Wall clock time and date at job start Fri Apr 10 2020 18:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99668 * 2 1 4 4 H 1.48496 * 109.46802 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00535 * 3 2 1 6 6 H 1.48507 * 109.47094 * 60.00445 * 3 2 1 7 7 C 1.37874 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99933 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46672 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99738 * 179.97438 * 10 9 7 12 12 O 1.21594 * 119.99721 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99939 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99808 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.47615 * 325.00245 * 14 13 11 16 16 C 1.52998 * 109.46937 * 205.00041 * 14 13 11 17 17 H 1.09002 * 109.83133 * 295.44446 * 16 14 13 18 18 C 1.54388 * 109.83130 * 56.42488 * 16 14 13 19 19 C 1.55304 * 102.25492 * 140.86989 * 18 16 14 20 20 C 1.54946 * 100.94296 * 325.86457 * 19 18 16 21 21 O 1.43238 * 109.83117 * 174.55249 * 16 14 13 22 22 C 1.53005 * 109.47075 * 85.00707 * 14 13 11 23 23 C 1.52993 * 112.84974 * 53.82698 * 22 14 13 24 24 O 1.42904 * 109.46897 * 185.07416 * 23 22 14 25 25 C 1.53778 * 113.60758 * 282.52422 * 22 14 13 26 26 C 1.53789 * 87.07950 * 220.01765 * 25 22 14 27 27 C 1.53779 * 113.61244 * 185.02911 * 22 14 13 28 28 H 0.97006 * 120.00452 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47054 * 59.99857 * 9 7 2 30 30 H 1.08995 * 109.46637 * 299.99487 * 9 7 2 31 31 H 0.96995 * 120.00131 * 359.97438 * 10 9 7 32 32 H 0.97003 * 120.00251 * 0.02562 * 13 11 10 33 33 H 1.09002 * 110.84223 * 259.05819 * 18 16 14 34 34 H 1.09001 * 110.84809 * 22.47149 * 18 16 14 35 35 H 1.08997 * 111.12650 * 83.78427 * 19 18 16 36 36 H 1.09002 * 111.12265 * 207.90842 * 19 18 16 37 37 H 1.09002 * 110.30898 * 277.53342 * 20 19 18 38 38 H 1.08997 * 110.31433 * 155.35865 * 20 19 18 39 39 H 1.08997 * 109.47190 * 305.07465 * 23 22 14 40 40 H 1.08994 * 109.47436 * 65.07804 * 23 22 14 41 41 H 0.96703 * 114.00090 * 179.97438 * 24 23 22 42 42 H 1.09002 * 113.62093 * 334.56232 * 25 22 14 43 43 H 1.09000 * 113.61717 * 105.47122 * 25 22 14 44 44 H 1.09000 * 113.61182 * 270.88396 * 26 25 22 45 45 H 1.08999 * 113.68669 * 139.99296 * 26 25 22 46 46 H 1.08998 * 113.60869 * 254.52478 * 27 22 14 47 47 H 1.09000 * 113.61872 * 25.34094 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5584 -5.1055 0.0009 13 7 2.6297 -5.9076 -0.0005 14 6 2.1414 -7.2889 0.0006 15 1 1.2273 -7.3507 0.5910 16 6 3.2046 -8.2052 0.6095 17 1 4.0936 -8.2102 -0.0213 18 6 3.5690 -7.7148 2.0273 19 6 3.7276 -9.0487 2.8068 20 6 2.6532 -9.9239 2.1138 21 8 2.6877 -9.5355 0.7312 22 6 1.8514 -7.7285 -1.4360 23 6 3.0461 -7.5295 -2.3707 24 8 2.6620 -7.8498 -3.7094 25 6 0.5304 -7.1741 -1.9949 26 6 0.3187 -8.5515 -2.6452 27 6 1.2165 -9.1255 -1.5364 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8902 30 1 0.6248 -2.5570 0.8897 31 1 3.1567 -3.4353 -0.0009 32 1 3.5834 -5.7304 -0.0009 33 1 4.5061 -7.1581 2.0163 34 1 2.7653 -7.1098 2.4470 35 1 4.7243 -9.4679 2.6694 36 1 3.5030 -8.9143 3.8650 37 1 1.6697 -9.7230 2.5387 38 1 2.9018 -10.9802 2.2163 39 1 3.3739 -6.4910 -2.3254 40 1 3.8624 -8.1821 -2.0611 41 1 3.3717 -7.7457 -4.3579 42 1 -0.2042 -6.9370 -1.2253 43 1 0.6655 -6.3673 -2.7153 44 1 0.7499 -8.6343 -3.6428 45 1 -0.7117 -8.9039 -2.5988 46 1 1.9055 -9.8940 -1.8865 47 1 0.6708 -9.4225 -0.6408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854025502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:06 Heat of formation + Delta-G solvation = -133.723946 kcal Electronic energy + Delta-G solvation = -27854.233907 eV Core-core repulsion = 24036.548181 eV Total energy + Delta-G solvation = -3817.685726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.88263 -40.23245 -39.73135 -36.71238 -36.16201 -35.63443 -34.30030 -32.91670 -31.43484 -29.13397 -28.86131 -26.44531 -26.41523 -24.67520 -23.75006 -22.48334 -21.92459 -21.47569 -19.87996 -19.37829 -18.54618 -18.07293 -17.88885 -17.10158 -16.86377 -16.52818 -16.43851 -16.01661 -15.67405 -15.45340 -15.34824 -14.94534 -14.78370 -14.22047 -14.02089 -13.99323 -13.80156 -13.42405 -13.14053 -12.94284 -12.85571 -12.77202 -12.66612 -12.53807 -12.26143 -12.20246 -12.10119 -11.73662 -11.48053 -11.42568 -11.21676 -11.14322 -10.89350 -10.79918 -10.74549 -10.40897 -10.03758 -9.53221 -8.27504 -6.43763 1.43428 1.45062 1.58016 1.79978 2.32845 2.39240 2.97548 3.07802 3.31711 3.37939 3.56231 3.62112 3.81769 3.89759 3.98924 4.05775 4.10950 4.21286 4.30110 4.41994 4.44743 4.58742 4.68885 4.80693 4.85873 4.90219 4.95598 4.99845 5.00426 5.01369 5.04617 5.13563 5.17931 5.24219 5.29101 5.29754 5.45776 5.51540 5.60995 5.71584 5.73003 5.87891 6.08936 6.29344 6.68973 6.98931 7.26164 7.37194 7.81342 8.85062 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015379 B = 0.003645 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.204518 B = 7680.573920 C = 8676.190353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.289 3.711 10 N -0.724 5.724 11 C 0.695 3.305 12 O -0.636 6.636 13 N -0.721 5.721 14 C 0.179 3.821 15 H 0.059 0.941 16 C 0.085 3.915 17 H 0.106 0.894 18 C -0.152 4.152 19 C -0.146 4.146 20 C 0.039 3.961 21 O -0.376 6.376 22 C -0.088 4.088 23 C 0.107 3.893 24 O -0.579 6.579 25 C -0.118 4.118 26 C -0.137 4.137 27 C -0.086 4.086 28 H 0.268 0.732 29 H -0.019 1.019 30 H -0.017 1.017 31 H 0.403 0.597 32 H 0.409 0.591 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.391 0.609 42 H 0.054 0.946 43 H 0.028 0.972 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.542 -21.009 0.963 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.102 0.898 9 C 0.166 3.834 10 N -0.378 5.378 11 C 0.395 3.605 12 O -0.518 6.518 13 N -0.379 5.379 14 C 0.073 3.927 15 H 0.077 0.923 16 C 0.026 3.974 17 H 0.123 0.877 18 C -0.190 4.190 19 C -0.184 4.184 20 C -0.037 4.037 21 O -0.295 6.295 22 C -0.089 4.089 23 C 0.029 3.971 24 O -0.387 6.387 25 C -0.156 4.156 26 C -0.174 4.174 27 C -0.124 4.124 28 H 0.077 0.923 29 H -0.001 1.001 30 H 0.001 0.999 31 H 0.238 0.762 32 H 0.245 0.755 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.122 0.878 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.240 0.760 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.669 -21.342 1.101 24.843 hybrid contribution 0.682 1.702 -0.061 1.834 sum 13.350 -19.640 1.040 23.771 Atomic orbital electron populations 1.70159 1.08326 1.28421 1.50163 1.26064 0.95739 1.03878 0.93954 0.85108 0.79132 0.77328 0.77598 1.17493 1.20614 1.20491 1.21634 0.94303 0.90453 1.52568 0.89767 1.18338 0.88045 0.83413 0.93651 1.45258 1.10713 1.03803 1.78004 1.16207 0.85186 0.81365 0.77735 1.90849 1.16534 1.84611 1.59795 1.44700 1.08857 1.03880 1.80473 1.20978 0.97702 0.79473 0.94577 0.92310 1.22877 0.94637 0.82393 0.97480 0.87686 1.23185 1.03289 0.98722 0.93766 1.23246 1.00446 0.94036 1.00660 1.23590 0.98492 1.00503 0.81090 1.88479 1.85905 1.28919 1.26153 1.22213 0.94583 0.98013 0.94114 1.21724 0.94554 0.98796 0.81990 1.86504 1.42831 1.91397 1.17931 1.22669 0.97619 0.96547 0.98759 1.22957 0.99208 0.95360 0.99877 1.22499 0.97862 0.94412 0.97641 0.92334 1.00112 0.99861 0.76167 0.75490 0.87884 0.92318 0.88639 0.89152 0.93178 0.87797 0.93967 0.90941 0.75968 0.92753 0.95265 0.88573 0.92809 0.90600 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.99 42.40 29.54 68.60 2.03 44.42 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.10 9.28 25.60 0.24 -29.86 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.10 16 9 C 0.29 16.14 5.43 85.63 0.46 16.60 16 10 N -0.72 -30.90 5.55 -482.29 -2.68 -33.58 16 11 C 0.70 28.52 8.32 179.06 1.49 30.01 16 12 O -0.64 -32.64 13.78 -4.01 -0.06 -32.69 16 13 N -0.72 -20.07 3.76 -457.82 -1.72 -21.79 16 14 C 0.18 4.73 1.32 44.99 0.06 4.79 16 15 H 0.06 2.01 7.49 -2.39 -0.02 2.00 16 16 C 0.08 1.55 3.01 31.06 0.09 1.64 16 17 H 0.11 1.48 6.83 -2.39 -0.02 1.46 16 18 C -0.15 -2.40 6.05 31.86 0.19 -2.21 16 19 C -0.15 -1.76 7.16 32.05 0.23 -1.53 16 20 C 0.04 0.59 7.78 72.65 0.57 1.16 16 21 O -0.38 -7.39 8.77 -148.98 -1.31 -8.70 16 22 C -0.09 -2.37 0.68 -51.66 -0.04 -2.41 16 23 C 0.11 2.30 6.08 71.98 0.44 2.74 16 24 O -0.58 -12.54 10.54 -148.98 -1.57 -14.11 16 25 C -0.12 -4.20 5.76 31.12 0.18 -4.02 16 26 C -0.14 -3.97 7.54 31.12 0.23 -3.74 16 27 C -0.09 -2.22 5.48 31.12 0.17 -2.05 16 28 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 29 H -0.02 -1.22 8.14 -2.39 -0.02 -1.23 16 30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H 0.40 13.99 8.33 -92.71 -0.77 13.22 16 32 H 0.41 8.16 8.58 -92.71 -0.80 7.37 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.25 7.85 -2.39 -0.02 1.23 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.95 7.54 -2.39 -0.02 0.93 16 40 H 0.07 1.15 7.07 -2.39 -0.02 1.13 16 41 H 0.39 4.76 9.12 -74.06 -0.68 4.08 16 42 H 0.05 2.29 6.84 -2.39 -0.02 2.27 16 43 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 44 H 0.10 2.74 6.18 -2.39 -0.01 2.73 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 47 H 0.07 1.96 7.57 -2.39 -0.02 1.94 16 Total: -1.00 -77.36 366.52 -1.49 -78.85 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -1.25 Total: 32.43 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 4.78 Total: 11.76 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.12 Total: -111.96 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -2.93 Total: -55.50 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -77.36 -1.49 -78.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854025502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.876 kcal (2) G-P(sol) polarization free energy of solvation -77.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds