Wall clock time and date at job start Fri Apr 10 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48492 * 109.47409 * 270.00025 * 3 2 1 5 5 H 1.48506 * 109.46979 * 30.00303 * 3 2 1 6 6 H 1.48501 * 109.47400 * 149.99961 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00062 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00502 * 180.27116 * 7 2 1 10 10 N 1.46894 * 109.47298 * 294.67980 * 9 7 2 11 11 C 1.46901 * 110.99970 * 172.55687 * 10 9 7 12 12 C 1.52997 * 109.47141 * 293.94991 * 11 10 9 13 13 N 1.46894 * 109.47582 * 179.97438 * 12 11 10 14 14 C 1.47007 * 111.00349 * 293.64152 * 13 12 11 15 15 C 1.53100 * 109.26260 * 177.60308 * 14 13 12 16 16 O 1.43021 * 109.25552 * 56.84789 * 15 14 13 17 17 C 1.43015 * 113.73581 * 301.33017 * 16 15 14 18 18 C 1.47010 * 111.00426 * 169.99907 * 13 12 11 19 19 C 1.46900 * 111.00129 * 296.50661 * 10 9 7 20 20 C 1.52995 * 109.47482 * 164.16522 * 19 10 9 21 21 H 1.09003 * 110.19461 * 61.28607 * 20 19 10 22 22 C 1.54484 * 110.22430 * 183.24063 * 20 19 10 23 23 C 1.54678 * 101.62857 * 144.34813 * 22 20 19 24 24 C 1.51330 * 103.93840 * 335.49233 * 23 22 20 25 25 O 1.20825 * 124.95107 * 196.03782 * 24 23 22 26 26 O 1.33836 * 110.09785 * 16.05409 * 24 23 22 27 27 H 0.97002 * 120.00107 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46779 * 54.67551 * 9 7 2 29 29 H 1.09000 * 109.47147 * 174.67082 * 9 7 2 30 30 H 1.08998 * 109.47445 * 53.94856 * 11 10 9 31 31 H 1.09005 * 109.47203 * 173.94989 * 11 10 9 32 32 H 1.09001 * 109.47566 * 300.00165 * 12 11 10 33 33 H 1.09005 * 109.47074 * 59.99918 * 12 11 10 34 34 H 1.09008 * 109.50589 * 297.53862 * 14 13 12 35 35 H 1.09004 * 109.51068 * 57.66279 * 14 13 12 36 36 H 1.08992 * 109.50571 * 296.91056 * 15 14 13 37 37 H 1.09003 * 109.50901 * 176.78204 * 15 14 13 38 38 H 1.09004 * 109.50621 * 298.73487 * 17 16 15 39 39 H 1.09003 * 109.50483 * 178.60785 * 17 16 15 40 40 H 1.08997 * 109.50729 * 302.33101 * 18 13 12 41 41 H 1.09005 * 109.50785 * 62.46259 * 18 13 12 42 42 H 1.08997 * 109.47308 * 284.17260 * 19 10 9 43 43 H 1.09005 * 109.46665 * 44.16882 * 19 10 9 44 44 H 1.09001 * 110.99544 * 262.43080 * 22 20 19 45 45 H 1.09005 * 110.99394 * 26.26339 * 22 20 19 46 46 H 1.08996 * 110.53359 * 216.88036 * 23 22 20 47 47 H 1.08992 * 110.53672 * 94.10591 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0067 10 7 4.0064 -0.6134 -1.2486 11 6 5.4638 -0.4342 -1.2071 12 6 5.8185 0.6181 -0.1547 13 7 7.2759 0.7970 -0.1127 14 6 7.9420 -0.4179 0.3787 15 6 9.4584 -0.2095 0.3497 16 8 9.7911 0.9431 1.1285 17 6 9.1601 2.1445 0.6772 18 6 7.6407 1.9598 0.7094 19 6 3.6095 -1.4339 -2.4006 20 6 3.7845 -0.6250 -3.6874 21 1 4.8299 -0.3445 -3.8164 22 6 3.2954 -1.4431 -4.9032 23 6 2.6796 -0.3391 -5.7945 24 6 2.3177 0.7585 -4.8176 25 8 1.5705 1.6779 -5.0550 26 8 2.9462 0.5627 -3.6523 27 1 -0.4850 0.8401 0.0004 28 1 3.8714 -0.6015 0.8478 29 1 3.8744 -2.2175 0.1017 30 1 5.9391 -1.3806 -0.9492 31 1 5.8173 -0.1045 -2.1841 32 1 5.3433 1.5646 -0.4125 33 1 5.4651 0.2884 0.8223 34 1 7.6219 -0.6204 1.4008 35 1 7.6782 -1.2612 -0.2597 36 1 9.7857 -0.0603 -0.6792 37 1 9.9544 -1.0860 0.7666 38 1 9.4788 2.3621 -0.3423 39 1 9.4404 2.9705 1.3309 40 1 7.1570 2.8523 0.3125 41 1 7.3158 1.7955 1.7369 42 1 4.2347 -2.3257 -2.4442 43 1 2.5650 -1.7273 -2.2951 44 1 4.1299 -1.9312 -5.4066 45 1 2.5407 -2.1712 -4.6058 46 1 1.7882 -0.7094 -6.3008 47 1 3.4107 0.0196 -6.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851798269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:44 Heat of formation + Delta-G solvation = -132.160193 kcal Electronic energy + Delta-G solvation = -27837.002538 eV Core-core repulsion = 24019.384621 eV Total energy + Delta-G solvation = -3817.617917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.86397 -40.60755 -39.14174 -38.19927 -36.56381 -34.60203 -33.93531 -32.20679 -31.35303 -30.86896 -28.65015 -26.67966 -25.06065 -24.85354 -23.57354 -22.99104 -22.16172 -21.38853 -21.16764 -18.76163 -18.34027 -17.86443 -17.65711 -17.13693 -16.88123 -16.69424 -16.23696 -15.99851 -15.97107 -15.88059 -15.35179 -15.11262 -14.98932 -14.58589 -14.56969 -14.38924 -14.09409 -13.69234 -13.39427 -13.16592 -13.08680 -12.72258 -12.58713 -12.43674 -12.32525 -12.23725 -12.22249 -11.96367 -11.91943 -11.58483 -11.45232 -11.29164 -11.16505 -11.09038 -10.74018 -10.65051 -9.47053 -8.88357 -8.28918 -6.38437 1.18680 1.39956 1.54330 1.63334 2.33120 2.48361 2.58905 2.92974 3.01259 3.09944 3.42830 3.52610 3.81044 3.91438 3.94273 4.00766 4.06318 4.12858 4.19941 4.31442 4.35274 4.35538 4.42608 4.50815 4.62471 4.65679 4.72355 4.73299 4.78974 4.81396 4.86721 4.90339 4.95492 4.99113 5.02077 5.06725 5.10829 5.30302 5.55431 5.86288 5.92568 6.01509 6.13189 6.17550 6.38919 6.51367 6.61195 6.78605 7.39324 8.83027 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.004791 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.365828 B = 5842.422846 C = 6814.092751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.042 3.958 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.333 1.333 6 H -0.237 1.237 7 C -0.517 4.517 8 H 0.032 0.968 9 C 0.167 3.833 10 N -0.554 5.554 11 C 0.063 3.937 12 C 0.062 3.938 13 N -0.534 5.534 14 C 0.013 3.987 15 C 0.067 3.933 16 O -0.405 6.405 17 C 0.070 3.930 18 C 0.012 3.988 19 C 0.064 3.936 20 C 0.080 3.920 21 H 0.120 0.880 22 C -0.136 4.136 23 C -0.168 4.168 24 C 0.459 3.541 25 O -0.530 6.530 26 O -0.353 6.353 27 H 0.259 0.741 28 H 0.034 0.966 29 H 0.014 0.986 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.027 0.973 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.029 0.971 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.145 0.855 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.424 -3.519 -8.502 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.158 4.158 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.264 1.264 6 H -0.160 1.160 7 C -0.555 4.555 8 H 0.050 0.950 9 C 0.041 3.959 10 N -0.280 5.280 11 C -0.065 4.065 12 C -0.066 4.066 13 N -0.260 5.260 14 C -0.115 4.115 15 C -0.010 4.010 16 O -0.324 6.324 17 C -0.007 4.007 18 C -0.116 4.116 19 C -0.064 4.064 20 C 0.025 3.975 21 H 0.137 0.863 22 C -0.173 4.173 23 C -0.206 4.206 24 C 0.304 3.696 25 O -0.420 6.420 26 O -0.268 6.268 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.047 0.953 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.163 0.837 45 H 0.106 0.894 46 H 0.140 0.860 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 21.046 -2.380 -8.758 22.920 hybrid contribution -1.085 0.131 1.112 1.559 sum 19.961 -2.250 -7.647 21.494 Atomic orbital electron populations 1.70068 1.08587 1.27635 1.52382 1.25651 0.94804 1.02899 0.92439 0.85452 0.78725 0.77777 0.78394 1.20211 1.26407 1.16044 1.21091 0.91369 0.92345 1.50674 0.94987 1.19979 0.93350 0.93810 0.88715 1.61965 1.10731 1.51145 1.04190 1.22068 0.87793 0.97050 0.99561 1.22141 0.86830 0.99844 0.97802 1.62216 1.07485 1.04400 1.51894 1.22939 0.96169 0.93550 0.98869 1.22791 0.92622 0.88869 0.96708 1.87948 1.69934 1.17661 1.56889 1.22726 0.89246 0.87444 1.01253 1.22868 0.98544 0.94677 0.95510 1.22141 1.02183 0.93781 0.88298 1.24116 0.94463 0.82154 0.96751 0.86272 1.23152 1.03861 0.97088 0.93221 1.23013 1.05703 0.93421 0.98465 1.24229 0.76321 0.85777 0.83282 1.90627 1.35344 1.36871 1.79192 1.86989 1.56336 1.46613 1.36866 0.93264 0.94750 0.96748 0.93681 0.89361 0.92223 0.96068 0.95442 0.88198 0.91271 0.86652 0.91364 0.86829 0.89434 0.95300 0.90149 0.91894 0.83687 0.89350 0.86008 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.86 13.96 21.45 0.30 -61.56 16 2 C 0.04 2.50 5.47 84.66 0.46 2.96 16 3 Si 0.97 50.91 25.67 68.60 1.76 52.68 16 4 H -0.28 -15.34 7.11 99.48 0.71 -14.63 16 5 H -0.33 -18.27 7.11 99.48 0.71 -17.56 16 6 H -0.24 -11.06 4.49 99.48 0.45 -10.62 16 7 C -0.52 -29.01 8.45 25.60 0.22 -28.80 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 9 C 0.17 7.36 4.24 85.56 0.36 7.72 16 10 N -0.55 -20.91 2.44 -900.81 -2.20 -23.10 16 11 C 0.06 1.83 4.74 86.30 0.41 2.24 16 12 C 0.06 1.95 3.76 86.30 0.32 2.27 16 13 N -0.53 -13.52 4.73 -895.23 -4.23 -17.75 16 14 C 0.01 0.27 5.44 86.32 0.47 0.74 16 15 C 0.07 1.18 7.01 72.02 0.50 1.68 16 16 O -0.41 -8.84 10.83 -148.98 -1.61 -10.45 16 17 C 0.07 1.32 7.01 72.01 0.50 1.83 16 18 C 0.01 0.29 5.64 86.31 0.49 0.78 16 19 C 0.06 2.05 4.49 86.30 0.39 2.44 16 20 C 0.08 2.12 3.58 31.10 0.11 2.23 16 21 H 0.12 2.44 6.69 -2.39 -0.02 2.42 16 22 C -0.14 -2.31 6.70 31.67 0.21 -2.10 16 23 C -0.17 -3.35 6.88 30.62 0.21 -3.14 16 24 C 0.46 16.69 8.65 71.44 0.62 17.31 16 25 O -0.53 -24.19 18.00 21.67 0.39 -23.80 16 26 O -0.35 -13.97 10.53 -48.01 -0.51 -14.48 16 27 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 28 H 0.03 1.56 4.86 -2.39 -0.01 1.54 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 1.15 6.49 -2.39 -0.02 1.13 16 31 H 0.09 2.25 6.44 -2.38 -0.02 2.24 16 32 H 0.06 2.14 6.96 -2.39 -0.02 2.13 16 33 H 0.02 0.76 6.12 -2.38 -0.01 0.74 16 34 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.10 1.88 6.38 -2.39 -0.02 1.87 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 40 H 0.09 2.00 8.09 -2.39 -0.02 1.98 16 41 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 43 H 0.06 2.58 6.76 -2.38 -0.02 2.57 16 44 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 1.64 7.90 -2.38 -0.02 1.62 16 46 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -82.76 359.45 -0.12 -82.87 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.69 Total: 7.42 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.28 Total: 8.17 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -6.13 Total: -102.42 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.73 Total: -48.73 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 1.76 Total: 52.68 kcal Total: -82.76 -0.12 -82.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851798269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.286 kcal (2) G-P(sol) polarization free energy of solvation -82.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds