Wall clock time and date at job start Fri Apr 10 2020 18:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21285 * 120.00032 * 2 1 4 4 N 1.34772 * 120.00181 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00516 * 179.97438 * 4 2 1 6 6 H 1.09006 * 109.47025 * 34.99944 * 5 4 2 7 7 C 1.50695 * 109.47612 * 155.00042 * 5 4 2 8 8 O 1.20830 * 119.99695 * 359.97438 * 7 5 4 9 9 O 1.34233 * 120.00443 * 180.02562 * 7 5 4 10 10 C 1.45203 * 117.00216 * 179.97438 * 9 7 5 11 11 C 1.53041 * 109.45873 * 270.06861 * 10 9 7 12 12 C 1.53190 * 109.31249 * 178.61720 * 11 10 9 13 13 N 1.46919 * 108.77563 * 54.62884 * 12 11 10 14 14 C 1.36946 * 120.62791 * 126.41749 * 13 12 11 15 15 H 1.08001 * 119.99718 * 331.82372 * 14 13 12 16 16 C 1.38810 * 120.00117 * 151.82357 * 14 13 12 17 17 N 1.31622 * 119.99791 * 343.08068 * 16 14 13 18 18 Si 1.86800 * 120.00151 * 163.07926 * 16 14 13 19 19 H 1.48499 * 109.47015 * 60.00031 * 18 16 14 20 20 H 1.48501 * 109.47145 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47060 * 299.99871 * 18 16 14 22 22 C 1.46921 * 118.74373 * 306.39445 * 13 12 11 23 23 C 1.53042 * 109.45971 * 149.99913 * 10 9 7 24 24 C 1.53006 * 109.47299 * 275.00168 * 5 4 2 25 25 C 1.52993 * 109.47065 * 304.99791 * 24 5 4 26 26 C 1.53005 * 109.46680 * 64.99817 * 24 5 4 27 27 H 1.09001 * 109.47104 * 240.00220 * 1 2 3 28 28 H 1.09004 * 109.47171 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47178 * 119.99992 * 1 2 3 30 30 H 0.97003 * 120.00161 * 359.97438 * 4 2 1 31 31 H 1.08996 * 109.44500 * 30.03459 * 10 9 7 32 32 H 1.09000 * 109.49517 * 298.56255 * 11 10 9 33 33 H 1.08996 * 109.49647 * 58.66076 * 11 10 9 34 34 H 1.08998 * 109.58321 * 294.84560 * 12 11 10 35 35 H 1.08995 * 109.70564 * 174.49135 * 12 11 10 36 36 H 0.96999 * 119.99934 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.58471 * 293.82056 * 22 13 12 38 38 H 1.09004 * 109.70588 * 173.46375 * 22 13 12 39 39 H 1.09005 * 109.49601 * 301.33981 * 23 10 9 40 40 H 1.08999 * 109.49468 * 61.39929 * 23 10 9 41 41 H 1.09004 * 109.46975 * 184.99442 * 24 5 4 42 42 H 1.08998 * 109.47157 * 59.99722 * 25 24 5 43 43 H 1.08998 * 109.47188 * 180.02562 * 25 24 5 44 44 H 1.09001 * 109.47211 * 299.99971 * 25 24 5 45 45 H 1.08997 * 109.47383 * 60.00144 * 26 24 5 46 46 H 1.08998 * 109.46540 * 180.02562 * 26 24 5 47 47 H 1.08998 * 109.47078 * 299.99994 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0094 -0.3250 0.5887 7 6 4.1484 -2.4545 0.6010 8 8 3.3634 -3.2863 0.9905 9 8 5.4682 -2.6765 0.7048 10 6 5.8801 -3.9379 1.2944 11 6 6.0231 -3.7701 2.8089 12 6 6.4241 -5.1111 3.4315 13 7 7.6367 -5.5999 2.7613 14 6 8.7451 -5.9441 3.4882 15 1 8.9359 -5.4694 4.4393 16 6 9.6233 -6.9032 3.0026 17 7 9.2447 -7.7134 2.0369 18 14 11.3425 -7.0438 3.7195 19 1 11.2505 -7.3437 5.1710 20 1 12.0772 -8.1367 3.0333 21 1 12.0668 -5.7622 3.5238 22 6 7.6375 -5.7129 1.2964 23 6 7.2230 -4.3652 0.6977 24 6 4.1553 -1.0424 -1.4374 25 6 3.5450 -2.1541 -2.2931 26 6 3.7504 0.3193 -2.0055 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 1.6959 -2.0072 0.0013 31 1 5.1298 -4.6996 1.0827 32 1 6.7909 -3.0263 3.0216 33 1 5.0725 -3.4432 3.2300 34 1 5.6173 -5.8317 3.2981 35 1 6.6229 -4.9778 4.4949 36 1 9.8582 -8.3838 1.6979 37 1 6.9296 -6.4826 0.9890 38 1 8.6367 -5.9755 0.9486 39 1 7.1263 -4.4618 -0.3838 40 1 7.9793 -3.6154 0.9298 41 1 5.2417 -1.1315 -1.4468 42 1 2.4587 -2.0650 -2.2836 43 1 3.9083 -2.0655 -3.3169 44 1 3.8334 -3.1242 -1.8883 45 1 4.1852 1.1113 -1.3959 46 1 4.1129 0.4079 -3.0296 47 1 2.6641 0.4084 -1.9961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860610561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:12 Heat of formation + Delta-G solvation = -114.508470 kcal Electronic energy + Delta-G solvation = -27264.091280 eV Core-core repulsion = 23447.238800 eV Total energy + Delta-G solvation = -3816.852481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07987 -39.77394 -37.69340 -36.39377 -35.92199 -33.46559 -32.73589 -30.51229 -30.27029 -29.70689 -27.66222 -27.30189 -25.13254 -22.67215 -22.21401 -21.53856 -20.93772 -19.91507 -19.39347 -17.95158 -17.26873 -16.88535 -16.69801 -16.21721 -15.72188 -15.27455 -14.82925 -14.52869 -14.06237 -14.00905 -13.70566 -13.59492 -13.40274 -13.08224 -12.89241 -12.86669 -12.63781 -12.56662 -12.35918 -12.11118 -11.66341 -11.58318 -11.34578 -11.25296 -11.14704 -11.01076 -10.79942 -10.75865 -10.52137 -10.31966 -10.24475 -10.17725 -9.94673 -9.72230 -9.52406 -9.37309 -8.53018 -6.77457 -5.85743 -3.28628 2.13731 2.27715 2.45400 3.14824 3.36131 3.41772 3.43199 4.41391 4.44763 4.44884 4.61133 4.69496 4.93534 4.93959 5.03783 5.18615 5.23698 5.30895 5.35159 5.37249 5.47217 5.50187 5.51342 5.63166 5.66434 5.73128 5.82928 5.93127 5.97800 6.10595 6.16840 6.19530 6.28423 6.35029 6.44558 6.52453 6.67356 6.75157 6.88864 7.17208 7.23136 7.52600 7.73466 7.75873 7.91509 8.37807 9.13704 9.76242 10.32623 11.23555 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030322 B = 0.002812 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.197642 B = 9956.341505 C =10259.083069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.515 3.485 3 O -0.539 6.539 4 N -0.714 5.714 5 C 0.156 3.844 6 H 0.124 0.876 7 C 0.459 3.541 8 O -0.508 6.508 9 O -0.349 6.349 10 C 0.099 3.901 11 C -0.147 4.147 12 C 0.149 3.851 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.904 5.904 18 Si 0.905 3.095 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.175 3.825 23 C -0.135 4.135 24 C -0.102 4.102 25 C -0.150 4.150 26 C -0.137 4.137 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.410 0.590 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.061 0.939 36 H 0.256 0.744 37 H 0.022 0.978 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.318 13.326 -8.239 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.302 3.698 3 O -0.416 6.416 4 N -0.369 5.369 5 C 0.050 3.950 6 H 0.141 0.859 7 C 0.301 3.699 8 O -0.396 6.396 9 O -0.265 6.265 10 C 0.045 3.955 11 C -0.186 4.186 12 C 0.023 3.977 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.548 5.548 18 Si 0.734 3.266 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.048 3.952 23 C -0.175 4.175 24 C -0.122 4.122 25 C -0.207 4.207 26 C -0.194 4.194 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.247 0.753 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.972 13.637 -8.160 21.834 hybrid contribution 0.558 -0.742 0.440 1.027 sum -14.414 12.896 -7.720 20.825 Atomic orbital electron populations 1.21913 0.91178 1.05634 1.04544 1.20763 0.90656 0.83092 0.75249 1.90748 1.70588 1.31245 1.48999 1.45842 1.05476 1.09975 1.75642 1.20487 0.81753 0.94591 0.98185 0.85854 1.23399 0.82263 0.88373 0.75837 1.90642 1.56820 1.46169 1.46005 1.86553 1.23640 1.42641 1.73642 1.23022 0.97591 0.81366 0.93480 1.22477 1.00834 1.01589 0.93724 1.20851 0.89734 0.91095 0.96059 1.44109 1.10153 1.75799 1.01414 1.19156 0.99236 1.16170 1.04002 0.91537 1.25068 0.99852 0.95360 0.99221 1.70005 1.34784 1.19674 1.30313 0.86333 0.84361 0.77259 0.78602 1.20815 1.21575 1.20921 1.20806 1.02040 0.89225 0.83093 1.22477 0.93804 1.01938 0.99255 1.21532 1.01706 0.97123 0.91816 1.21859 1.00991 0.97780 1.00064 1.21857 1.02007 0.95287 1.00241 0.89163 0.88758 0.89299 0.75262 0.90257 0.91244 0.92716 0.96075 0.92031 0.93424 0.96004 0.88502 0.92326 0.91345 0.88700 0.92440 0.91848 0.92714 0.91780 0.92857 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.32 36.00 0.37 -0.59 16 2 C 0.51 4.90 6.51 -10.99 -0.07 4.83 16 3 O -0.54 -6.94 14.23 5.55 0.08 -6.86 16 4 N -0.71 -6.84 3.92 -54.93 -0.22 -7.05 16 5 C 0.16 1.77 2.47 -69.08 -0.17 1.60 16 6 H 0.12 1.47 7.58 -51.93 -0.39 1.07 16 7 C 0.46 6.51 6.27 36.00 0.23 6.74 16 8 O -0.51 -8.12 15.06 -18.75 -0.28 -8.40 16 9 O -0.35 -5.51 9.69 -39.27 -0.38 -5.89 16 10 C 0.10 1.77 2.41 -26.69 -0.06 1.71 16 11 C -0.15 -2.69 5.72 -26.61 -0.15 -2.84 16 12 C 0.15 3.16 6.52 -3.72 -0.02 3.13 16 13 N -0.59 -14.68 2.99 -172.33 -0.52 -15.20 16 14 C -0.26 -6.94 9.58 -15.06 -0.14 -7.08 16 15 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 16 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 17 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 18 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.17 4.07 5.30 -3.72 -0.02 4.05 16 23 C -0.14 -2.57 5.74 -26.61 -0.15 -2.72 16 24 C -0.10 -1.03 2.71 -90.62 -0.25 -1.28 16 25 C -0.15 -1.41 8.79 37.15 0.33 -1.08 16 26 C -0.14 -1.34 7.80 37.16 0.29 -1.05 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.52 8.12 -51.93 -0.42 0.09 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.41 3.55 7.79 -40.82 -0.32 3.23 16 31 H 0.08 1.50 7.16 -51.93 -0.37 1.12 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 2.50 6.07 -51.93 -0.31 2.19 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.09 0.99 8.00 -51.93 -0.42 0.57 16 42 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 45 H 0.06 0.69 7.85 -51.93 -0.41 0.28 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.59 5.65 -51.93 -0.29 0.30 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -31.00 371.66 -7.94 -38.94 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.90 Total: 2.23 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 0.08 Total: 5.43 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.11 Total: -47.37 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.58 Total: -21.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.00 -7.94 -38.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860610561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.571 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds