Wall clock time and date at job start Fri Apr 10 2020 18:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 C 1.52998 * 109.47201 * 120.00055 * 2 1 3 5 5 C 1.52999 * 109.47192 * 64.99623 * 4 2 1 6 6 N 1.46500 * 109.47186 * 180.02562 * 5 4 2 7 7 C 1.46497 * 120.00359 * 90.00143 * 6 5 4 8 8 C 1.50702 * 109.47091 * 84.31972 * 7 6 5 9 9 H 1.07997 * 119.99971 * 354.99636 * 8 7 6 10 10 C 1.37879 * 119.99899 * 174.99289 * 8 7 6 11 11 N 1.31516 * 119.99978 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00066 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.46947 * 270.00121 * 12 10 8 14 14 H 1.48504 * 109.47062 * 29.99936 * 12 10 8 15 15 H 1.48499 * 109.47104 * 150.00059 * 12 10 8 16 16 C 1.34778 * 119.99971 * 270.00251 * 6 5 4 17 17 O 1.21281 * 120.00111 * 5.46957 * 16 6 5 18 18 C 1.50699 * 120.00067 * 185.47772 * 16 6 5 19 19 H 1.08997 * 109.41302 * 322.57681 * 18 16 6 20 20 O 1.42973 * 109.41512 * 202.72055 * 18 16 6 21 21 C 1.43236 * 112.98945 * 190.29749 * 20 18 16 22 22 C 1.53021 * 108.67327 * 68.36329 * 21 20 18 23 23 N 1.46093 * 109.92278 * 310.83844 * 22 21 20 24 24 C 1.46496 * 118.73206 * 198.38139 * 23 22 21 25 25 C 1.33875 * 122.53797 * 18.35623 * 23 22 21 26 26 O 1.21288 * 118.83081 * 178.11674 * 25 23 22 27 27 H 1.09002 * 109.47042 * 300.00291 * 1 2 3 28 28 H 1.08999 * 109.47067 * 60.00065 * 1 2 3 29 29 H 1.08996 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47042 * 239.99709 * 2 1 3 31 31 H 1.09006 * 109.46689 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47094 * 299.99456 * 3 2 1 33 33 H 1.08996 * 109.46921 * 59.99914 * 3 2 1 34 34 H 1.09002 * 109.47016 * 304.99998 * 4 2 1 35 35 H 1.08995 * 109.47367 * 185.00049 * 4 2 1 36 36 H 1.09002 * 109.46835 * 60.00263 * 5 4 2 37 37 H 1.09000 * 109.47298 * 299.99988 * 5 4 2 38 38 H 1.09005 * 109.46797 * 324.32198 * 7 6 5 39 39 H 1.09000 * 109.47288 * 204.32119 * 7 6 5 40 40 H 0.96998 * 119.99563 * 179.97438 * 11 10 8 41 41 H 1.09003 * 109.60379 * 188.11918 * 21 20 18 42 42 H 1.09002 * 109.60480 * 308.44172 * 21 20 18 43 43 H 1.08994 * 109.39578 * 70.97308 * 22 21 20 44 44 H 1.08998 * 109.40003 * 190.79533 * 22 21 20 45 45 H 1.08999 * 109.47100 * 89.99751 * 24 23 22 46 46 H 1.09000 * 109.47543 * 209.99646 * 24 23 22 47 47 H 1.08998 * 109.46955 * 330.00200 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 7 2.1230 -2.8859 2.3844 7 6 1.2827 -2.9584 3.5822 8 6 0.3307 -4.1200 3.4585 9 1 0.2934 -4.6926 2.5435 10 6 -0.4927 -4.4520 4.5134 11 7 -1.3232 -5.4660 4.4056 12 14 -0.4288 -3.4613 6.0958 13 1 0.5739 -4.0590 7.0138 14 1 -0.0445 -2.0603 5.7875 15 1 -1.7648 -3.4770 6.7440 16 6 3.3450 -3.4545 2.3832 17 8 4.0800 -3.3104 1.4293 18 6 3.7980 -4.2696 3.5670 19 1 3.4333 -3.8088 4.4850 20 8 5.2268 -4.3156 3.5936 21 6 5.7386 -5.2577 4.5434 22 6 5.4010 -6.6707 4.0627 23 7 3.9872 -6.7498 3.7033 24 6 3.3567 -8.0689 3.6113 25 6 3.2454 -5.6633 3.4553 26 8 2.0864 -5.8084 3.1287 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 2.0698 -2.6550 0.3003 37 1 0.5489 -2.2724 1.1421 38 1 0.7156 -2.0331 3.6847 39 1 1.9131 -3.0973 4.4605 40 1 -1.9022 -5.6997 5.1479 41 1 6.8201 -5.1468 4.6222 42 1 5.2810 -5.0809 5.5168 43 1 6.0099 -6.9117 3.1915 44 1 5.6109 -7.3840 4.8597 45 1 2.9447 -8.3432 4.5824 46 1 2.5559 -8.0382 2.8725 47 1 4.1004 -8.8068 3.3106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826709897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:27 Heat of formation + Delta-G solvation = -120.158494 kcal Electronic energy + Delta-G solvation = -28356.980501 eV Core-core repulsion = 24539.883017 eV Total energy + Delta-G solvation = -3817.097484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11286 -40.38490 -38.75021 -37.84345 -36.56543 -36.19824 -34.35730 -31.83278 -30.95097 -30.06380 -28.99423 -27.97103 -26.97024 -24.75074 -24.57234 -24.21107 -20.97501 -20.69074 -19.99664 -19.16193 -18.97746 -18.27300 -17.79359 -17.23037 -16.53318 -16.49923 -16.19187 -15.98967 -15.49351 -15.38894 -15.19844 -14.84653 -14.66652 -14.57085 -14.21900 -13.99248 -13.73013 -13.68504 -13.56432 -13.36768 -13.13337 -13.03913 -12.90498 -12.66528 -12.54420 -12.24902 -12.14935 -12.12322 -11.76364 -11.73574 -11.54685 -11.46249 -11.37728 -10.86976 -10.58610 -10.32743 -9.68844 -9.49637 -8.11061 -6.07844 1.19182 1.34687 1.37569 1.43788 1.47300 1.97427 2.05182 2.40289 2.80642 3.18239 3.29059 3.46929 3.76697 3.82500 3.92172 3.97429 4.07696 4.15334 4.26573 4.33542 4.40698 4.54654 4.58040 4.59403 4.66152 4.66717 4.75295 4.82762 4.84417 4.86604 4.90811 4.94389 5.05454 5.12457 5.15482 5.33337 5.37829 5.49417 5.52131 5.52549 5.59296 5.73840 6.24413 6.30775 6.54559 6.92282 7.08596 7.19346 7.45408 9.06788 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.006168 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.610456 B = 4538.582595 C = 6251.379520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.116 4.116 5 C 0.121 3.879 6 N -0.578 5.578 7 C 0.214 3.786 8 C -0.479 4.479 9 H 0.036 0.964 10 C 0.013 3.987 11 N -0.946 5.946 12 Si 0.922 3.078 13 H -0.270 1.270 14 H -0.236 1.236 15 H -0.287 1.287 16 C 0.531 3.469 17 O -0.569 6.569 18 C 0.070 3.930 19 H 0.117 0.883 20 O -0.366 6.366 21 C 0.032 3.968 22 C 0.076 3.924 23 N -0.618 5.618 24 C 0.088 3.912 25 C 0.463 3.537 26 O -0.498 6.498 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.158 0.842 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.123 0.877 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.466 4.753 1.254 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.197 4.197 4 C -0.154 4.154 5 C -0.001 4.001 6 N -0.307 5.307 7 C 0.093 3.907 8 C -0.518 4.518 9 H 0.055 0.945 10 C -0.184 4.184 11 N -0.588 5.588 12 Si 0.745 3.255 13 H -0.196 1.196 14 H -0.159 1.159 15 H -0.213 1.213 16 C 0.317 3.683 17 O -0.449 6.449 18 C 0.006 3.994 19 H 0.134 0.866 20 O -0.284 6.284 21 C -0.044 4.044 22 C -0.046 4.046 23 N -0.355 5.355 24 C -0.054 4.054 25 C 0.248 3.752 26 O -0.371 6.371 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.176 0.824 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.192 4.801 0.553 14.050 hybrid contribution -0.700 -0.545 0.928 1.284 sum 12.492 4.256 1.481 13.280 Atomic orbital electron populations 1.21894 0.94678 1.01616 1.02396 1.21039 0.96300 0.96887 0.96800 1.21777 1.00812 0.94655 1.02440 1.21897 1.00607 0.93488 0.99416 1.21544 0.99582 0.92702 0.86310 1.47842 1.14813 1.52093 1.15960 1.19781 0.90256 0.97616 0.83074 1.21215 1.17705 1.11696 1.01174 0.94529 1.25597 0.95236 0.96039 1.01500 1.70080 1.25711 1.30049 1.32969 0.86117 0.77869 0.81155 0.80317 1.19570 1.15913 1.21259 1.19640 0.82050 0.79303 0.87353 1.90596 1.54720 1.62740 1.36883 1.22015 0.84010 0.93572 0.99846 0.86589 1.88218 1.15854 1.62130 1.62210 1.23505 1.03154 0.86169 0.91551 1.22460 0.79477 0.99729 1.02931 1.47538 1.11961 1.06186 1.69830 1.21661 0.99016 0.82881 1.01843 1.20624 0.87138 0.87581 0.79902 1.91209 1.16280 1.85662 1.43939 0.92391 0.91286 0.93626 0.91528 0.92891 0.91341 0.92331 0.91381 0.92762 0.92377 0.90184 0.93167 0.94774 0.93250 0.82442 0.90824 0.89906 0.85937 0.92458 0.93754 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.95 71.98 0.64 -2.96 16 2 C -0.09 -2.31 2.92 -10.79 -0.03 -2.34 16 3 C -0.14 -2.87 9.19 71.98 0.66 -2.21 16 4 C -0.12 -3.61 5.01 30.59 0.15 -3.46 16 5 C 0.12 4.70 5.14 86.38 0.44 5.15 16 6 N -0.58 -25.43 2.42 -826.15 -2.00 -27.43 16 7 C 0.21 9.82 3.94 85.63 0.34 10.15 16 8 C -0.48 -26.97 6.93 25.60 0.18 -26.79 16 9 H 0.04 2.44 7.11 -2.91 -0.02 2.42 16 10 C 0.01 0.72 5.47 84.65 0.46 1.18 16 11 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 12 Si 0.92 41.69 27.37 68.60 1.88 43.57 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 14 H -0.24 -9.45 6.69 99.48 0.67 -8.79 16 15 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 16 C 0.53 23.87 6.53 87.66 0.57 24.45 16 17 O -0.57 -27.63 16.28 14.97 0.24 -27.39 16 18 C 0.07 2.76 2.67 28.99 0.08 2.84 16 19 H 0.12 4.34 6.02 -2.39 -0.01 4.32 16 20 O -0.37 -12.16 10.12 -130.98 -1.33 -13.49 16 21 C 0.03 0.66 6.89 71.99 0.50 1.16 16 22 C 0.08 1.54 6.63 86.46 0.57 2.12 16 23 N -0.62 -20.01 3.23 -849.60 -2.75 -22.75 16 24 C 0.09 2.58 10.34 127.77 1.32 3.90 16 25 C 0.46 19.72 7.13 87.68 0.62 20.35 16 26 O -0.50 -26.54 11.31 -3.05 -0.03 -26.58 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.25 6.57 -2.39 -0.02 1.23 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 2.39 7.51 -2.39 -0.02 2.37 16 37 H 0.08 3.18 6.50 -2.39 -0.02 3.16 16 38 H 0.05 2.16 7.52 -2.38 -0.02 2.14 16 39 H 0.03 1.49 4.90 -2.39 -0.01 1.48 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.16 1.90 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.12 1.54 8.13 -2.39 -0.02 1.52 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.04 1.64 7.23 -2.39 -0.02 1.62 16 47 H 0.11 2.14 8.04 -2.39 -0.02 2.12 16 Total: -1.00 -80.66 368.83 3.73 -76.93 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.91 Total: 22.74 kcal Atomic # 6 Polarization: 27.01 SS G_CDS: 6.51 Total: 33.52 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -4.45 Total: -109.30 kcal Atomic # 8 Polarization: -66.34 SS G_CDS: -1.12 Total: -67.46 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.88 Total: 43.57 kcal Total: -80.66 3.73 -76.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826709897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.232 kcal (2) G-P(sol) polarization free energy of solvation -80.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds