Wall clock time and date at job start Fri Apr 10 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00197 * 2 1 4 4 H 1.48503 * 109.46891 * 90.70176 * 3 2 1 5 5 H 1.48501 * 109.46666 * 330.70646 * 3 2 1 6 6 H 1.48497 * 109.47207 * 210.70633 * 3 2 1 7 7 C 1.37882 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99903 * 12.09563 * 7 2 1 9 9 C 1.50698 * 119.99949 * 192.09631 * 7 2 1 10 10 N 1.46907 * 109.47185 * 63.65279 * 9 7 2 11 11 C 1.46904 * 111.00054 * 70.40448 * 10 9 7 12 12 C 1.53002 * 109.47232 * 282.47555 * 11 10 9 13 13 N 1.46900 * 109.47349 * 183.27358 * 12 11 10 14 14 C 1.47009 * 110.99728 * 293.63631 * 13 12 11 15 15 C 1.53100 * 109.25607 * 177.60484 * 14 13 12 16 16 O 1.43013 * 109.25711 * 56.84835 * 15 14 13 17 17 C 1.43018 * 113.74068 * 301.33050 * 16 15 14 18 18 C 1.47013 * 111.00074 * 170.00109 * 13 12 11 19 19 C 1.46892 * 111.00088 * 194.36166 * 10 9 7 20 20 C 1.52998 * 109.47600 * 73.29789 * 19 10 9 21 21 H 1.09009 * 110.00865 * 302.14262 * 20 19 10 22 22 C 1.54254 * 110.03085 * 180.71271 * 20 19 10 23 23 C 1.54710 * 102.26375 * 225.51592 * 22 20 19 24 24 C 1.51662 * 103.00757 * 25.20713 * 23 22 20 25 25 O 1.20829 * 125.69949 * 151.43580 * 24 23 22 26 26 O 1.34007 * 108.60614 * 331.47249 * 24 23 22 27 27 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46720 * 183.64504 * 9 7 2 29 29 H 1.08993 * 109.47585 * 303.64798 * 9 7 2 30 30 H 1.08998 * 109.47223 * 42.47285 * 11 10 9 31 31 H 1.09000 * 109.46804 * 162.47800 * 11 10 9 32 32 H 1.08998 * 109.47093 * 303.27777 * 12 11 10 33 33 H 1.09005 * 109.46796 * 63.27404 * 12 11 10 34 34 H 1.09002 * 109.50880 * 297.54199 * 14 13 12 35 35 H 1.08999 * 109.51103 * 57.67405 * 14 13 12 36 36 H 1.08998 * 109.50949 * 296.91450 * 15 14 13 37 37 H 1.09001 * 109.50544 * 176.78103 * 15 14 13 38 38 H 1.09001 * 109.50242 * 298.73657 * 17 16 15 39 39 H 1.08997 * 109.53866 * 178.62408 * 17 16 15 40 40 H 1.09003 * 109.50582 * 302.32737 * 18 13 12 41 41 H 1.09001 * 109.50668 * 62.46020 * 18 13 12 42 42 H 1.08997 * 109.47012 * 193.29961 * 19 10 9 43 43 H 1.09007 * 109.47027 * 313.29637 * 19 10 9 44 44 H 1.09005 * 110.84636 * 343.71235 * 22 20 19 45 45 H 1.09004 * 110.85042 * 107.31997 * 22 20 19 46 46 H 1.08997 * 110.71125 * 266.82875 * 23 22 20 47 47 H 1.09002 * 110.71292 * 143.58988 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5116 2.0378 1.4000 5 1 1.4392 2.6569 -0.6851 6 1 3.5392 1.4445 -0.7149 7 6 2.0046 -1.1941 0.0005 8 1 1.4825 -2.1192 -0.1951 9 6 3.4865 -1.2085 0.2740 10 7 3.7369 -0.7313 1.6407 11 6 3.2816 -1.7141 2.6331 12 6 1.7596 -1.6352 2.7682 13 7 1.3122 -2.5622 3.8162 14 6 1.5497 -3.9582 3.4212 15 6 1.1255 -4.8853 4.5633 16 8 -0.2461 -4.6396 4.8855 17 6 -0.5131 -3.2897 5.2752 18 6 -0.1054 -2.3465 4.1403 19 6 5.1566 -0.4074 1.8334 20 6 5.4873 0.8935 1.0991 21 1 5.2508 0.7943 0.0396 22 6 6.9805 1.2365 1.2783 23 6 6.9325 2.7446 1.6203 24 6 5.5471 2.9163 2.2132 25 8 5.2290 3.7444 3.0335 26 8 4.7350 1.9956 1.6759 27 1 -0.4849 0.8401 -0.0004 28 1 3.8654 -2.2251 0.1691 29 1 3.9936 -0.5564 -0.4371 30 1 3.5662 -2.7154 2.3099 31 1 3.7435 -1.4982 3.5965 32 1 1.4708 -0.6185 3.0348 33 1 1.2962 -1.9077 1.8200 34 1 0.9665 -4.1884 2.5296 35 1 2.6095 -4.1016 3.2106 36 1 1.7453 -4.6916 5.4387 37 1 1.2463 -5.9233 4.2534 38 1 0.0592 -3.0497 6.1713 39 1 -1.5772 -3.1733 5.4807 40 1 -0.2538 -1.3134 4.4547 41 1 -0.7152 -2.5511 3.2603 42 1 5.3604 -0.2861 2.8972 43 1 5.7708 -1.2154 1.4356 44 1 7.4136 0.6660 2.1000 45 1 7.5315 1.0658 0.3534 46 1 7.0435 3.3479 0.7193 47 1 7.6992 2.9985 2.3523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851798274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:48 Heat of formation + Delta-G solvation = -121.767066 kcal Electronic energy + Delta-G solvation = -28036.201354 eV Core-core repulsion = 24219.034117 eV Total energy + Delta-G solvation = -3817.167237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.94492 -40.52366 -39.14139 -38.22328 -36.41965 -34.59422 -33.94367 -32.19345 -31.43263 -30.49828 -28.89989 -26.70319 -24.96078 -24.82978 -23.51997 -22.94645 -22.00230 -21.31092 -21.18972 -19.06909 -18.25973 -17.96956 -17.43968 -17.13785 -16.80685 -16.75980 -16.27112 -16.09020 -15.94919 -15.79802 -15.38834 -15.14694 -14.92179 -14.71719 -14.34273 -14.27008 -13.77654 -13.56382 -13.30751 -13.22833 -13.02542 -12.89296 -12.54579 -12.44094 -12.33475 -12.24622 -12.11652 -11.94006 -11.73305 -11.63257 -11.42617 -11.32937 -11.23663 -11.09178 -10.62491 -10.49081 -9.32108 -8.87515 -8.24059 -6.24756 1.02503 1.42263 1.47841 1.74019 2.35743 2.56468 2.68281 2.92977 3.04578 3.12188 3.38774 3.54585 3.81944 3.93520 3.99479 4.08209 4.11248 4.21244 4.23246 4.31400 4.32810 4.41963 4.49946 4.57712 4.63780 4.69618 4.72113 4.74403 4.82987 4.86143 4.89841 4.92502 4.95879 5.00547 5.05025 5.11788 5.19816 5.50487 5.57408 5.98228 6.02451 6.06158 6.16365 6.18695 6.43793 6.47024 6.61653 6.82147 7.44084 8.86609 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.004562 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.053120 B = 6136.819422 C = 6808.456465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.051 3.949 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.335 1.335 6 H -0.244 1.244 7 C -0.508 4.508 8 H 0.026 0.974 9 C 0.162 3.838 10 N -0.558 5.558 11 C 0.097 3.903 12 C 0.067 3.933 13 N -0.538 5.538 14 C 0.018 3.982 15 C 0.069 3.931 16 O -0.405 6.405 17 C 0.074 3.926 18 C 0.020 3.980 19 C 0.044 3.956 20 C 0.064 3.936 21 H 0.100 0.900 22 C -0.130 4.130 23 C -0.171 4.171 24 C 0.461 3.539 25 O -0.516 6.516 26 O -0.356 6.356 27 H 0.258 0.742 28 H 0.016 0.984 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.013 0.987 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.012 0.988 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.112 0.888 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.792 -4.483 6.360 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.149 4.149 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.266 1.266 6 H -0.168 1.168 7 C -0.546 4.546 8 H 0.045 0.955 9 C 0.036 3.964 10 N -0.284 5.284 11 C -0.031 4.031 12 C -0.060 4.060 13 N -0.263 5.263 14 C -0.110 4.110 15 C -0.008 4.008 16 O -0.324 6.324 17 C -0.002 4.002 18 C -0.109 4.109 19 C -0.084 4.084 20 C 0.009 3.991 21 H 0.118 0.882 22 C -0.167 4.167 23 C -0.209 4.209 24 C 0.305 3.695 25 O -0.405 6.405 26 O -0.272 6.272 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.030 0.970 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.130 0.870 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.154 -3.674 7.204 17.177 hybrid contribution -0.621 0.572 -1.261 1.518 sum 14.533 -3.102 5.942 16.005 Atomic orbital electron populations 1.70128 1.08424 1.27440 1.51634 1.25512 0.94595 1.02301 0.92539 0.85676 0.78143 0.78328 0.79189 1.18774 1.26559 1.16821 1.20864 0.93538 0.92586 1.47653 0.95534 1.20099 0.95025 0.94692 0.86544 1.62061 1.16728 1.44628 1.04996 1.21622 0.94141 0.92881 0.94478 1.22231 0.96683 0.93940 0.93171 1.62320 1.17586 1.04274 1.42141 1.22836 1.02168 0.88831 0.97187 1.22798 0.82135 0.99377 0.96467 1.87918 1.27880 1.28669 1.87903 1.22699 1.02226 0.80258 0.95066 1.22718 0.88802 1.01068 0.98319 1.22568 0.89747 0.95106 1.00990 1.24104 0.92037 0.84254 0.98735 0.88249 1.23059 0.92734 0.93899 1.07014 1.23156 0.93452 0.99500 1.04811 1.24364 0.89202 0.78549 0.77355 1.90634 1.82245 1.36913 1.30681 1.87213 1.39035 1.33170 1.67825 0.93366 0.96629 0.93828 0.94843 0.91144 0.94853 0.92756 0.96870 0.88592 0.90983 0.86528 0.90997 0.86975 0.90479 0.96959 0.90040 0.89911 0.86960 0.85006 0.84929 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 2 C 0.05 2.91 5.14 84.66 0.44 3.35 16 3 Si 0.96 48.56 23.43 68.60 1.61 50.16 16 4 H -0.26 -14.09 5.97 99.48 0.59 -13.49 16 5 H -0.33 -17.97 7.11 99.48 0.71 -17.27 16 6 H -0.24 -10.76 5.11 99.48 0.51 -10.25 16 7 C -0.51 -27.39 6.53 25.60 0.17 -27.22 16 8 H 0.03 1.61 7.86 -2.91 -0.02 1.59 16 9 C 0.16 6.80 4.23 85.55 0.36 7.17 16 10 N -0.56 -21.36 3.00 -900.80 -2.70 -24.06 16 11 C 0.10 3.55 4.85 86.30 0.42 3.97 16 12 C 0.07 2.93 4.39 86.30 0.38 3.31 16 13 N -0.54 -19.65 4.73 -895.22 -4.23 -23.88 16 14 C 0.02 0.58 5.43 86.32 0.47 1.05 16 15 C 0.07 1.76 7.01 72.02 0.50 2.26 16 16 O -0.40 -12.13 10.83 -148.98 -1.61 -13.74 16 17 C 0.07 2.07 7.01 72.01 0.50 2.57 16 18 C 0.02 0.71 5.64 86.31 0.49 1.20 16 19 C 0.04 1.19 4.52 86.30 0.39 1.58 16 20 C 0.06 1.68 2.83 31.02 0.09 1.77 16 21 H 0.10 2.81 5.18 -2.38 -0.01 2.80 16 22 C -0.13 -1.78 6.69 31.60 0.21 -1.57 16 23 C -0.17 -2.87 6.97 30.74 0.21 -2.66 16 24 C 0.46 14.75 8.62 71.54 0.62 15.37 16 25 O -0.52 -20.77 18.00 21.59 0.39 -20.38 16 26 O -0.36 -13.03 6.90 -49.66 -0.34 -13.37 16 27 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.02 0.61 7.84 -2.39 -0.02 0.59 16 29 H 0.04 1.76 4.95 -2.39 -0.01 1.75 16 30 H 0.03 1.15 6.30 -2.39 -0.02 1.13 16 31 H 0.07 2.35 7.59 -2.39 -0.02 2.33 16 32 H 0.03 1.66 8.04 -2.39 -0.02 1.65 16 33 H 0.05 2.87 4.99 -2.38 -0.01 2.86 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.10 2.74 6.45 -2.39 -0.02 2.72 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.08 2.77 8.09 -2.39 -0.02 2.75 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 2.07 7.63 -2.39 -0.02 2.05 16 43 H 0.08 1.74 8.03 -2.38 -0.02 1.72 16 44 H 0.11 1.10 7.80 -2.38 -0.02 1.08 16 45 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -78.09 351.25 -0.70 -78.79 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.64 Total: 12.40 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.25 Total: 12.14 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -6.64 Total: -106.00 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.57 Total: -47.49 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.61 Total: 50.16 kcal Total: -78.09 -0.70 -78.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851798274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.976 kcal (2) G-P(sol) polarization free energy of solvation -78.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds