Wall clock time and date at job start Fri Apr 10 2020 18:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48492 * 109.47409 * 270.00025 * 3 2 1 5 5 H 1.48506 * 109.46979 * 30.00303 * 3 2 1 6 6 H 1.48501 * 109.47400 * 149.99961 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00062 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00502 * 180.27116 * 7 2 1 10 10 N 1.46894 * 109.47298 * 294.67980 * 9 7 2 11 11 C 1.46901 * 110.99970 * 172.55687 * 10 9 7 12 12 C 1.52997 * 109.47141 * 293.94991 * 11 10 9 13 13 N 1.46894 * 109.47582 * 179.97438 * 12 11 10 14 14 C 1.47007 * 111.00349 * 293.64152 * 13 12 11 15 15 C 1.53100 * 109.26260 * 177.60308 * 14 13 12 16 16 O 1.43021 * 109.25552 * 56.84789 * 15 14 13 17 17 C 1.43015 * 113.73581 * 301.33017 * 16 15 14 18 18 C 1.47010 * 111.00426 * 169.99907 * 13 12 11 19 19 C 1.46900 * 111.00129 * 296.50661 * 10 9 7 20 20 C 1.52995 * 109.47482 * 164.16522 * 19 10 9 21 21 H 1.09003 * 110.19461 * 61.28607 * 20 19 10 22 22 C 1.54484 * 110.22430 * 183.24063 * 20 19 10 23 23 C 1.54678 * 101.62857 * 144.34813 * 22 20 19 24 24 C 1.51330 * 103.93840 * 335.49233 * 23 22 20 25 25 O 1.20825 * 124.95107 * 196.03782 * 24 23 22 26 26 O 1.33836 * 110.09785 * 16.05409 * 24 23 22 27 27 H 0.97002 * 120.00107 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46779 * 54.67551 * 9 7 2 29 29 H 1.09000 * 109.47147 * 174.67082 * 9 7 2 30 30 H 1.08998 * 109.47445 * 53.94856 * 11 10 9 31 31 H 1.09005 * 109.47203 * 173.94989 * 11 10 9 32 32 H 1.09001 * 109.47566 * 300.00165 * 12 11 10 33 33 H 1.09005 * 109.47074 * 59.99918 * 12 11 10 34 34 H 1.09008 * 109.50589 * 297.53862 * 14 13 12 35 35 H 1.09004 * 109.51068 * 57.66279 * 14 13 12 36 36 H 1.08992 * 109.50571 * 296.91056 * 15 14 13 37 37 H 1.09003 * 109.50901 * 176.78204 * 15 14 13 38 38 H 1.09004 * 109.50621 * 298.73487 * 17 16 15 39 39 H 1.09003 * 109.50483 * 178.60785 * 17 16 15 40 40 H 1.08997 * 109.50729 * 302.33101 * 18 13 12 41 41 H 1.09005 * 109.50785 * 62.46259 * 18 13 12 42 42 H 1.08997 * 109.47308 * 284.17260 * 19 10 9 43 43 H 1.09005 * 109.46665 * 44.16882 * 19 10 9 44 44 H 1.09001 * 110.99544 * 262.43080 * 22 20 19 45 45 H 1.09005 * 110.99394 * 26.26339 * 22 20 19 46 46 H 1.08996 * 110.53359 * 216.88036 * 23 22 20 47 47 H 1.08992 * 110.53672 * 94.10591 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0067 10 7 4.0064 -0.6134 -1.2486 11 6 5.4638 -0.4342 -1.2071 12 6 5.8185 0.6181 -0.1547 13 7 7.2759 0.7970 -0.1127 14 6 7.9420 -0.4179 0.3787 15 6 9.4584 -0.2095 0.3497 16 8 9.7911 0.9431 1.1285 17 6 9.1601 2.1445 0.6772 18 6 7.6407 1.9598 0.7094 19 6 3.6095 -1.4339 -2.4006 20 6 3.7845 -0.6250 -3.6874 21 1 4.8299 -0.3445 -3.8164 22 6 3.2954 -1.4431 -4.9032 23 6 2.6796 -0.3391 -5.7945 24 6 2.3177 0.7585 -4.8176 25 8 1.5705 1.6779 -5.0550 26 8 2.9462 0.5627 -3.6523 27 1 -0.4850 0.8401 0.0004 28 1 3.8714 -0.6015 0.8478 29 1 3.8744 -2.2175 0.1017 30 1 5.9391 -1.3806 -0.9492 31 1 5.8173 -0.1045 -2.1841 32 1 5.3433 1.5646 -0.4125 33 1 5.4651 0.2884 0.8223 34 1 7.6219 -0.6204 1.4008 35 1 7.6782 -1.2612 -0.2597 36 1 9.7857 -0.0603 -0.6792 37 1 9.9544 -1.0860 0.7666 38 1 9.4788 2.3621 -0.3423 39 1 9.4404 2.9705 1.3309 40 1 7.1570 2.8523 0.3125 41 1 7.3158 1.7955 1.7369 42 1 4.2347 -2.3257 -2.4442 43 1 2.5650 -1.7273 -2.2951 44 1 4.1299 -1.9312 -5.4066 45 1 2.5407 -2.1712 -4.6058 46 1 1.7882 -0.7094 -6.3008 47 1 3.4107 0.0196 -6.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851798269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:46 Heat of formation + Delta-G solvation = -105.696672 kcal Electronic energy + Delta-G solvation = -27835.854993 eV Core-core repulsion = 24019.384621 eV Total energy + Delta-G solvation = -3816.470372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57511 -39.62476 -37.71423 -36.79124 -35.37207 -32.92831 -32.36382 -31.30512 -30.17267 -29.22289 -27.21895 -25.50139 -24.11346 -23.39581 -22.05662 -21.78781 -20.83787 -20.37166 -19.73831 -17.21023 -16.87903 -16.47447 -16.40855 -16.19470 -15.57478 -15.20804 -15.10262 -15.02821 -14.57344 -14.39060 -14.04285 -13.71689 -13.56123 -13.50187 -13.16976 -12.93295 -12.67978 -12.40364 -12.12547 -11.96893 -11.83952 -11.48094 -11.39492 -11.24977 -11.12586 -10.81409 -10.77026 -10.51819 -10.42484 -10.11224 -9.84746 -9.77207 -9.75216 -9.61335 -9.16941 -8.51326 -8.30349 -7.36854 -6.00640 -4.10384 2.53716 3.47950 3.59108 3.66046 3.68434 3.80775 3.82344 4.13214 4.38309 4.58789 4.68627 4.78369 4.85894 4.93158 4.95742 5.04200 5.07910 5.17926 5.32240 5.38939 5.42785 5.45176 5.49044 5.54241 5.55761 5.62021 5.69612 5.73917 5.77590 5.86519 5.87456 5.92039 6.03937 6.23183 6.29572 6.52670 6.67841 6.91423 6.94608 7.04390 7.05175 7.33213 7.59993 7.85704 7.89026 8.11721 8.54328 8.96038 9.65069 11.08535 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.004791 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.365828 B = 5842.422846 C = 6814.092751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.092 3.908 3 Si 0.909 3.091 4 H -0.258 1.258 5 H -0.318 1.318 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.153 3.847 10 N -0.532 5.532 11 C 0.055 3.945 12 C 0.057 3.943 13 N -0.538 5.538 14 C 0.014 3.986 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.066 3.934 18 C 0.017 3.983 19 C 0.064 3.936 20 C 0.086 3.914 21 H 0.090 0.910 22 C -0.151 4.151 23 C -0.187 4.187 24 C 0.475 3.525 25 O -0.472 6.472 26 O -0.304 6.304 27 H 0.264 0.736 28 H 0.039 0.961 29 H 0.000 1.000 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.296 -2.267 -6.696 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.114 4.114 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.247 1.247 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.258 5.258 11 C -0.073 4.073 12 C -0.070 4.070 13 N -0.264 5.264 14 C -0.114 4.114 15 C -0.012 4.012 16 O -0.307 6.307 17 C -0.011 4.011 18 C -0.111 4.111 19 C -0.064 4.064 20 C 0.030 3.970 21 H 0.107 0.893 22 C -0.189 4.189 23 C -0.226 4.226 24 C 0.316 3.684 25 O -0.358 6.358 26 O -0.218 6.218 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.018 0.982 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.126 0.874 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.858 -1.084 -6.958 18.270 hybrid contribution 0.139 -0.153 0.522 0.561 sum 16.997 -1.238 -6.436 18.217 Atomic orbital electron populations 1.69940 1.06963 1.27460 1.48929 1.24993 0.94464 0.99986 0.91911 0.86344 0.78707 0.81431 0.79558 1.18261 1.24679 1.19329 1.20817 0.88503 0.94272 1.53152 0.91495 1.20290 0.96865 0.92753 0.87169 1.62392 1.07954 1.50507 1.04917 1.22077 0.90426 0.96206 0.98626 1.22317 0.84932 1.00935 0.98833 1.62185 1.09458 1.03286 1.51462 1.22835 0.95038 0.94012 0.99548 1.22661 0.93944 0.88584 0.95985 1.87960 1.69792 1.16889 1.56099 1.22655 0.91033 0.87262 1.00163 1.22760 0.96884 0.94995 0.96491 1.22092 1.04112 0.92217 0.88009 1.23803 0.93567 0.83107 0.96549 0.89261 1.23077 1.02399 0.98102 0.95291 1.22987 1.04099 0.95985 0.99528 1.23083 0.77691 0.85182 0.82471 1.90681 1.32976 1.34093 1.78088 1.87062 1.55521 1.44285 1.34982 0.92706 0.94340 0.98201 0.95883 0.91431 0.89951 0.93832 0.93989 0.89385 0.92404 0.88707 0.92341 0.88642 0.89595 0.93944 0.93951 0.87607 0.88740 0.88828 0.87411 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 2 C 0.09 2.66 5.47 -17.82 -0.10 2.57 16 3 Si 0.91 23.61 25.67 -169.99 -4.36 19.24 16 4 H -0.26 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.32 -8.54 7.11 56.52 0.40 -8.14 16 6 H -0.27 -6.36 4.49 56.52 0.25 -6.11 16 7 C -0.53 -14.47 8.45 -34.44 -0.29 -14.76 16 8 H 0.07 1.98 8.06 -52.48 -0.42 1.56 16 9 C 0.15 3.43 4.24 -4.98 -0.02 3.41 16 10 N -0.53 -10.47 2.44 -236.08 -0.58 -11.05 16 11 C 0.06 0.89 4.74 -3.82 -0.02 0.87 16 12 C 0.06 0.95 3.76 -3.83 -0.01 0.94 16 13 N -0.54 -7.48 4.73 -234.31 -1.11 -8.59 16 14 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 15 C 0.07 0.69 7.01 37.21 0.26 0.95 16 16 O -0.39 -4.80 10.83 -35.23 -0.38 -5.18 16 17 C 0.07 0.71 7.01 37.21 0.26 0.97 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 19 C 0.06 1.10 4.49 -3.83 -0.02 1.08 16 20 C 0.09 1.27 3.58 -25.95 -0.09 1.17 16 21 H 0.09 1.14 6.69 -51.93 -0.35 0.79 16 22 C -0.15 -1.62 6.70 -25.07 -0.17 -1.79 16 23 C -0.19 -2.19 6.88 -26.69 -0.18 -2.37 16 24 C 0.48 8.68 8.65 36.31 0.31 8.99 16 25 O -0.47 -10.40 18.00 -18.43 -0.33 -10.73 16 26 O -0.30 -6.07 10.53 -37.90 -0.40 -6.47 16 27 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 28 H 0.04 0.89 4.86 -51.93 -0.25 0.64 16 29 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.02 0.35 6.49 -51.93 -0.34 0.01 16 31 H 0.07 1.02 6.44 -51.93 -0.33 0.68 16 32 H 0.08 1.53 6.96 -51.93 -0.36 1.17 16 33 H 0.04 0.80 6.12 -51.93 -0.32 0.48 16 34 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.09 1.01 6.38 -51.93 -0.33 0.68 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 43 H 0.11 2.16 6.76 -51.93 -0.35 1.81 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 46 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -34.69 359.45 -8.89 -43.58 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.81 Total: -1.50 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.11 Total: 2.38 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.91 Total: -46.74 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.11 Total: -22.38 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.36 Total: 19.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.69 -8.89 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851798269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.117 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds