Wall clock time and date at job start Fri Apr 10 2020 18:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00168 * 2 1 4 4 C 1.53005 * 109.47119 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47061 * 67.71772 * 4 3 2 6 6 C 1.46897 * 110.99850 * 158.28747 * 5 4 3 7 7 C 1.50699 * 109.47387 * 287.99157 * 6 5 4 8 8 H 1.08005 * 119.99610 * 2.88204 * 7 6 5 9 9 C 1.37875 * 120.00101 * 182.88948 * 7 6 5 10 10 N 1.31510 * 120.00294 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99867 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47232 * 89.99533 * 11 9 7 13 13 H 1.48491 * 109.47087 * 209.99804 * 11 9 7 14 14 H 1.48497 * 109.47170 * 329.99873 * 11 9 7 15 15 C 1.46898 * 110.99672 * 282.23833 * 5 4 3 16 16 C 1.50702 * 109.46949 * 167.38850 * 15 5 4 17 17 C 1.35352 * 126.75208 * 95.24461 * 16 15 5 18 18 N 1.35313 * 106.17561 * 180.12697 * 17 16 15 19 19 C 1.46501 * 125.86539 * 179.90601 * 18 17 16 20 20 C 1.50699 * 109.46694 * 124.71539 * 19 18 17 21 21 O 1.20825 * 120.00590 * 359.97438 * 20 19 18 22 22 O 1.34237 * 119.99816 * 179.97438 * 20 19 18 23 23 C 1.45202 * 116.99969 * 180.02562 * 22 20 19 24 24 N 1.28714 * 108.26331 * 359.64140 * 18 17 16 25 25 N 1.28635 * 110.17980 * 0.22936 * 24 18 17 26 26 H 1.09002 * 109.47348 * 300.00510 * 1 2 3 27 27 H 1.09003 * 109.46955 * 60.00407 * 1 2 3 28 28 H 1.09000 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47465 * 59.99861 * 3 2 1 30 30 H 1.09001 * 109.46902 * 299.99781 * 3 2 1 31 31 H 1.08994 * 109.46955 * 307.71505 * 4 3 2 32 32 H 1.09002 * 109.46698 * 187.71265 * 4 3 2 33 33 H 1.08998 * 109.47324 * 47.98732 * 6 5 4 34 34 H 1.08997 * 109.47308 * 167.98769 * 6 5 4 35 35 H 0.96994 * 120.00187 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46911 * 47.39284 * 15 5 4 37 37 H 1.08993 * 109.47191 * 287.38812 * 15 5 4 38 38 H 1.07997 * 126.90850 * 0.02562 * 17 16 15 39 39 H 1.08999 * 109.47261 * 4.72063 * 19 18 17 40 40 H 1.08997 * 109.47159 * 244.71572 * 19 18 17 41 41 H 1.08993 * 109.47378 * 59.99824 * 23 22 20 42 42 H 1.08994 * 109.46753 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.46551 * 299.99533 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9827 0.6222 -1.2807 6 6 5.3901 0.9543 -1.5388 7 6 5.5069 2.4181 -1.8772 8 1 4.6310 3.0495 -1.8530 9 6 6.7319 2.9513 -2.2179 10 7 7.7986 2.1826 -2.2470 11 14 6.8766 4.7657 -2.6381 12 1 7.1621 5.5387 -1.4028 13 1 7.9809 4.9619 -3.6112 14 1 5.6015 5.2389 -3.2344 15 6 3.7686 -0.8306 -1.3212 16 6 3.9419 -1.3246 -2.7343 17 6 5.0676 -1.8428 -3.2788 18 7 4.7613 -2.1447 -4.5617 19 6 5.6736 -2.7308 -5.5469 20 6 5.0656 -3.9907 -6.1072 21 8 3.9818 -4.3613 -5.7228 22 8 5.7282 -4.7012 -7.0335 23 6 5.0820 -5.9035 -7.5288 24 7 3.5292 -1.8336 -4.7662 25 7 3.0121 -1.3419 -3.6959 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8476 0.5294 0.8138 32 1 3.9780 2.1711 0.1386 33 1 5.9833 0.7385 -0.6501 34 1 5.7569 0.3578 -2.3741 35 1 8.6604 2.5578 -2.4863 36 1 2.7597 -1.0588 -0.9777 37 1 4.4933 -1.3228 -0.6727 38 1 6.0192 -1.9849 -2.7883 39 1 6.6231 -2.9679 -5.0669 40 1 5.8426 -2.0185 -6.3544 41 1 4.1289 -5.6409 -7.9877 42 1 5.7229 -6.3814 -8.2696 43 1 4.9095 -6.5907 -6.7006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884004158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:20 Heat of formation + Delta-G solvation = -35.483000 kcal Electronic energy + Delta-G solvation = -26336.711707 eV Core-core repulsion = 22419.745685 eV Total energy + Delta-G solvation = -3916.966022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.22893 -41.58107 -39.33102 -37.84625 -37.59314 -35.67357 -34.61542 -32.74109 -30.74873 -30.64323 -29.09495 -28.08998 -27.24486 -26.03585 -24.19718 -23.66057 -22.75464 -22.05031 -21.18345 -19.07950 -18.59063 -18.48977 -17.80467 -17.49017 -17.31811 -16.98261 -16.78504 -16.44131 -16.12515 -15.78565 -15.40003 -15.27246 -14.90533 -14.67616 -14.54259 -14.05477 -13.72422 -13.52777 -13.30759 -13.06927 -13.03921 -12.74671 -12.70619 -12.56268 -12.46825 -12.20378 -12.00217 -11.98368 -11.91925 -11.77994 -11.48075 -11.24712 -10.99331 -10.53513 -10.39183 -10.06753 -8.88539 -8.13273 -6.19870 0.52342 0.90677 1.05325 1.42672 1.43848 1.54417 1.60507 1.79258 2.44879 3.00200 3.19175 3.30557 3.50898 3.57774 3.68093 3.99436 4.04717 4.22226 4.25915 4.28934 4.32232 4.42742 4.50967 4.54980 4.64810 4.67682 4.69050 4.81871 4.90485 4.92726 4.99800 5.13415 5.14469 5.30244 5.33360 5.44553 5.56987 5.73825 6.16443 6.35886 6.48231 6.51627 6.72037 6.94548 7.47978 7.56446 8.96638 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.004306 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.739227 B = 6500.266411 C = 8889.948184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.076 3.924 4 C 0.065 3.935 5 N -0.540 5.540 6 C 0.206 3.794 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.956 3.044 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.275 1.275 15 C 0.137 3.863 16 C -0.011 4.011 17 C -0.029 4.029 18 N -0.289 5.289 19 C 0.121 3.879 20 C 0.456 3.544 21 O -0.522 6.522 22 O -0.349 6.349 23 C 0.030 3.970 24 N -0.100 5.100 25 N -0.284 5.284 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.083 0.917 33 H -0.031 1.031 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.217 0.783 39 H 0.192 0.808 40 H 0.166 0.834 41 H 0.059 0.941 42 H 0.140 0.860 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 -12.902 -4.030 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.325 6.325 3 C 0.000 4.000 4 C -0.063 4.063 5 N -0.265 5.265 6 C 0.080 3.920 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.567 5.567 11 Si 0.781 3.219 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.008 3.992 16 C -0.149 4.149 17 C -0.180 4.180 18 N -0.084 5.084 19 C 0.000 4.000 20 C 0.298 3.702 21 O -0.409 6.409 22 O -0.264 6.264 23 C -0.063 4.063 24 N -0.079 5.079 25 N -0.151 5.151 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.102 0.898 33 H -0.014 1.014 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.234 0.766 39 H 0.209 0.791 40 H 0.183 0.817 41 H 0.078 0.922 42 H 0.158 0.842 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.316 -12.989 -5.405 14.716 hybrid contribution 1.298 0.584 0.895 1.681 sum -3.018 -12.404 -4.511 13.540 Atomic orbital electron populations 1.22825 0.80320 1.03243 1.00313 1.87798 1.20854 1.28569 1.95327 1.22563 0.92772 0.84471 1.00237 1.22051 0.93889 1.00492 0.89853 1.61928 1.22414 1.09917 1.32197 1.19472 0.82881 0.95638 0.94027 1.21447 0.93704 0.95173 1.45408 0.92873 1.25670 0.95469 1.01989 0.95598 1.70025 0.99638 1.36995 1.50028 0.85592 0.77529 0.80543 0.78200 1.19749 1.20782 1.19950 1.20474 1.03142 0.88217 0.87384 1.22096 0.90682 1.03589 0.98553 1.23797 1.03014 1.06214 0.84943 1.46927 1.09780 1.41505 1.10183 1.21824 0.92231 0.91958 0.94036 1.23584 0.83618 0.85432 0.77551 1.90797 1.22260 1.69307 1.58580 1.86465 1.49067 1.38397 1.52469 1.23617 0.99605 0.82821 1.00218 1.78200 0.92724 1.16126 1.20846 1.74947 1.27591 1.15559 0.97017 0.92637 0.94578 0.89043 0.91016 0.93957 0.94292 0.89841 1.01364 0.96070 0.92816 0.87371 0.93554 0.76605 0.79094 0.81663 0.92212 0.84188 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -13.14 7.90 -148.98 -1.18 -14.32 16 3 C 0.08 2.49 6.25 71.98 0.45 2.94 16 4 C 0.07 2.50 5.36 86.30 0.46 2.96 16 5 N -0.54 -23.94 4.34 -905.39 -3.93 -27.86 16 6 C 0.21 10.51 4.57 85.56 0.39 10.90 16 7 C -0.52 -28.87 8.37 25.60 0.21 -28.66 16 8 H 0.05 2.98 7.64 -2.91 -0.02 2.96 16 9 C 0.01 0.61 5.46 84.65 0.46 1.07 16 10 N -0.93 -52.68 13.29 21.45 0.28 -52.39 16 11 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 15 C 0.14 5.43 5.33 85.56 0.46 5.89 16 16 C -0.01 -0.46 6.10 41.60 0.25 -0.20 16 17 C -0.03 -1.00 10.20 83.49 0.85 -0.15 16 18 N -0.29 -9.30 3.20 -351.47 -1.12 -10.43 16 19 C 0.12 2.36 7.05 85.63 0.60 2.96 16 20 C 0.46 10.41 7.97 71.24 0.57 10.98 16 21 O -0.52 -16.79 15.43 21.97 0.34 -16.45 16 22 O -0.35 -6.04 10.57 -51.48 -0.54 -6.59 16 23 C 0.03 0.39 10.56 113.37 1.20 1.59 16 24 N -0.10 -4.06 12.13 37.02 0.45 -3.61 16 25 N -0.28 -12.60 12.41 -48.60 -0.60 -13.21 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 1.41 7.97 -2.39 -0.02 1.39 16 32 H 0.08 3.41 7.00 -2.39 -0.02 3.39 16 33 H -0.03 -1.69 8.05 -2.39 -0.02 -1.71 16 34 H 0.02 1.13 6.02 -2.39 -0.01 1.12 16 35 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.11 4.26 5.15 -2.39 -0.01 4.25 16 37 H 0.05 1.70 8.09 -2.39 -0.02 1.68 16 38 H 0.22 5.88 8.06 -2.91 -0.02 5.85 16 39 H 0.19 1.99 8.07 -2.39 -0.02 1.97 16 40 H 0.17 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 42 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 Total: -1.00 -79.30 365.96 3.89 -75.41 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.01 Total: 11.52 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 7.16 Total: 12.25 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.92 Total: -107.50 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.38 Total: -37.36 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -79.30 3.89 -75.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884004158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.925 kcal (2) G-P(sol) polarization free energy of solvation -79.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds