Wall clock time and date at job start Fri Apr 10 2020 18:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00197 * 2 1 4 4 H 1.48503 * 109.46891 * 90.70176 * 3 2 1 5 5 H 1.48501 * 109.46666 * 330.70646 * 3 2 1 6 6 H 1.48497 * 109.47207 * 210.70633 * 3 2 1 7 7 C 1.37882 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99903 * 12.09563 * 7 2 1 9 9 C 1.50698 * 119.99949 * 192.09631 * 7 2 1 10 10 N 1.46907 * 109.47185 * 63.65279 * 9 7 2 11 11 C 1.46904 * 111.00054 * 70.40448 * 10 9 7 12 12 C 1.53002 * 109.47232 * 282.47555 * 11 10 9 13 13 N 1.46900 * 109.47349 * 183.27358 * 12 11 10 14 14 C 1.47009 * 110.99728 * 293.63631 * 13 12 11 15 15 C 1.53100 * 109.25607 * 177.60484 * 14 13 12 16 16 O 1.43013 * 109.25711 * 56.84835 * 15 14 13 17 17 C 1.43018 * 113.74068 * 301.33050 * 16 15 14 18 18 C 1.47013 * 111.00074 * 170.00109 * 13 12 11 19 19 C 1.46892 * 111.00088 * 194.36166 * 10 9 7 20 20 C 1.52998 * 109.47600 * 73.29789 * 19 10 9 21 21 H 1.09009 * 110.00865 * 302.14262 * 20 19 10 22 22 C 1.54254 * 110.03085 * 180.71271 * 20 19 10 23 23 C 1.54710 * 102.26375 * 225.51592 * 22 20 19 24 24 C 1.51662 * 103.00757 * 25.20713 * 23 22 20 25 25 O 1.20829 * 125.69949 * 151.43580 * 24 23 22 26 26 O 1.34007 * 108.60614 * 331.47249 * 24 23 22 27 27 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46720 * 183.64504 * 9 7 2 29 29 H 1.08993 * 109.47585 * 303.64798 * 9 7 2 30 30 H 1.08998 * 109.47223 * 42.47285 * 11 10 9 31 31 H 1.09000 * 109.46804 * 162.47800 * 11 10 9 32 32 H 1.08998 * 109.47093 * 303.27777 * 12 11 10 33 33 H 1.09005 * 109.46796 * 63.27404 * 12 11 10 34 34 H 1.09002 * 109.50880 * 297.54199 * 14 13 12 35 35 H 1.08999 * 109.51103 * 57.67405 * 14 13 12 36 36 H 1.08998 * 109.50949 * 296.91450 * 15 14 13 37 37 H 1.09001 * 109.50544 * 176.78103 * 15 14 13 38 38 H 1.09001 * 109.50242 * 298.73657 * 17 16 15 39 39 H 1.08997 * 109.53866 * 178.62408 * 17 16 15 40 40 H 1.09003 * 109.50582 * 302.32737 * 18 13 12 41 41 H 1.09001 * 109.50668 * 62.46020 * 18 13 12 42 42 H 1.08997 * 109.47012 * 193.29961 * 19 10 9 43 43 H 1.09007 * 109.47027 * 313.29637 * 19 10 9 44 44 H 1.09005 * 110.84636 * 343.71235 * 22 20 19 45 45 H 1.09004 * 110.85042 * 107.31997 * 22 20 19 46 46 H 1.08997 * 110.71125 * 266.82875 * 23 22 20 47 47 H 1.09002 * 110.71292 * 143.58988 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5116 2.0378 1.4000 5 1 1.4392 2.6569 -0.6851 6 1 3.5392 1.4445 -0.7149 7 6 2.0046 -1.1941 0.0005 8 1 1.4825 -2.1192 -0.1951 9 6 3.4865 -1.2085 0.2740 10 7 3.7369 -0.7313 1.6407 11 6 3.2816 -1.7141 2.6331 12 6 1.7596 -1.6352 2.7682 13 7 1.3122 -2.5622 3.8162 14 6 1.5497 -3.9582 3.4212 15 6 1.1255 -4.8853 4.5633 16 8 -0.2461 -4.6396 4.8855 17 6 -0.5131 -3.2897 5.2752 18 6 -0.1054 -2.3465 4.1403 19 6 5.1566 -0.4074 1.8334 20 6 5.4873 0.8935 1.0991 21 1 5.2508 0.7943 0.0396 22 6 6.9805 1.2365 1.2783 23 6 6.9325 2.7446 1.6203 24 6 5.5471 2.9163 2.2132 25 8 5.2290 3.7444 3.0335 26 8 4.7350 1.9956 1.6759 27 1 -0.4849 0.8401 -0.0004 28 1 3.8654 -2.2251 0.1691 29 1 3.9936 -0.5564 -0.4371 30 1 3.5662 -2.7154 2.3099 31 1 3.7435 -1.4982 3.5965 32 1 1.4708 -0.6185 3.0348 33 1 1.2962 -1.9077 1.8200 34 1 0.9665 -4.1884 2.5296 35 1 2.6095 -4.1016 3.2106 36 1 1.7453 -4.6916 5.4387 37 1 1.2463 -5.9233 4.2534 38 1 0.0592 -3.0497 6.1713 39 1 -1.5772 -3.1733 5.4807 40 1 -0.2538 -1.3134 4.4547 41 1 -0.7152 -2.5511 3.2603 42 1 5.3604 -0.2861 2.8972 43 1 5.7708 -1.2154 1.4356 44 1 7.4136 0.6660 2.1000 45 1 7.5315 1.0658 0.3534 46 1 7.0435 3.3479 0.7193 47 1 7.6992 2.9985 2.3523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851798274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:49 Heat of formation + Delta-G solvation = -96.798724 kcal Electronic energy + Delta-G solvation = -28035.118645 eV Core-core repulsion = 24219.034117 eV Total energy + Delta-G solvation = -3816.084528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75477 -39.18507 -37.73906 -36.77787 -34.99960 -33.05472 -32.42348 -30.91730 -30.12873 -28.79729 -27.38851 -25.38994 -23.66608 -23.37099 -22.18526 -21.57030 -20.64776 -19.97567 -19.71665 -17.49752 -16.83457 -16.59330 -16.07458 -15.86484 -15.51923 -15.17518 -14.75521 -14.69815 -14.58181 -14.26816 -14.11005 -13.73852 -13.50662 -13.32492 -12.91827 -12.89170 -12.43153 -12.22127 -11.92329 -11.86220 -11.60648 -11.42923 -11.33754 -11.20074 -11.05406 -10.68868 -10.42822 -10.38534 -10.27806 -10.05514 -9.81099 -9.78565 -9.72368 -9.36285 -9.28394 -8.42739 -7.69851 -7.34629 -6.08244 -4.09688 2.23629 3.31375 3.50916 3.73907 3.82069 3.97552 4.04750 4.18108 4.32785 4.56005 4.62845 4.77379 4.99060 5.18637 5.21433 5.34076 5.38198 5.39375 5.42526 5.47736 5.50011 5.55283 5.60455 5.64577 5.76543 5.80226 5.83804 5.91450 6.07709 6.11329 6.20495 6.24807 6.31998 6.42996 6.61119 6.75258 6.89969 7.15230 7.26217 7.32665 7.50693 7.60733 7.66978 7.70454 7.96168 8.13862 8.48641 8.88241 9.58038 10.99434 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.004562 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.053120 B = 6136.819422 C = 6808.456465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.094 3.906 3 Si 0.902 3.098 4 H -0.242 1.242 5 H -0.314 1.314 6 H -0.279 1.279 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.150 3.850 10 N -0.533 5.533 11 C 0.088 3.912 12 C 0.052 3.948 13 N -0.545 5.545 14 C 0.018 3.982 15 C 0.065 3.935 16 O -0.391 6.391 17 C 0.066 3.934 18 C 0.023 3.977 19 C 0.044 3.956 20 C 0.076 3.924 21 H 0.111 0.889 22 C -0.149 4.149 23 C -0.189 4.189 24 C 0.473 3.527 25 O -0.466 6.466 26 O -0.311 6.311 27 H 0.263 0.737 28 H 0.002 0.998 29 H 0.033 0.967 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 -3.425 5.465 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.111 4.111 3 Si 0.733 3.267 4 H -0.167 1.167 5 H -0.243 1.243 6 H -0.205 1.205 7 C -0.561 4.561 8 H 0.085 0.915 9 C 0.026 3.974 10 N -0.259 5.259 11 C -0.040 4.040 12 C -0.074 4.074 13 N -0.271 5.271 14 C -0.111 4.111 15 C -0.012 4.012 16 O -0.309 6.309 17 C -0.011 4.011 18 C -0.106 4.106 19 C -0.085 4.085 20 C 0.021 3.979 21 H 0.128 0.872 22 C -0.187 4.187 23 C -0.228 4.228 24 C 0.314 3.686 25 O -0.351 6.351 26 O -0.226 6.226 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.129 0.871 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.768 -2.579 6.325 12.751 hybrid contribution 0.758 0.334 -1.004 1.302 sum 11.526 -2.244 5.320 12.891 Atomic orbital electron populations 1.69999 1.06829 1.27424 1.48309 1.24952 0.94366 0.99763 0.92060 0.86506 0.78041 0.81850 0.80284 1.16670 1.24312 1.20528 1.20672 0.91089 0.94710 1.49642 0.91457 1.20325 0.98455 0.93524 0.85087 1.62461 1.12813 1.44387 1.06191 1.21709 0.96180 0.92356 0.93765 1.22630 0.94847 0.95370 0.94592 1.62241 1.17384 1.03581 1.43907 1.22725 1.01661 0.89656 0.97008 1.22648 0.82775 0.98748 0.96987 1.87928 1.26690 1.28401 1.87902 1.22662 1.00641 0.81542 0.96260 1.22638 0.89534 1.00135 0.98298 1.22411 0.92599 0.93754 0.99722 1.23859 0.88673 0.85544 0.99869 0.87156 1.22995 0.96531 0.94869 1.04265 1.23124 0.97490 0.98284 1.03854 1.23334 0.86995 0.79971 0.78344 1.90675 1.80809 1.35269 1.28327 1.87312 1.36066 1.31704 1.67527 0.92723 0.97936 0.94933 0.96108 0.92910 0.91153 0.88295 0.93914 0.90122 0.92862 0.89162 0.92821 0.88992 0.90037 0.93561 0.91153 0.93412 0.89257 0.88520 0.87100 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 2 C 0.09 2.58 5.14 -17.82 -0.09 2.49 16 3 Si 0.90 22.67 23.43 -169.99 -3.98 18.68 16 4 H -0.24 -6.33 5.97 56.52 0.34 -5.99 16 5 H -0.31 -8.25 7.11 56.52 0.40 -7.84 16 6 H -0.28 -6.46 5.11 56.52 0.29 -6.17 16 7 C -0.52 -13.62 6.53 -34.44 -0.22 -13.85 16 8 H 0.07 1.93 7.86 -52.48 -0.41 1.52 16 9 C 0.15 3.25 4.23 -4.97 -0.02 3.23 16 10 N -0.53 -10.58 3.00 -236.07 -0.71 -11.29 16 11 C 0.09 1.66 4.85 -3.82 -0.02 1.64 16 12 C 0.05 1.08 4.39 -3.82 -0.02 1.07 16 13 N -0.54 -9.80 4.73 -234.31 -1.11 -10.91 16 14 C 0.02 0.29 5.43 -3.71 -0.02 0.27 16 15 C 0.07 0.91 7.01 37.21 0.26 1.17 16 16 O -0.39 -6.14 10.83 -35.23 -0.38 -6.52 16 17 C 0.07 0.95 7.01 37.21 0.26 1.21 16 18 C 0.02 0.39 5.64 -3.71 -0.02 0.37 16 19 C 0.04 0.68 4.52 -3.83 -0.02 0.67 16 20 C 0.08 1.15 2.83 -26.08 -0.07 1.08 16 21 H 0.11 1.78 5.18 -51.92 -0.27 1.51 16 22 C -0.15 -1.46 6.69 -25.18 -0.17 -1.63 16 23 C -0.19 -2.03 6.97 -26.51 -0.18 -2.21 16 24 C 0.47 7.97 8.62 36.48 0.31 8.28 16 25 O -0.47 -9.36 18.00 -18.37 -0.33 -9.70 16 26 O -0.31 -5.93 6.90 -38.29 -0.26 -6.19 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 29 H 0.03 0.70 4.95 -51.93 -0.26 0.44 16 30 H 0.02 0.38 6.30 -51.93 -0.33 0.05 16 31 H 0.05 0.94 7.59 -51.93 -0.39 0.55 16 32 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 33 H 0.10 2.44 4.99 -51.93 -0.26 2.18 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.22 6.45 -51.93 -0.34 0.89 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.04 7.63 -51.93 -0.40 0.64 16 43 H 0.05 0.64 8.03 -51.93 -0.42 0.22 16 44 H 0.09 0.74 7.80 -51.93 -0.40 0.34 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -32.10 351.25 -8.57 -40.66 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.83 Total: 1.38 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.02 Total: 3.78 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -1.04 Total: -47.40 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.98 Total: -22.41 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -3.98 Total: 18.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.10 -8.57 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851798274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.137 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds