Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47209 * 270.00382 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00322 * 3 2 1 6 6 H 1.48499 * 109.47211 * 150.00422 * 3 2 1 7 7 C 1.37874 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00299 * 173.55228 * 7 2 1 9 9 C 1.50701 * 119.99795 * 353.55422 * 7 2 1 10 10 C 1.52989 * 115.55117 * 85.40269 * 9 7 2 11 11 N 1.46510 * 109.47181 * 65.14383 * 10 9 7 12 12 C 1.34775 * 119.99908 * 178.28698 * 11 10 9 13 13 O 1.21589 * 120.00408 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99987 * 180.27551 * 12 11 10 15 15 C 1.46493 * 120.00122 * 179.72514 * 14 12 11 16 16 H 1.08996 * 109.47440 * 324.99495 * 15 14 12 17 17 C 1.53007 * 109.47300 * 84.99837 * 15 14 12 18 18 O 1.42901 * 109.46904 * 64.99793 * 17 15 14 19 19 C 1.53005 * 109.46948 * 204.99613 * 15 14 12 20 20 C 1.52994 * 109.46859 * 65.00241 * 19 15 14 21 21 H 1.09004 * 109.82742 * 305.56623 * 20 19 15 22 22 C 1.54381 * 109.83013 * 184.58747 * 20 19 15 23 23 C 1.55309 * 102.25319 * 219.12873 * 22 20 19 24 24 C 1.54939 * 100.94178 * 34.13305 * 23 22 20 25 25 O 1.43236 * 109.83470 * 66.45428 * 20 19 15 26 26 C 1.53002 * 117.49433 * 231.07695 * 9 7 2 27 27 C 1.53001 * 117.49717 * 299.73020 * 9 7 2 28 28 H 0.97000 * 120.00393 * 5.06321 * 1 2 3 29 29 H 1.08996 * 109.47917 * 305.14041 * 10 9 7 30 30 H 1.09005 * 109.47267 * 185.13588 * 10 9 7 31 31 H 0.96998 * 119.99783 * 358.28233 * 11 10 9 32 32 H 0.96998 * 119.99645 * 359.71986 * 14 12 11 33 33 H 1.08990 * 109.46874 * 184.99731 * 17 15 14 34 34 H 1.08994 * 109.46888 * 305.00294 * 17 15 14 35 35 H 0.96702 * 113.99988 * 180.02562 * 18 17 15 36 36 H 1.09002 * 109.46570 * 184.99899 * 19 15 14 37 37 H 1.09000 * 109.47265 * 305.00016 * 19 15 14 38 38 H 1.08998 * 110.85068 * 337.31823 * 22 20 19 39 39 H 1.08995 * 110.85137 * 100.93993 * 22 20 19 40 40 H 1.09001 * 111.12485 * 276.20944 * 23 22 20 41 41 H 1.08999 * 111.16304 * 152.06487 * 23 22 20 42 42 H 1.09006 * 110.31068 * 204.64184 * 24 23 22 43 43 H 1.09003 * 110.39771 * 82.51521 * 24 23 22 44 44 H 1.08999 * 117.49575 * 215.00081 * 26 9 7 45 45 H 1.08994 * 117.50150 * 0.02562 * 26 9 7 46 46 H 1.09006 * 117.49625 * 359.97438 * 27 9 7 47 47 H 1.08997 * 117.49753 * 144.97457 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1056 9 6 1.2582 -2.4951 0.1454 10 6 0.7021 -3.0859 -1.1516 11 7 1.8112 -3.4583 -2.0335 12 6 1.5599 -4.0344 -3.2257 13 8 0.4129 -4.2456 -3.5692 14 7 2.5804 -4.3821 -4.0346 15 6 2.3075 -5.0138 -5.3279 16 1 1.4346 -5.6605 -5.2394 17 6 2.0373 -3.9330 -6.3766 18 8 3.2207 -3.1573 -6.5770 19 6 3.5181 -5.8467 -5.7541 20 6 3.7127 -7.0033 -4.7717 21 1 3.7816 -6.6170 -3.7547 22 6 4.9981 -7.7813 -5.1266 23 6 4.5718 -9.2537 -4.8767 24 6 3.0820 -9.2043 -5.2994 25 8 2.6131 -7.9158 -4.8713 26 6 1.7472 -3.4737 1.2150 27 6 0.4419 -2.7017 1.4228 28 1 -0.4851 0.8367 -0.0741 29 1 0.0754 -2.3456 -1.6488 30 1 0.1076 -3.9703 -0.9225 31 1 2.7263 -3.2900 -1.7594 32 1 3.4955 -4.2138 -3.7605 33 1 1.7476 -4.4030 -7.3163 34 1 1.2322 -3.2846 -6.0311 35 1 3.1222 -2.4512 -7.2303 36 1 3.3511 -6.2445 -6.7552 37 1 4.4088 -5.2184 -5.7567 38 1 5.2685 -7.6278 -6.1713 39 1 5.8179 -7.4976 -4.4668 40 1 4.6730 -9.5187 -3.8243 41 1 5.1367 -9.9395 -5.5080 42 1 2.5211 -9.9956 -4.8019 43 1 2.9908 -9.2998 -6.3814 44 1 1.6727 -4.5386 0.9946 45 1 2.6083 -3.1764 1.8133 46 1 0.4451 -1.8968 2.1579 47 1 -0.4915 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884314129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -111.933056 kcal Electronic energy + Delta-G solvation = -26888.235236 eV Core-core repulsion = 23071.494434 eV Total energy + Delta-G solvation = -3816.740802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99754 -39.16750 -37.29538 -36.51327 -34.62868 -33.14699 -32.36731 -31.93531 -31.36587 -28.89471 -26.04557 -25.70830 -24.97355 -22.33655 -21.47969 -21.17557 -20.68091 -20.03888 -19.31624 -17.88002 -17.19919 -16.93700 -16.34150 -16.18563 -15.66432 -14.97650 -14.63818 -14.59627 -14.20119 -14.07546 -13.83972 -13.70970 -13.52061 -13.36502 -13.02110 -12.59847 -12.18496 -12.03514 -11.93422 -11.74168 -11.59855 -11.49486 -11.16983 -11.07194 -10.97077 -10.88936 -10.70821 -10.49522 -10.22303 -9.96604 -9.65011 -9.62422 -9.42255 -8.91101 -8.68703 -8.45096 -8.19377 -7.87282 -6.03491 -4.11735 3.28218 3.32708 3.35812 3.37790 3.67597 3.90758 4.25809 4.37767 4.38528 4.42633 4.62968 4.86575 4.92065 4.96076 5.10118 5.18876 5.24747 5.33478 5.39963 5.42970 5.44216 5.49005 5.55208 5.59948 5.66638 5.79040 5.93920 6.04641 6.08782 6.19068 6.40184 6.53451 6.67137 6.74902 6.89189 6.93621 6.98153 7.13919 7.42542 7.49550 7.53921 7.62980 7.72005 7.85520 8.39181 8.78945 8.88984 9.33946 9.54581 11.04324 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.003365 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.501197 B = 8319.808001 C = 9117.911657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.721 5.721 12 C 0.699 3.301 13 O -0.606 6.606 14 N -0.741 5.741 15 C 0.174 3.826 16 H 0.105 0.895 17 C 0.061 3.939 18 O -0.570 6.570 19 C -0.129 4.129 20 C 0.079 3.921 21 H 0.084 0.916 22 C -0.151 4.151 23 C -0.157 4.157 24 C 0.049 3.951 25 O -0.373 6.373 26 C -0.211 4.211 27 C -0.148 4.148 28 H 0.261 0.739 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.395 0.605 32 H 0.393 0.607 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.375 0.625 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 -14.456 -12.855 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.373 5.373 12 C 0.399 3.601 13 O -0.486 6.486 14 N -0.397 5.397 15 C 0.068 3.932 16 H 0.122 0.878 17 C -0.019 4.019 18 O -0.374 6.374 19 C -0.167 4.167 20 C 0.021 3.979 21 H 0.102 0.898 22 C -0.189 4.189 23 C -0.195 4.195 24 C -0.028 4.028 25 O -0.292 6.292 26 C -0.248 4.248 27 C -0.186 4.186 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.228 0.772 32 H 0.226 0.774 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.221 0.779 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.799 -14.869 -12.568 21.365 hybrid contribution 1.186 1.517 -0.286 1.947 sum 9.985 -13.352 -12.855 21.053 Atomic orbital electron populations 1.69978 1.05867 1.26837 1.48347 1.24979 0.94788 0.98892 0.94370 0.86641 0.79914 0.83637 0.78100 1.20715 1.21213 1.19859 1.20327 0.92775 0.88645 1.51875 0.92288 1.19038 0.98522 0.93846 0.85795 1.20814 0.86680 0.96560 0.89991 1.45123 1.11169 1.63794 1.17218 1.16047 0.84640 0.78684 0.80699 1.90857 1.19925 1.61954 1.75824 1.45047 1.08357 1.67098 1.19180 1.20731 0.99134 0.91903 0.81415 0.87756 1.22744 0.87555 0.93921 0.97638 1.86440 1.36344 1.49393 1.65270 1.22151 0.99217 0.96078 0.99271 1.22815 0.85297 0.90077 0.99695 0.89846 1.23188 0.98254 0.94719 1.02732 1.23264 0.96591 0.97027 1.02626 1.23356 0.93841 0.86510 0.99058 1.88515 1.31757 1.20277 1.88642 1.23012 0.98591 0.95708 1.07482 1.22486 0.92296 1.01066 1.02766 0.92905 0.91358 0.94814 0.77203 0.77388 0.93453 0.92677 0.77895 0.90436 0.89589 0.90409 0.89972 0.90364 0.90131 0.89942 0.92451 0.91652 0.90459 0.89871 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.63 12.91 55.43 0.72 -23.92 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.50 -13.02 8.63 -34.44 -0.30 -13.32 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.69 1.38 -155.66 -0.21 0.48 16 10 C 0.18 4.34 5.50 -4.04 -0.02 4.31 16 11 N -0.72 -14.72 5.48 -65.22 -0.36 -15.08 16 12 C 0.70 14.03 8.53 -86.92 -0.74 13.29 16 13 O -0.61 -14.44 16.01 5.29 0.08 -14.35 16 14 N -0.74 -11.33 4.40 -58.67 -0.26 -11.59 16 15 C 0.17 2.38 2.33 -67.93 -0.16 2.22 16 16 H 0.10 1.68 7.19 -51.93 -0.37 1.31 16 17 C 0.06 0.77 6.85 37.16 0.25 1.03 16 18 O -0.57 -6.69 12.83 -35.23 -0.45 -7.14 16 19 C -0.13 -1.34 4.04 -26.73 -0.11 -1.45 16 20 C 0.08 0.83 3.46 -26.01 -0.09 0.74 16 21 H 0.08 0.98 7.63 -51.93 -0.40 0.58 16 22 C -0.15 -1.17 6.54 -24.78 -0.16 -1.33 16 23 C -0.16 -1.14 7.16 -24.48 -0.18 -1.31 16 24 C 0.05 0.44 7.78 38.18 0.30 0.73 16 25 O -0.37 -4.69 10.55 -35.23 -0.37 -5.06 16 26 C -0.21 -4.47 9.96 -26.70 -0.27 -4.74 16 27 C -0.15 -3.45 9.42 -26.70 -0.25 -3.70 16 28 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 29 H 0.07 1.86 8.14 -51.93 -0.42 1.43 16 30 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.39 7.36 8.38 -40.82 -0.34 7.02 16 32 H 0.39 5.18 8.62 -40.82 -0.35 4.83 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.37 2.96 9.12 45.56 0.42 3.38 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.85 7.73 -51.93 -0.40 0.45 16 38 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 47 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -32.46 386.59 -9.19 -41.64 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -7.32 Total: 15.04 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.03 Total: -1.16 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.10 Total: -50.58 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.74 Total: -26.56 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.46 -9.19 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884314129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.289 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds