Wall clock time and date at job start Fri Apr 10 2020 18:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00168 * 2 1 4 4 C 1.53005 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47061 * 67.71772 * 4 3 2 6 6 C 1.46897 * 110.99850 * 158.28747 * 5 4 3 7 7 C 1.50699 * 109.47387 * 287.99157 * 6 5 4 8 8 H 1.08005 * 119.99610 * 2.88204 * 7 6 5 9 9 C 1.37875 * 120.00101 * 182.88948 * 7 6 5 10 10 N 1.31510 * 120.00294 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99867 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47232 * 89.99533 * 11 9 7 13 13 H 1.48491 * 109.47087 * 209.99804 * 11 9 7 14 14 H 1.48497 * 109.47170 * 329.99873 * 11 9 7 15 15 C 1.46898 * 110.99672 * 282.23833 * 5 4 3 16 16 C 1.50702 * 109.46949 * 167.38850 * 15 5 4 17 17 C 1.35352 * 126.75208 * 95.24461 * 16 15 5 18 18 N 1.35313 * 106.17561 * 180.12697 * 17 16 15 19 19 C 1.46501 * 125.86539 * 179.90601 * 18 17 16 20 20 C 1.50699 * 109.46694 * 124.71539 * 19 18 17 21 21 O 1.20825 * 120.00590 * 359.97438 * 20 19 18 22 22 O 1.34237 * 119.99816 * 179.97438 * 20 19 18 23 23 C 1.45202 * 116.99969 * 180.02562 * 22 20 19 24 24 N 1.28714 * 108.26331 * 359.64140 * 18 17 16 25 25 N 1.28635 * 110.17980 * 0.22936 * 24 18 17 26 26 H 1.09002 * 109.47348 * 300.00510 * 1 2 3 27 27 H 1.09003 * 109.46955 * 60.00407 * 1 2 3 28 28 H 1.09000 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47465 * 59.99861 * 3 2 1 30 30 H 1.09001 * 109.46902 * 299.99781 * 3 2 1 31 31 H 1.08994 * 109.46955 * 307.71505 * 4 3 2 32 32 H 1.09002 * 109.46698 * 187.71265 * 4 3 2 33 33 H 1.08998 * 109.47324 * 47.98732 * 6 5 4 34 34 H 1.08997 * 109.47308 * 167.98769 * 6 5 4 35 35 H 0.96994 * 120.00187 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46911 * 47.39284 * 15 5 4 37 37 H 1.08993 * 109.47191 * 287.38812 * 15 5 4 38 38 H 1.07997 * 126.90850 * 0.02562 * 17 16 15 39 39 H 1.08999 * 109.47261 * 4.72063 * 19 18 17 40 40 H 1.08997 * 109.47159 * 244.71572 * 19 18 17 41 41 H 1.08993 * 109.47378 * 59.99824 * 23 22 20 42 42 H 1.08994 * 109.46753 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.46551 * 299.99533 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9827 0.6222 -1.2807 6 6 5.3901 0.9543 -1.5388 7 6 5.5069 2.4181 -1.8772 8 1 4.6310 3.0495 -1.8530 9 6 6.7319 2.9513 -2.2179 10 7 7.7986 2.1826 -2.2470 11 14 6.8766 4.7657 -2.6381 12 1 7.1621 5.5387 -1.4028 13 1 7.9809 4.9619 -3.6112 14 1 5.6015 5.2389 -3.2344 15 6 3.7686 -0.8306 -1.3212 16 6 3.9419 -1.3246 -2.7343 17 6 5.0676 -1.8428 -3.2788 18 7 4.7613 -2.1447 -4.5617 19 6 5.6736 -2.7308 -5.5469 20 6 5.0656 -3.9907 -6.1072 21 8 3.9818 -4.3613 -5.7228 22 8 5.7282 -4.7012 -7.0335 23 6 5.0820 -5.9035 -7.5288 24 7 3.5292 -1.8336 -4.7662 25 7 3.0121 -1.3419 -3.6959 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8476 0.5294 0.8138 32 1 3.9780 2.1711 0.1386 33 1 5.9833 0.7385 -0.6501 34 1 5.7569 0.3578 -2.3741 35 1 8.6604 2.5578 -2.4863 36 1 2.7597 -1.0588 -0.9777 37 1 4.4933 -1.3228 -0.6727 38 1 6.0192 -1.9849 -2.7883 39 1 6.6231 -2.9679 -5.0669 40 1 5.8426 -2.0185 -6.3544 41 1 4.1289 -5.6409 -7.9877 42 1 5.7229 -6.3814 -8.2696 43 1 4.9095 -6.5907 -6.7006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884004158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:20 Heat of formation + Delta-G solvation = -8.722763 kcal Electronic energy + Delta-G solvation = -26335.551296 eV Core-core repulsion = 22419.745685 eV Total energy + Delta-G solvation = -3915.805611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.84123 -40.64465 -37.92120 -36.88950 -36.12585 -34.39568 -32.57532 -31.28741 -29.68229 -29.11841 -27.55735 -27.08389 -26.05206 -24.38224 -22.71919 -22.23858 -21.34860 -20.77595 -19.69510 -18.12897 -17.44164 -16.86312 -16.51075 -16.39648 -16.05626 -15.54991 -15.51389 -14.87337 -14.59144 -14.37750 -14.17260 -13.92495 -13.65826 -13.57254 -13.21027 -12.72738 -12.42746 -12.19340 -12.08224 -11.74513 -11.41815 -11.29836 -11.15825 -11.12745 -10.92070 -10.89810 -10.67655 -10.62596 -10.40507 -10.19444 -9.82707 -9.68423 -9.18732 -9.13236 -8.62141 -8.40914 -7.16624 -6.02954 -4.02380 1.72192 1.82905 2.17831 2.78374 3.11763 3.31069 3.37552 3.43273 4.22021 4.27255 4.42012 4.43986 4.76539 4.79586 4.87244 4.88768 5.07579 5.20394 5.33474 5.42134 5.48871 5.61163 5.64746 5.82813 5.85147 5.89149 5.90615 5.96870 6.02615 6.27815 6.42112 6.52302 6.64645 6.81571 6.85533 7.29537 7.33977 7.38324 7.57693 7.84215 8.13166 8.27023 8.58757 9.01818 9.05365 9.61424 11.07757 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.004306 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.739227 B = 6500.266411 C = 8889.948184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.066 3.934 4 C 0.066 3.934 5 N -0.527 5.527 6 C 0.188 3.812 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.901 5.901 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.130 3.870 16 C 0.017 3.983 17 C -0.038 4.038 18 N -0.299 5.299 19 C 0.133 3.867 20 C 0.449 3.551 21 O -0.474 6.474 22 O -0.357 6.357 23 C 0.038 3.962 24 N -0.077 5.077 25 N -0.245 5.245 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.098 0.902 33 H -0.011 1.011 34 H 0.035 0.965 35 H 0.259 0.741 36 H 0.108 0.892 37 H 0.036 0.964 38 H 0.189 0.811 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -12.822 -3.749 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C -0.010 4.010 4 C -0.062 4.062 5 N -0.252 5.252 6 C 0.063 3.937 7 C -0.539 4.539 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.541 5.541 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.198 1.198 15 C 0.001 3.999 16 C -0.120 4.120 17 C -0.187 4.187 18 N -0.094 5.094 19 C 0.009 3.991 20 C 0.288 3.712 21 O -0.358 6.358 22 O -0.273 6.273 23 C -0.056 4.056 24 N -0.056 5.056 25 N -0.113 5.113 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.007 0.993 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.054 0.946 38 H 0.206 0.794 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.139 -12.892 -5.094 14.784 hybrid contribution 1.529 0.674 0.865 1.882 sum -3.610 -12.219 -4.228 13.424 Atomic orbital electron populations 1.22639 0.82299 1.01985 0.99396 1.87853 1.18729 1.28774 1.95162 1.22746 0.94607 0.84125 0.99561 1.22034 0.92023 1.01366 0.90774 1.61980 1.24640 1.08179 1.30406 1.19817 0.81216 0.97005 0.95648 1.21189 0.93759 0.93914 1.45075 0.91982 1.24940 0.95798 0.97948 0.95808 1.69938 0.99244 1.35348 1.49600 0.86557 0.77714 0.85368 0.78160 1.20753 1.21373 1.19819 1.20528 1.02845 0.89576 0.86981 1.21885 0.89700 1.02076 0.98325 1.23404 1.02801 1.07813 0.84726 1.46595 1.10249 1.42969 1.09587 1.21186 0.92066 0.92023 0.93825 1.23430 0.84422 0.85401 0.77959 1.90802 1.20190 1.67984 1.56822 1.86462 1.49485 1.37858 1.53503 1.23315 0.98930 0.83762 0.99573 1.78320 0.91016 1.15238 1.21036 1.75019 1.26073 1.14098 0.96154 0.94922 0.94211 0.90370 0.94064 0.92379 0.95131 0.88377 0.99307 0.94691 0.93101 0.87427 0.94640 0.79406 0.83498 0.84153 0.91572 0.87743 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.39 -6.41 7.90 -35.23 -0.28 -6.68 16 3 C 0.07 1.10 6.25 37.16 0.23 1.34 16 4 C 0.07 1.27 5.36 -3.82 -0.02 1.25 16 5 N -0.53 -11.55 4.34 -237.52 -1.03 -12.58 16 6 C 0.19 4.74 4.57 -4.98 -0.02 4.72 16 7 C -0.50 -13.81 8.37 -34.44 -0.29 -14.09 16 8 H 0.06 1.72 7.64 -52.48 -0.40 1.32 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -25.77 13.29 55.43 0.74 -25.04 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.13 2.56 5.33 -4.98 -0.03 2.54 16 16 C 0.02 0.35 6.10 -82.77 -0.51 -0.16 16 17 C -0.04 -0.67 10.20 -17.05 -0.17 -0.84 16 18 N -0.30 -4.95 3.20 -62.44 -0.20 -5.15 16 19 C 0.13 1.44 7.05 -5.19 -0.04 1.41 16 20 C 0.45 5.40 7.97 36.01 0.29 5.69 16 21 O -0.47 -7.63 15.43 -18.75 -0.29 -7.92 16 22 O -0.36 -3.45 10.57 -39.28 -0.41 -3.86 16 23 C 0.04 0.27 10.56 101.05 1.07 1.34 16 24 N -0.08 -1.55 12.13 60.35 0.73 -0.82 16 25 N -0.25 -5.34 12.41 33.29 0.41 -4.92 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.56 7.97 -51.93 -0.41 0.14 16 32 H 0.10 1.97 7.00 -51.93 -0.36 1.61 16 33 H -0.01 -0.29 8.05 -51.93 -0.42 -0.70 16 34 H 0.04 0.92 6.02 -51.93 -0.31 0.61 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.11 2.10 5.15 -51.93 -0.27 1.83 16 37 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.19 2.72 8.06 -52.49 -0.42 2.30 16 39 H 0.15 1.03 8.07 -51.93 -0.42 0.61 16 40 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -36.09 365.96 -4.69 -40.78 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.38 Total: -1.91 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 1.53 Total: 6.18 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.65 Total: -48.50 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.98 Total: -18.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.09 -4.69 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884004158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.056 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds