.11224 -29.51308 -27.44858 -26.30879 -24.21944 -23.84021 -22.27558 -21.46702 -21.15286 -20.62760 -19.23775 -18.79093 -17.50682 -17.27513 -16.95107 -16.76373 -16.41862 -16.18567 -15.70509 -15.53155 -15.13950 -14.81542 -14.65045 -14.59044 -14.24419 -13.82762 -13.65504 -13.51420 -13.35608 -13.25784 -13.21900 -12.80693 -12.75783 -12.55177 -12.42960 -12.36400 -12.31799 -12.26825 -12.08655 -12.00493 -11.53892 -11.31061 -11.18759 -11.11230 -10.67148 -10.65162 -10.31998 -10.10548 -9.31703 -8.23599 -6.41223 1.43740 1.44042 1.52562 1.70375 2.17540 2.38828 3.02073 3.08043 3.38785 3.71052 3.74169 3.80196 3.93405 4.03504 4.09864 4.18269 4.19508 4.34586 4.39859 4.40462 4.53393 4.61359 4.69314 4.74769 4.77228 4.88167 4.90589 5.00078 5.07186 5.08561 5.10662 5.17342 5.18535 5.31401 5.33811 5.35925 5.37830 5.44377 5.47744 5.64527 5.76283 6.06366 6.21476 6.66042 6.96019 7.09145 7.27813 7.35352 7.60511 8.81351 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.031970 B = 0.002859 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.607830 B = 9791.244514 C =10051.908960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.132 3.868 3 O -0.569 6.569 4 C -0.102 4.102 5 C -0.111 4.111 6 C 0.164 3.836 7 N -0.727 5.727 8 C 0.710 3.290 9 O -0.645 6.645 10 N -0.635 5.635 11 C 0.107 3.893 12 C -0.110 4.110 13 C 0.232 3.768 14 O -0.587 6.587 15 C -0.556 4.556 16 H 0.070 0.930 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.269 1.269 23 C 0.129 3.871 24 C -0.121 4.121 25 C -0.137 4.137 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.387 0.613 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.406 0.594 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.372 0.628 41 H 0.268 0.732 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.029 0.971 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.079 11.361 -10.324 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.092 3.908 3 O -0.376 6.376 4 C -0.139 4.139 5 C -0.149 4.149 6 C 0.059 3.941 7 N -0.382 5.382 8 C 0.412 3.588 9 O -0.527 6.527 10 N -0.371 5.371 11 C -0.015 4.015 12 C -0.148 4.148 13 C 0.192 3.808 14 O -0.395 6.395 15 C -0.594 4.594 16 H 0.088 0.912 17 C -0.176 4.176 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.194 1.194 23 C 0.006 3.994 24 C -0.160 4.160 25 C -0.175 4.175 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.236 0.764 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.242 0.758 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.220 0.780 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.277 10.928 -10.763 22.366 hybrid contribution 0.664 -1.126 1.533 2.014 sum -15.613 9.802 -9.231 20.617 Atomic orbital electron populations 1.22428 0.94259 1.03288 1.03113 1.21164 0.93112 0.82313 0.94203 1.86508 1.77631 1.23190 1.50312 1.21528 0.94117 1.00786 0.97514 1.21649 0.96642 1.01090 0.95525 1.20903 0.77398 0.99526 0.96291 1.45084 1.07229 1.30288 1.55611 1.15780 0.80613 0.82344 0.80080 1.90831 1.68200 1.42245 1.51444 1.47888 1.03181 1.31757 1.54314 1.22109 0.90355 0.91982 0.97039 1.22591 0.95018 1.00685 0.96489 1.19865 0.89773 0.87316 0.83882 1.86094 1.95047 1.39295 1.19033 1.21768 1.07509 1.16546 1.13611 0.91208 1.25857 0.98238 0.98638 0.94905 1.69848 1.32504 1.37041 1.16097 0.85501 0.79414 0.78448 0.77622 1.19371 1.21225 1.19444 1.22630 0.91564 0.90561 0.94690 1.21773 0.96693 1.00586 0.96914 1.22183 0.94138 1.01933 0.99232 0.91158 0.91381 0.91401 0.76410 0.89614 0.89923 0.90314 0.90728 0.92162 0.75767 0.89213 0.91086 0.89611 0.89244 0.77960 0.92228 0.93967 0.94426 0.95174 0.91026 0.90334 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 8.82 71.98 0.63 -1.25 16 2 C 0.13 1.96 0.98 -10.79 -0.01 1.95 16 3 O -0.57 -8.73 11.63 -148.98 -1.73 -10.46 16 4 C -0.10 -1.57 4.94 30.60 0.15 -1.41 16 5 C -0.11 -2.09 5.25 30.60 0.16 -1.93 16 6 C 0.16 4.34 2.45 44.99 0.11 4.45 16 7 N -0.73 -22.27 5.04 -457.80 -2.31 -24.58 16 8 C 0.71 30.01 8.45 179.05 1.51 31.52 16 9 O -0.64 -33.15 16.26 -3.99 -0.06 -33.21 16 10 N -0.63 -26.95 3.33 -829.76 -2.76 -29.71 16 11 C 0.11 3.56 6.15 86.73 0.53 4.09 16 12 C -0.11 -4.19 6.13 31.78 0.19 -4.00 16 13 C 0.23 11.41 0.87 -10.16 -0.01 11.40 16 14 O -0.59 -30.73 13.16 -148.98 -1.96 -32.69 16 15 C -0.56 -29.25 8.27 25.60 0.21 -29.04 16 16 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 17 C 0.02 1.30 5.29 84.66 0.45 1.75 16 18 N -0.92 -51.08 10.69 21.45 0.23 -50.85 16 19 Si 0.97 42.27 29.54 68.60 2.03 44.30 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 C 0.13 6.58 5.38 86.85 0.47 7.05 16 24 C -0.12 -3.11 5.35 30.59 0.16 -2.94 16 25 C -0.14 -2.53 4.92 30.60 0.15 -2.38 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.39 3.49 9.04 -74.06 -0.67 2.82 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.48 7.68 -2.39 -0.02 1.46 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 35 H 0.41 10.08 7.59 -92.71 -0.70 9.38 16 36 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.16 8.03 -2.39 -0.02 3.14 16 40 H 0.37 20.51 7.56 -74.05 -0.56 19.95 16 41 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.04 2.48 7.33 -2.39 -0.02 2.46 16 43 H 0.04 2.00 8.03 -2.39 -0.02 1.98 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.77 7.68 -2.39 -0.02 1.75 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -69.89 368.54 -2.80 -72.69 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -0.95 Total: 45.25 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 4.72 Total: 19.26 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.84 Total: -105.14 kcal Atomic # 8 Polarization: -72.61 SS G_CDS: -3.76 Total: -76.36 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -69.89 -2.80 -72.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826631950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.560 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds