Wall clock time and date at job start Fri Apr 10 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00052 * 2 1 4 4 C 1.53003 * 109.47332 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46943 * 65.00456 * 4 3 2 6 6 C 1.46504 * 119.99704 * 269.99999 * 5 4 3 7 7 C 1.50694 * 109.46822 * 269.99831 * 6 5 4 8 8 H 1.07997 * 120.00116 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99715 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00008 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47116 * 89.99928 * 11 9 7 13 13 H 1.48503 * 109.47206 * 210.00083 * 11 9 7 14 14 H 1.48502 * 109.46991 * 329.99963 * 11 9 7 15 15 C 1.34771 * 120.00091 * 89.99578 * 5 4 3 16 16 O 1.21587 * 120.00038 * 0.02562 * 15 5 4 17 17 N 1.34776 * 119.99923 * 180.02562 * 15 5 4 18 18 C 1.39482 * 119.99935 * 180.02562 * 17 15 5 19 19 C 1.36065 * 126.21727 * 0.02624 * 18 17 15 20 20 C 1.40155 * 107.82202 * 180.02562 * 19 18 17 21 21 O 1.35989 * 125.84261 * 179.97438 * 20 19 18 22 22 C 1.42894 * 116.99897 * 179.97438 * 21 20 19 23 23 N 1.31114 * 108.32163 * 359.97438 * 20 19 18 24 24 N 1.35804 * 126.21986 * 180.02562 * 18 17 15 25 25 C 1.46505 * 126.04363 * 0.04127 * 24 18 17 26 26 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47235 * 299.99579 * 1 2 3 28 28 H 1.08995 * 109.47376 * 59.99705 * 1 2 3 29 29 H 1.09004 * 109.46851 * 60.00653 * 3 2 1 30 30 H 1.09001 * 109.47334 * 300.00261 * 3 2 1 31 31 H 1.08995 * 109.47217 * 305.00820 * 4 3 2 32 32 H 1.08996 * 109.46998 * 185.00076 * 4 3 2 33 33 H 1.09002 * 109.46967 * 29.99843 * 6 5 4 34 34 H 1.09002 * 109.46657 * 149.99449 * 6 5 4 35 35 H 0.97002 * 120.00210 * 179.97438 * 10 9 7 36 36 H 0.97001 * 120.00381 * 0.02562 * 17 15 5 37 37 H 1.07998 * 126.09347 * 0.02562 * 19 18 17 38 38 H 1.09002 * 109.47485 * 60.00333 * 22 21 20 39 39 H 1.09006 * 109.46969 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47434 * 299.99290 * 22 21 20 41 41 H 1.09002 * 109.46908 * 269.98164 * 25 24 18 42 42 H 1.09001 * 109.46949 * 29.97741 * 25 24 18 43 43 H 1.08996 * 109.47137 * 149.97430 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2510 6 6 4.1063 -0.8925 -1.3405 7 6 5.5017 -1.2980 -0.9414 8 1 6.2200 -0.5461 -0.6499 9 6 5.8614 -2.6291 -0.9485 10 7 4.9867 -3.5447 -1.3040 11 14 7.5913 -3.1318 -0.4546 12 1 7.6348 -3.3842 1.0082 13 1 7.9741 -4.3686 -1.1819 14 1 8.5403 -2.0422 -0.7973 15 6 4.2632 1.3330 -2.3201 16 8 4.1560 2.5419 -2.2457 17 7 4.6686 0.7620 -3.4716 18 6 4.9657 1.5579 -4.5779 19 6 4.8912 2.9153 -4.6350 20 6 5.2729 3.3121 -5.9238 21 8 5.3293 4.5923 -6.3790 22 6 5.7464 4.7818 -7.7325 23 7 5.5663 2.2378 -6.6158 24 7 5.3820 1.1189 -5.7937 25 6 5.5986 -0.2782 -6.1779 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8464 -0.8900 31 1 3.8507 0.5685 0.8426 32 1 3.9784 2.1765 0.0902 33 1 3.3858 -1.3631 -0.6715 34 1 3.9137 -1.2121 -2.3646 35 1 5.2399 -4.4811 -1.3093 36 1 4.7538 -0.2024 -3.5311 37 1 4.5912 3.5704 -3.8304 38 1 5.0586 4.2636 -8.4006 39 1 5.7471 5.8464 -7.9668 40 1 6.7513 4.3803 -7.8626 41 1 6.6297 -0.5585 -5.9627 42 1 4.9223 -0.9195 -5.6127 43 1 5.4048 -0.3960 -7.2440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881248840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:17 Heat of formation + Delta-G solvation = -31.689561 kcal Electronic energy + Delta-G solvation = -26836.157640 eV Core-core repulsion = 22919.356113 eV Total energy + Delta-G solvation = -3916.801527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.62820 -41.12902 -39.26642 -38.73168 -36.76490 -35.85750 -34.59364 -33.66196 -31.43277 -29.98263 -28.87372 -28.60868 -27.07897 -26.76604 -24.97449 -24.36672 -22.66267 -21.83643 -20.57799 -19.74634 -18.69916 -18.25540 -17.54774 -17.33003 -17.17330 -17.03942 -16.72523 -16.54603 -16.29129 -15.95388 -15.75226 -15.40070 -15.21748 -14.86624 -14.39532 -14.28074 -13.66481 -13.64689 -13.44392 -13.34120 -13.11252 -12.80702 -12.77271 -12.73004 -12.61634 -12.44658 -12.15372 -11.90904 -11.77272 -11.68665 -11.56219 -11.05671 -10.60838 -10.51683 -9.66392 -9.46541 -9.08498 -8.18485 -6.33777 0.68675 0.96114 1.42024 1.45780 1.53608 1.66732 1.71428 2.24277 2.38077 2.45554 2.94042 2.98465 3.11839 3.53703 4.19087 4.21243 4.31471 4.37882 4.40080 4.41198 4.42437 4.50331 4.54885 4.56438 4.59167 4.63285 4.66920 4.75709 4.83625 4.87388 4.96673 5.00913 5.27356 5.33038 5.56581 5.74091 5.90780 6.04580 6.07202 6.29871 6.34639 6.61035 6.71049 6.91943 7.36442 7.47343 8.86029 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.004798 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.457023 B = 5833.851376 C = 7700.087301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.053 3.947 4 C 0.133 3.867 5 N -0.598 5.598 6 C 0.259 3.741 7 C -0.551 4.551 8 H 0.051 0.949 9 C 0.030 3.970 10 N -0.913 5.913 11 Si 0.952 3.048 12 H -0.277 1.277 13 H -0.279 1.279 14 H -0.275 1.275 15 C 0.711 3.289 16 O -0.602 6.602 17 N -0.650 5.650 18 C 0.358 3.642 19 C -0.314 4.314 20 C 0.268 3.732 21 O -0.303 6.303 22 C 0.028 3.972 23 N -0.350 5.350 24 N -0.382 5.382 25 C 0.095 3.905 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.037 0.963 34 H 0.018 0.982 35 H 0.268 0.732 36 H 0.421 0.579 37 H 0.162 0.838 38 H 0.057 0.943 39 H 0.130 0.870 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 7.345 -6.156 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.025 4.025 4 C 0.010 3.990 5 N -0.331 5.331 6 C 0.138 3.862 7 C -0.589 4.589 8 H 0.070 0.930 9 C -0.172 4.172 10 N -0.552 5.552 11 Si 0.778 3.222 12 H -0.203 1.203 13 H -0.205 1.205 14 H -0.200 1.200 15 C 0.412 3.588 16 O -0.483 6.483 17 N -0.302 5.302 18 C 0.135 3.865 19 C -0.347 4.347 20 C 0.064 3.936 21 O -0.207 6.207 22 C -0.066 4.066 23 N -0.190 5.190 24 N -0.174 5.174 25 C -0.044 4.044 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.262 0.738 37 H 0.179 0.821 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.248 7.514 -7.052 10.805 hybrid contribution 0.501 -0.751 0.819 1.219 sum -2.747 6.764 -6.232 9.599 Atomic orbital electron populations 1.22856 0.80128 1.03276 1.00545 1.87990 1.21014 1.28318 1.95487 1.22989 0.93687 0.84747 1.01030 1.21491 0.92658 0.99593 0.85220 1.47317 1.67160 1.08304 1.10310 1.19034 0.96166 0.74117 0.96846 1.21702 0.97868 0.92499 1.46879 0.93035 1.25539 1.00564 0.96303 0.94762 1.70007 1.35836 1.01561 1.47761 0.85650 0.80411 0.77658 0.78465 1.20281 1.20473 1.20025 1.15645 0.78161 0.84786 0.80214 1.90768 1.61507 1.12690 1.83292 1.42074 1.68661 1.10722 1.08693 1.17646 0.96799 0.89869 0.82173 1.20720 1.22878 0.92675 0.98400 1.20318 0.96057 0.85126 0.92101 1.86279 1.83892 1.18083 1.32463 1.23221 0.99961 1.04642 0.78787 1.77300 1.33882 0.91282 1.16579 1.48235 1.56283 1.07089 1.05833 1.22164 1.03798 0.73894 1.04584 0.89311 0.92379 0.94201 0.89738 0.94170 0.89436 0.88361 0.94496 0.96396 0.92259 0.73833 0.82069 0.92390 0.85233 0.92548 0.89641 0.88927 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -13.77 9.53 -148.98 -1.42 -15.19 16 3 C 0.05 1.61 6.28 71.98 0.45 2.06 16 4 C 0.13 4.66 5.81 86.38 0.50 5.16 16 5 N -0.60 -24.49 2.42 -844.19 -2.04 -26.54 16 6 C 0.26 11.90 4.75 85.63 0.41 12.31 16 7 C -0.55 -27.42 9.39 25.60 0.24 -27.18 16 8 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 9 C 0.03 1.48 5.46 84.66 0.46 1.94 16 10 N -0.91 -47.78 13.29 21.45 0.28 -47.49 16 11 Si 0.95 40.41 29.54 68.60 2.03 42.44 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 15 C 0.71 29.81 8.24 179.06 1.48 31.28 16 16 O -0.60 -26.66 13.05 -3.99 -0.05 -26.72 16 17 N -0.65 -25.21 5.28 -321.95 -1.70 -26.91 16 18 C 0.36 13.57 7.68 131.13 1.01 14.57 16 19 C -0.31 -12.52 9.66 22.23 0.21 -12.30 16 20 C 0.27 9.67 7.88 85.27 0.67 10.34 16 21 O -0.30 -9.52 10.58 -93.42 -0.99 -10.51 16 22 C 0.03 0.60 10.69 113.37 1.21 1.81 16 23 N -0.35 -11.95 11.95 -170.57 -2.04 -13.99 16 24 N -0.38 -12.58 4.04 -366.02 -1.48 -14.06 16 25 C 0.10 2.26 11.29 127.77 1.44 3.70 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 3.07 8.07 -2.39 -0.02 3.05 16 32 H 0.10 3.25 7.42 -2.39 -0.02 3.24 16 33 H 0.04 1.86 7.12 -2.39 -0.02 1.84 16 34 H 0.02 0.85 6.36 -2.39 -0.02 0.83 16 35 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 36 H 0.42 15.86 5.71 -92.71 -0.53 15.33 16 37 H 0.16 6.96 5.82 -2.91 -0.02 6.94 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 2.07 7.51 -2.39 -0.02 2.06 16 43 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -64.63 364.69 2.43 -62.20 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.50 Total: 31.11 kcal Atomic # 6 Polarization: 36.31 SS G_CDS: 9.34 Total: 45.65 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -6.98 Total: -128.98 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -2.46 Total: -52.41 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -64.63 2.43 -62.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881248840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.514 kcal (2) G-P(sol) polarization free energy of solvation -64.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds