Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99668 * 2 1 4 4 H 1.48496 * 109.46802 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00535 * 3 2 1 6 6 H 1.48507 * 109.47094 * 60.00445 * 3 2 1 7 7 C 1.37874 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99933 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46672 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99738 * 179.97438 * 10 9 7 12 12 O 1.21594 * 119.99721 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99939 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99808 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.47615 * 325.00245 * 14 13 11 16 16 C 1.52998 * 109.46937 * 205.00041 * 14 13 11 17 17 H 1.09002 * 109.83133 * 295.44446 * 16 14 13 18 18 C 1.54388 * 109.83130 * 56.42488 * 16 14 13 19 19 C 1.55304 * 102.25492 * 140.86989 * 18 16 14 20 20 C 1.54946 * 100.94296 * 325.86457 * 19 18 16 21 21 O 1.43238 * 109.83117 * 174.55249 * 16 14 13 22 22 C 1.53005 * 109.47075 * 85.00707 * 14 13 11 23 23 C 1.52993 * 112.84974 * 53.82698 * 22 14 13 24 24 O 1.42904 * 109.46897 * 185.07416 * 23 22 14 25 25 C 1.53778 * 113.60758 * 282.52422 * 22 14 13 26 26 C 1.53789 * 87.07950 * 220.01765 * 25 22 14 27 27 C 1.53779 * 113.61244 * 185.02911 * 22 14 13 28 28 H 0.97006 * 120.00452 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47054 * 59.99857 * 9 7 2 30 30 H 1.08995 * 109.46637 * 299.99487 * 9 7 2 31 31 H 0.96995 * 120.00131 * 359.97438 * 10 9 7 32 32 H 0.97003 * 120.00251 * 0.02562 * 13 11 10 33 33 H 1.09002 * 110.84223 * 259.05819 * 18 16 14 34 34 H 1.09001 * 110.84809 * 22.47149 * 18 16 14 35 35 H 1.08997 * 111.12650 * 83.78427 * 19 18 16 36 36 H 1.09002 * 111.12265 * 207.90842 * 19 18 16 37 37 H 1.09002 * 110.30898 * 277.53342 * 20 19 18 38 38 H 1.08997 * 110.31433 * 155.35865 * 20 19 18 39 39 H 1.08997 * 109.47190 * 305.07465 * 23 22 14 40 40 H 1.08994 * 109.47436 * 65.07804 * 23 22 14 41 41 H 0.96703 * 114.00090 * 179.97438 * 24 23 22 42 42 H 1.09002 * 113.62093 * 334.56232 * 25 22 14 43 43 H 1.09000 * 113.61717 * 105.47122 * 25 22 14 44 44 H 1.09000 * 113.61182 * 270.88396 * 26 25 22 45 45 H 1.08999 * 113.68669 * 139.99296 * 26 25 22 46 46 H 1.08998 * 113.60869 * 254.52478 * 27 22 14 47 47 H 1.09000 * 113.61872 * 25.34094 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5584 -5.1055 0.0009 13 7 2.6297 -5.9076 -0.0005 14 6 2.1414 -7.2889 0.0006 15 1 1.2273 -7.3507 0.5910 16 6 3.2046 -8.2052 0.6095 17 1 4.0936 -8.2102 -0.0213 18 6 3.5690 -7.7148 2.0273 19 6 3.7276 -9.0487 2.8068 20 6 2.6532 -9.9239 2.1138 21 8 2.6877 -9.5355 0.7312 22 6 1.8514 -7.7285 -1.4360 23 6 3.0461 -7.5295 -2.3707 24 8 2.6620 -7.8498 -3.7094 25 6 0.5304 -7.1741 -1.9949 26 6 0.3187 -8.5515 -2.6452 27 6 1.2165 -9.1255 -1.5364 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8902 30 1 0.6248 -2.5570 0.8897 31 1 3.1567 -3.4353 -0.0009 32 1 3.5834 -5.7304 -0.0009 33 1 4.5061 -7.1581 2.0163 34 1 2.7653 -7.1098 2.4470 35 1 4.7243 -9.4679 2.6694 36 1 3.5030 -8.9143 3.8650 37 1 1.6697 -9.7230 2.5387 38 1 2.9018 -10.9802 2.2163 39 1 3.3739 -6.4910 -2.3254 40 1 3.8624 -8.1821 -2.0611 41 1 3.3717 -7.7457 -4.3579 42 1 -0.2042 -6.9370 -1.2253 43 1 0.6655 -6.3673 -2.7153 44 1 0.7499 -8.6343 -3.6428 45 1 -0.7117 -8.9039 -2.5988 46 1 1.9055 -9.8940 -1.8865 47 1 0.6708 -9.4225 -0.6408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854025502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = -107.712797 kcal Electronic energy + Delta-G solvation = -27853.105979 eV Core-core repulsion = 24036.548181 eV Total energy + Delta-G solvation = -3816.557798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.73955 -38.97720 -38.55314 -35.70787 -34.56291 -33.95045 -32.31937 -32.16655 -30.22514 -28.07018 -27.05435 -25.35591 -25.15199 -23.00127 -22.47471 -21.76542 -20.61659 -20.05407 -18.41243 -18.04902 -17.55288 -16.96798 -16.34448 -15.88926 -15.59740 -15.13651 -15.00274 -14.66055 -14.46831 -14.34650 -13.96476 -13.68840 -13.49091 -13.00853 -12.89547 -12.43383 -12.09472 -11.97513 -11.94330 -11.89268 -11.76499 -11.47520 -11.40552 -11.21114 -11.02436 -10.91691 -10.89275 -10.34152 -10.26296 -10.08872 -9.92304 -9.74367 -9.42281 -9.33596 -9.30582 -8.71808 -8.57419 -7.73537 -6.14518 -4.20905 3.13277 3.23991 3.31392 3.34229 3.83156 4.00271 4.24355 4.28430 4.33665 4.38862 4.64911 4.80613 4.92343 4.98437 5.01741 5.13190 5.17376 5.21728 5.24583 5.32845 5.45328 5.49379 5.54614 5.55471 5.58919 5.67369 5.82939 5.85565 6.00098 6.13027 6.17789 6.30676 6.34783 6.60468 6.68692 6.75758 6.93630 6.99650 7.13537 7.54582 7.56865 7.59740 7.66862 7.92485 8.05880 8.78426 8.97214 9.36772 9.51049 10.95703 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015379 B = 0.003645 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.204518 B = 7680.573920 C = 8676.190353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.269 3.731 10 N -0.730 5.730 11 C 0.696 3.304 12 O -0.591 6.591 13 N -0.750 5.750 14 C 0.177 3.823 15 H 0.095 0.905 16 C 0.076 3.924 17 H 0.080 0.920 18 C -0.150 4.150 19 C -0.156 4.156 20 C 0.047 3.953 21 O -0.363 6.363 22 C -0.093 4.093 23 C 0.103 3.897 24 O -0.562 6.562 25 C -0.107 4.107 26 C -0.145 4.145 27 C -0.101 4.101 28 H 0.265 0.735 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.384 0.616 32 H 0.387 0.613 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.370 0.630 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.529 -20.062 0.845 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.383 5.383 11 C 0.396 3.604 12 O -0.470 6.470 13 N -0.408 5.408 14 C 0.071 3.929 15 H 0.113 0.887 16 C 0.018 3.982 17 H 0.098 0.902 18 C -0.188 4.188 19 C -0.194 4.194 20 C -0.029 4.029 21 O -0.281 6.281 22 C -0.094 4.094 23 C 0.026 3.974 24 O -0.367 6.367 25 C -0.144 4.144 26 C -0.182 4.182 27 C -0.139 4.139 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.216 0.784 32 H 0.220 0.780 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.216 0.784 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.562 -20.337 0.988 22.088 hybrid contribution 2.027 1.490 -0.007 2.516 sum 10.590 -18.847 0.981 21.640 Atomic orbital electron populations 1.69990 1.06069 1.27113 1.49063 1.24939 0.94890 0.99360 0.94821 0.86382 0.79784 0.83102 0.77731 1.19712 1.20825 1.20835 1.21262 0.93243 0.90493 1.52929 0.91997 1.18951 0.87737 0.81041 0.97538 1.45710 1.10636 1.04457 1.77453 1.16071 0.85247 0.80867 0.78252 1.90862 1.14027 1.83946 1.58125 1.45081 1.08580 1.04719 1.82385 1.20936 0.97560 0.79688 0.94739 0.88734 1.22918 0.95648 0.83115 0.96545 0.90179 1.23173 1.03277 0.97844 0.94489 1.23257 0.99962 0.95564 1.00589 1.23411 0.98372 0.99091 0.82051 1.88499 1.85715 1.29168 1.24683 1.22170 0.95138 0.98474 0.93633 1.21766 0.95224 0.98320 0.82118 1.86568 1.41129 1.91422 1.17540 1.22773 0.95759 0.96142 0.99759 1.22990 0.98608 0.97227 0.99368 1.22641 0.98249 0.94523 0.98537 0.92542 0.95777 0.95843 0.78385 0.77990 0.89986 0.89775 0.90524 0.89966 0.92113 0.89780 0.93447 0.94068 0.78403 0.89236 0.92258 0.89030 0.92958 0.92093 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.27 7.13 5.43 -5.19 -0.03 7.10 16 10 N -0.73 -15.23 5.55 -66.41 -0.37 -15.60 16 11 C 0.70 13.73 8.32 -86.92 -0.72 13.01 16 12 O -0.59 -14.09 13.78 5.28 0.07 -14.02 16 13 N -0.75 -10.55 3.76 -58.68 -0.22 -10.77 16 14 C 0.18 2.36 1.32 -67.93 -0.09 2.27 16 15 H 0.09 1.53 7.49 -51.93 -0.39 1.14 16 16 C 0.08 0.79 3.01 -26.01 -0.08 0.71 16 17 H 0.08 0.75 6.83 -51.93 -0.35 0.39 16 18 C -0.15 -1.36 6.05 -24.78 -0.15 -1.51 16 19 C -0.16 -1.17 7.16 -24.48 -0.18 -1.34 16 20 C 0.05 0.40 7.78 38.18 0.30 0.70 16 21 O -0.36 -3.97 8.77 -35.23 -0.31 -4.27 16 22 C -0.09 -1.26 0.68 -153.70 -0.11 -1.37 16 23 C 0.10 1.23 6.08 37.15 0.23 1.46 16 24 O -0.56 -6.65 10.54 -35.23 -0.37 -7.02 16 25 C -0.11 -1.78 5.76 -25.92 -0.15 -1.93 16 26 C -0.14 -2.07 7.54 -25.91 -0.20 -2.27 16 27 C -0.10 -1.35 5.48 -25.92 -0.14 -1.49 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.38 6.84 8.33 -40.82 -0.34 6.50 16 32 H 0.39 4.31 8.58 -40.82 -0.35 3.96 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.59 7.54 -51.93 -0.39 0.19 16 40 H 0.04 0.42 7.07 -51.93 -0.37 0.05 16 41 H 0.37 2.74 9.12 45.56 0.42 3.16 16 42 H 0.09 1.71 6.84 -51.93 -0.36 1.35 16 43 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 44 H 0.09 1.33 6.18 -51.93 -0.32 1.01 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 47 H 0.08 1.06 7.57 -51.93 -0.39 0.67 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -33.17 366.52 -8.70 -41.87 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -7.01 Total: 11.87 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.73 Total: 2.03 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.15 Total: -51.79 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.61 Total: -25.31 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.17 -8.70 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854025502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.847 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds