Wall clock time and date at job start Fri Apr 10 2020 18:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00052 * 2 1 4 4 C 1.53003 * 109.47332 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46943 * 65.00456 * 4 3 2 6 6 C 1.46504 * 119.99704 * 269.99999 * 5 4 3 7 7 C 1.50694 * 109.46822 * 269.99831 * 6 5 4 8 8 H 1.07997 * 120.00116 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99715 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00008 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47116 * 89.99928 * 11 9 7 13 13 H 1.48503 * 109.47206 * 210.00083 * 11 9 7 14 14 H 1.48502 * 109.46991 * 329.99963 * 11 9 7 15 15 C 1.34771 * 120.00091 * 89.99578 * 5 4 3 16 16 O 1.21587 * 120.00038 * 0.02562 * 15 5 4 17 17 N 1.34776 * 119.99923 * 180.02562 * 15 5 4 18 18 C 1.39482 * 119.99935 * 180.02562 * 17 15 5 19 19 C 1.36065 * 126.21727 * 0.02624 * 18 17 15 20 20 C 1.40155 * 107.82202 * 180.02562 * 19 18 17 21 21 O 1.35989 * 125.84261 * 179.97438 * 20 19 18 22 22 C 1.42894 * 116.99897 * 179.97438 * 21 20 19 23 23 N 1.31114 * 108.32163 * 359.97438 * 20 19 18 24 24 N 1.35804 * 126.21986 * 180.02562 * 18 17 15 25 25 C 1.46505 * 126.04363 * 0.04127 * 24 18 17 26 26 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47235 * 299.99579 * 1 2 3 28 28 H 1.08995 * 109.47376 * 59.99705 * 1 2 3 29 29 H 1.09004 * 109.46851 * 60.00653 * 3 2 1 30 30 H 1.09001 * 109.47334 * 300.00261 * 3 2 1 31 31 H 1.08995 * 109.47217 * 305.00820 * 4 3 2 32 32 H 1.08996 * 109.46998 * 185.00076 * 4 3 2 33 33 H 1.09002 * 109.46967 * 29.99843 * 6 5 4 34 34 H 1.09002 * 109.46657 * 149.99449 * 6 5 4 35 35 H 0.97002 * 120.00210 * 179.97438 * 10 9 7 36 36 H 0.97001 * 120.00381 * 0.02562 * 17 15 5 37 37 H 1.07998 * 126.09347 * 0.02562 * 19 18 17 38 38 H 1.09002 * 109.47485 * 60.00333 * 22 21 20 39 39 H 1.09006 * 109.46969 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47434 * 299.99290 * 22 21 20 41 41 H 1.09002 * 109.46908 * 269.98164 * 25 24 18 42 42 H 1.09001 * 109.46949 * 29.97741 * 25 24 18 43 43 H 1.08996 * 109.47137 * 149.97430 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2510 6 6 4.1063 -0.8925 -1.3405 7 6 5.5017 -1.2980 -0.9414 8 1 6.2200 -0.5461 -0.6499 9 6 5.8614 -2.6291 -0.9485 10 7 4.9867 -3.5447 -1.3040 11 14 7.5913 -3.1318 -0.4546 12 1 7.6348 -3.3842 1.0082 13 1 7.9741 -4.3686 -1.1819 14 1 8.5403 -2.0422 -0.7973 15 6 4.2632 1.3330 -2.3201 16 8 4.1560 2.5419 -2.2457 17 7 4.6686 0.7620 -3.4716 18 6 4.9657 1.5579 -4.5779 19 6 4.8912 2.9153 -4.6350 20 6 5.2729 3.3121 -5.9238 21 8 5.3293 4.5923 -6.3790 22 6 5.7464 4.7818 -7.7325 23 7 5.5663 2.2378 -6.6158 24 7 5.3820 1.1189 -5.7937 25 6 5.5986 -0.2782 -6.1779 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8464 -0.8900 31 1 3.8507 0.5685 0.8426 32 1 3.9784 2.1765 0.0902 33 1 3.3858 -1.3631 -0.6715 34 1 3.9137 -1.2121 -2.3646 35 1 5.2399 -4.4811 -1.3093 36 1 4.7538 -0.2024 -3.5311 37 1 4.5912 3.5704 -3.8304 38 1 5.0586 4.2636 -8.4006 39 1 5.7471 5.8464 -7.9668 40 1 6.7513 4.3803 -7.8626 41 1 6.6297 -0.5585 -5.9627 42 1 4.9223 -0.9195 -5.6127 43 1 5.4048 -0.3960 -7.2440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881248840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:18 Heat of formation + Delta-G solvation = -10.433037 kcal Electronic energy + Delta-G solvation = -26835.235888 eV Core-core repulsion = 22919.356113 eV Total energy + Delta-G solvation = -3915.879775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20759 -39.59087 -38.03266 -37.46940 -35.12318 -34.33026 -32.72685 -32.40339 -30.01239 -28.49081 -27.66204 -27.08586 -25.90071 -25.62467 -23.18305 -22.92044 -21.25657 -20.49375 -19.02122 -18.33896 -16.95283 -16.58988 -16.16305 -16.02043 -15.91353 -15.75030 -15.38496 -15.06745 -14.80754 -14.54772 -14.46743 -14.11066 -13.86281 -13.34809 -12.95465 -12.65575 -12.43442 -12.31167 -12.12514 -11.90949 -11.84324 -11.56407 -11.51310 -11.20681 -11.04377 -10.94049 -10.63540 -10.34467 -10.25426 -10.19619 -9.82950 -9.45466 -9.31415 -8.63021 -8.19041 -8.00489 -7.54716 -6.24925 -4.33599 2.12543 2.32739 3.01505 3.17342 3.18243 3.26003 3.29964 3.68032 3.84256 4.14063 4.25180 4.50097 4.75559 5.07934 5.22630 5.30307 5.34760 5.37787 5.46549 5.47342 5.58892 5.60544 5.64567 5.65545 5.67893 5.82330 5.84433 5.94460 6.08279 6.31403 6.42153 6.61374 6.79864 7.12225 7.18731 7.41849 7.44922 7.58520 7.65182 7.72071 7.97421 8.03754 8.42779 8.75682 9.07122 9.35370 10.80869 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.004798 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.457023 B = 5833.851376 C = 7700.087301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.045 3.955 4 C 0.140 3.860 5 N -0.597 5.597 6 C 0.240 3.760 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.715 3.285 16 O -0.589 6.589 17 N -0.654 5.654 18 C 0.369 3.631 19 C -0.293 4.293 20 C 0.271 3.729 21 O -0.290 6.290 22 C 0.035 3.965 23 N -0.353 5.353 24 N -0.387 5.387 25 C 0.105 3.895 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.420 0.580 37 H 0.180 0.820 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 7.280 -5.620 9.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.033 4.033 4 C 0.016 3.984 5 N -0.330 5.330 6 C 0.120 3.880 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.417 3.583 16 O -0.468 6.468 17 N -0.306 5.306 18 C 0.146 3.854 19 C -0.325 4.325 20 C 0.067 3.933 21 O -0.194 6.194 22 C -0.061 4.061 23 N -0.193 5.193 24 N -0.180 5.180 25 C -0.036 4.036 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.260 0.740 37 H 0.197 0.803 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.574 7.443 -6.498 10.507 hybrid contribution 0.629 -0.768 0.701 1.215 sum -2.945 6.675 -5.798 9.319 Atomic orbital electron populations 1.22675 0.82154 1.02353 0.99210 1.88042 1.18677 1.27517 1.95227 1.23082 0.95293 0.84927 0.99987 1.21287 0.90931 0.99620 0.86549 1.47314 1.67059 1.09205 1.09433 1.19434 0.97762 0.72884 0.97876 1.21572 0.97241 0.92535 1.46983 0.91984 1.24933 0.97587 0.96305 0.94814 1.69930 1.34381 1.01270 1.47032 0.86532 0.84228 0.78073 0.78878 1.20402 1.21083 1.19825 1.15525 0.78082 0.84866 0.79864 1.90774 1.60850 1.12233 1.82986 1.42198 1.68829 1.10727 1.08818 1.17637 0.96276 0.89881 0.81566 1.20780 1.21645 0.92256 0.97829 1.20288 0.96219 0.84214 0.92544 1.86290 1.83856 1.19257 1.30043 1.22891 0.99955 1.02261 0.80993 1.77333 1.34111 0.91228 1.16635 1.47896 1.57416 1.05919 1.06738 1.21801 1.02875 0.76034 1.02892 0.89924 0.94676 0.94660 0.93020 0.93189 0.89135 0.89053 0.92464 0.95892 0.92466 0.73991 0.80325 0.92785 0.88662 0.92747 0.90737 0.89641 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.42 9.53 -35.23 -0.34 -6.76 16 3 C 0.05 0.70 6.28 37.16 0.23 0.94 16 4 C 0.14 2.45 5.81 -4.04 -0.02 2.43 16 5 N -0.60 -12.10 2.42 -180.80 -0.44 -12.54 16 6 C 0.24 5.45 4.75 -5.19 -0.02 5.43 16 7 C -0.54 -13.53 9.39 -34.44 -0.32 -13.85 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -23.36 13.29 55.43 0.74 -22.63 16 11 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 13 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.72 14.81 8.24 -86.92 -0.72 14.09 16 16 O -0.59 -12.84 13.05 5.29 0.07 -12.77 16 17 N -0.65 -12.58 5.28 -15.73 -0.08 -12.67 16 18 C 0.37 6.97 7.68 -152.68 -1.17 5.80 16 19 C -0.29 -5.76 9.66 -39.64 -0.38 -6.14 16 20 C 0.27 4.94 7.88 -17.14 -0.14 4.81 16 21 O -0.29 -4.68 10.58 -19.70 -0.21 -4.88 16 22 C 0.03 0.40 10.69 101.05 1.08 1.48 16 23 N -0.35 -6.22 11.95 30.53 0.37 -5.85 16 24 N -0.39 -6.55 4.04 -67.04 -0.27 -6.82 16 25 C 0.11 1.34 11.29 59.85 0.68 2.01 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 32 H 0.09 1.52 7.42 -51.93 -0.39 1.13 16 33 H 0.06 1.41 7.12 -51.93 -0.37 1.04 16 34 H 0.02 0.53 6.36 -51.93 -0.33 0.20 16 35 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.42 7.86 5.71 -40.82 -0.23 7.63 16 37 H 0.18 3.73 5.82 -52.49 -0.31 3.43 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.01 7.51 -51.93 -0.39 0.62 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -30.51 364.69 -5.67 -36.18 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.21 Total: 8.21 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 0.23 Total: 20.13 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.31 Total: -60.51 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.48 Total: -24.41 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.51 -5.67 -36.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881248840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.745 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds