Wall clock time and date at job start Fri Apr 10 2020 18:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47348 * 269.99973 * 3 2 1 5 5 H 1.48505 * 109.47171 * 29.99630 * 3 2 1 6 6 H 1.48497 * 109.47294 * 149.99675 * 3 2 1 7 7 C 1.37873 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99986 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99909 * 179.97438 * 10 9 7 12 12 O 1.21586 * 120.00091 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99696 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99788 * 185.08201 * 13 11 10 15 15 H 1.08996 * 109.46891 * 29.96921 * 14 13 11 16 16 C 1.53001 * 109.46934 * 269.97247 * 14 13 11 17 17 H 1.09001 * 109.82274 * 294.24559 * 16 14 13 18 18 C 1.54387 * 109.82867 * 173.27329 * 16 14 13 19 19 C 1.55305 * 102.25231 * 219.12630 * 18 16 14 20 20 C 1.54949 * 100.94256 * 34.13133 * 19 18 16 21 21 O 1.43232 * 109.83760 * 55.13550 * 16 14 13 22 22 C 1.52992 * 109.47079 * 149.96879 * 14 13 11 23 23 C 1.53004 * 112.90949 * 75.18770 * 22 14 13 24 24 O 1.42902 * 109.47364 * 173.86402 * 23 22 14 25 25 C 1.53785 * 113.61599 * 303.93961 * 22 14 13 26 26 C 1.53785 * 87.17214 * 220.06216 * 25 22 14 27 27 C 1.53780 * 87.08106 * 25.38870 * 26 25 22 28 28 H 0.97001 * 120.00142 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46953 * 60.00301 * 9 7 2 30 30 H 1.08989 * 109.47242 * 299.99995 * 9 7 2 31 31 H 0.97002 * 119.99945 * 0.02562 * 10 9 7 32 32 H 0.96994 * 120.00261 * 5.09180 * 13 11 10 33 33 H 1.09001 * 110.84232 * 337.31539 * 18 16 14 34 34 H 1.09001 * 110.84819 * 100.93435 * 18 16 14 35 35 H 1.08999 * 111.12412 * 276.21083 * 19 18 16 36 36 H 1.09004 * 111.15942 * 152.06677 * 19 18 16 37 37 H 1.08995 * 110.31247 * 204.64344 * 20 19 18 38 38 H 1.09000 * 110.30802 * 82.46772 * 20 19 18 39 39 H 1.08993 * 109.47167 * 293.87073 * 23 22 14 40 40 H 1.09002 * 109.46525 * 53.86259 * 23 22 14 41 41 H 0.96700 * 113.99769 * 179.97438 * 24 23 22 42 42 H 1.08996 * 113.61513 * 105.47121 * 25 22 14 43 43 H 1.08998 * 113.61060 * 334.65211 * 25 22 14 44 44 H 1.08999 * 113.61595 * 139.94003 * 26 25 22 45 45 H 1.08996 * 113.60793 * 270.83995 * 26 25 22 46 46 H 1.08991 * 113.61725 * 89.11848 * 27 26 25 47 47 H 1.09006 * 113.61058 * 219.93534 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6297 -5.9077 0.0016 14 6 2.1452 -7.2858 -0.1102 15 1 1.2216 -7.3003 -0.6889 16 6 1.8799 -7.8481 1.2877 17 1 2.8179 -7.9314 1.8368 18 6 1.2114 -9.2353 1.1761 19 6 0.1727 -9.1944 2.3299 20 6 -0.2304 -7.6984 2.3100 21 8 0.9780 -6.9886 1.9943 22 6 3.2007 -8.1421 -0.8127 23 6 4.3882 -8.4828 0.0899 24 8 5.2543 -9.3960 -0.5868 25 6 3.6111 -7.6041 -2.1936 26 6 3.6232 -9.0647 -2.6746 27 6 2.6169 -9.3609 -1.5501 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 3.1567 -3.4354 0.0009 32 1 3.5808 -5.7326 0.0761 33 1 0.7160 -9.3506 0.2120 34 1 1.9391 -10.0307 1.3372 35 1 0.6313 -9.4651 3.2810 36 1 -0.6823 -9.8346 2.1125 37 1 -0.6034 -7.3940 3.2878 38 1 -0.9850 -7.5201 1.5439 39 1 4.9363 -7.5714 0.3287 40 1 4.0254 -8.9402 1.0104 41 1 6.0308 -9.6561 -0.0725 42 1 4.5938 -7.1327 -2.2042 43 1 2.8438 -6.9939 -2.6701 44 1 3.2119 -9.1985 -3.6751 45 1 4.5850 -9.5601 -2.5415 46 1 1.5770 -9.2314 -1.8495 47 1 2.7963 -10.3085 -1.0421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854025500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:59 Heat of formation + Delta-G solvation = -105.543962 kcal Electronic energy + Delta-G solvation = -27825.843550 eV Core-core repulsion = 24009.379800 eV Total energy + Delta-G solvation = -3816.463750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.84392 -38.81623 -38.51229 -36.02948 -34.32576 -33.70275 -32.23945 -32.05465 -30.35177 -27.93368 -27.07091 -25.63414 -25.33542 -23.04867 -22.45561 -21.62362 -20.45001 -19.89817 -18.78136 -18.22880 -17.51160 -16.53797 -16.16080 -16.04607 -15.70272 -15.30257 -14.92891 -14.68492 -14.56761 -14.27570 -13.87190 -13.57927 -13.21004 -13.08289 -12.94359 -12.67686 -12.31602 -12.04001 -11.89554 -11.81981 -11.69227 -11.47330 -11.31887 -11.16191 -10.88462 -10.84866 -10.81047 -10.57013 -10.42915 -10.24273 -10.21201 -10.04051 -9.37065 -9.27486 -9.13722 -8.62860 -8.38164 -7.58600 -6.07644 -4.13381 3.29320 3.34164 3.36827 3.44309 3.85496 4.00476 4.17882 4.36565 4.39835 4.48365 4.54243 4.58787 4.82147 4.85587 4.90908 5.11315 5.16639 5.24656 5.25766 5.28349 5.30772 5.40360 5.54923 5.55738 5.61030 5.68887 5.73517 5.78768 5.81606 5.91652 5.97044 5.99243 6.08643 6.17688 6.28129 6.49381 7.00700 7.26751 7.33794 7.36613 7.64695 7.69748 7.71517 8.03913 8.16940 8.87671 9.12898 9.47501 9.67255 11.02710 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.003631 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.986040 B = 7708.545797 C = 8853.283222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.270 3.730 10 N -0.734 5.734 11 C 0.699 3.301 12 O -0.588 6.588 13 N -0.746 5.746 14 C 0.178 3.822 15 H 0.095 0.905 16 C 0.065 3.935 17 H 0.074 0.926 18 C -0.146 4.146 19 C -0.157 4.157 20 C 0.053 3.947 21 O -0.350 6.350 22 C -0.093 4.093 23 C 0.096 3.904 24 O -0.563 6.563 25 C -0.119 4.119 26 C -0.136 4.136 27 C -0.117 4.117 28 H 0.264 0.736 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.383 0.617 32 H 0.386 0.614 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.374 0.626 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -23.116 1.074 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.149 3.851 10 N -0.386 5.386 11 C 0.399 3.601 12 O -0.466 6.466 13 N -0.401 5.401 14 C 0.071 3.929 15 H 0.113 0.887 16 C 0.006 3.994 17 H 0.092 0.908 18 C -0.184 4.184 19 C -0.195 4.195 20 C -0.024 4.024 21 O -0.268 6.268 22 C -0.094 4.094 23 C 0.018 3.982 24 O -0.369 6.369 25 C -0.156 4.156 26 C -0.173 4.173 27 C -0.155 4.155 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.215 0.785 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.221 0.779 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.138 -22.830 0.639 23.928 hybrid contribution 1.641 0.915 0.562 1.961 sum 8.779 -21.914 1.201 23.638 Atomic orbital electron populations 1.69987 1.06059 1.27091 1.49261 1.24935 0.94885 0.99303 0.94917 0.86440 0.79618 0.82838 0.78123 1.20550 1.21071 1.19827 1.21251 0.93217 0.90579 1.52681 0.92081 1.18900 0.87769 0.81076 0.97388 1.45667 1.10455 1.04547 1.77917 1.16020 0.85236 0.80790 0.78019 1.90842 1.14071 1.83949 1.57726 1.44986 1.08710 1.04717 1.81719 1.20993 0.96627 0.80514 0.94731 0.88736 1.23287 0.93747 0.88980 0.93415 0.90834 1.23177 0.98526 0.97003 0.99736 1.23294 0.99372 0.97916 0.98923 1.23316 0.88776 0.89576 1.00700 1.88624 1.26675 1.36383 1.75115 1.22148 0.94685 0.97528 0.95015 1.21946 0.90250 0.92282 0.93683 1.86528 1.38655 1.65594 1.46111 1.22806 1.01623 0.96808 0.94374 1.22884 1.00441 0.96633 0.97317 1.22887 0.98690 0.96810 0.97116 0.92581 0.96012 0.95876 0.78546 0.78139 0.90112 0.90412 0.90814 0.90214 0.90284 0.92077 0.93265 0.92916 0.77912 0.91529 0.90018 0.92381 0.88411 0.90328 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.11 9.28 -34.44 -0.32 -15.43 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.51 5.43 -5.19 -0.03 7.48 16 10 N -0.73 -16.47 5.55 -66.42 -0.37 -16.84 16 11 C 0.70 15.02 8.05 -86.91 -0.70 14.32 16 12 O -0.59 -15.03 14.99 -8.07 -0.12 -15.15 16 13 N -0.75 -11.67 4.61 -58.68 -0.27 -11.94 16 14 C 0.18 2.39 1.49 -67.93 -0.10 2.29 16 15 H 0.09 1.54 7.11 -51.93 -0.37 1.17 16 16 C 0.07 0.83 2.76 -26.00 -0.07 0.76 16 17 H 0.07 0.85 6.13 -51.93 -0.32 0.53 16 18 C -0.15 -1.43 5.32 -24.78 -0.13 -1.57 16 19 C -0.16 -1.55 7.16 -24.48 -0.18 -1.72 16 20 C 0.05 0.73 7.78 38.19 0.30 1.03 16 21 O -0.35 -5.95 9.34 -48.59 -0.45 -6.41 16 22 C -0.09 -0.94 0.52 -153.60 -0.08 -1.02 16 23 C 0.10 0.79 5.92 37.16 0.22 1.01 16 24 O -0.56 -4.20 10.54 -35.23 -0.37 -4.57 16 25 C -0.12 -1.31 6.80 -25.91 -0.18 -1.48 16 26 C -0.14 -1.33 7.54 -25.92 -0.20 -1.53 16 27 C -0.12 -1.11 5.25 -25.83 -0.14 -1.25 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.72 8.14 -51.94 -0.42 0.29 16 31 H 0.38 7.45 8.34 -40.82 -0.34 7.11 16 32 H 0.39 5.05 8.24 -40.82 -0.34 4.72 16 33 H 0.08 0.79 6.64 -51.93 -0.34 0.45 16 34 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.40 7.77 -51.93 -0.40 -0.01 16 40 H 0.05 0.40 6.02 -51.93 -0.31 0.09 16 41 H 0.37 1.30 9.12 45.56 0.42 1.71 16 42 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.97 6.19 -51.93 -0.32 0.65 16 46 H 0.08 0.77 7.60 -51.93 -0.39 0.37 16 47 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -35.20 366.31 -8.94 -44.14 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.90 Total: 10.39 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.69 Total: 4.59 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.10 Total: -54.85 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.95 Total: -26.12 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.20 -8.94 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854025500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.402 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds