Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47209 * 270.00382 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00322 * 3 2 1 6 6 H 1.48499 * 109.47211 * 150.00422 * 3 2 1 7 7 C 1.37874 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00299 * 173.55228 * 7 2 1 9 9 C 1.50701 * 119.99795 * 353.55422 * 7 2 1 10 10 C 1.52989 * 115.55117 * 85.40269 * 9 7 2 11 11 N 1.46510 * 109.47181 * 65.14383 * 10 9 7 12 12 C 1.34775 * 119.99908 * 178.28698 * 11 10 9 13 13 O 1.21589 * 120.00408 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99987 * 180.27551 * 12 11 10 15 15 C 1.46493 * 120.00122 * 179.72514 * 14 12 11 16 16 H 1.08996 * 109.47440 * 324.99495 * 15 14 12 17 17 C 1.53007 * 109.47300 * 84.99837 * 15 14 12 18 18 O 1.42901 * 109.46904 * 64.99793 * 17 15 14 19 19 C 1.53005 * 109.46948 * 204.99613 * 15 14 12 20 20 C 1.52994 * 109.46859 * 65.00241 * 19 15 14 21 21 H 1.09004 * 109.82742 * 305.56623 * 20 19 15 22 22 C 1.54381 * 109.83013 * 184.58747 * 20 19 15 23 23 C 1.55309 * 102.25319 * 219.12873 * 22 20 19 24 24 C 1.54939 * 100.94178 * 34.13305 * 23 22 20 25 25 O 1.43236 * 109.83470 * 66.45428 * 20 19 15 26 26 C 1.53002 * 117.49433 * 231.07695 * 9 7 2 27 27 C 1.53001 * 117.49717 * 299.73020 * 9 7 2 28 28 H 0.97000 * 120.00393 * 5.06321 * 1 2 3 29 29 H 1.08996 * 109.47917 * 305.14041 * 10 9 7 30 30 H 1.09005 * 109.47267 * 185.13588 * 10 9 7 31 31 H 0.96998 * 119.99783 * 358.28233 * 11 10 9 32 32 H 0.96998 * 119.99645 * 359.71986 * 14 12 11 33 33 H 1.08990 * 109.46874 * 184.99731 * 17 15 14 34 34 H 1.08994 * 109.46888 * 305.00294 * 17 15 14 35 35 H 0.96702 * 113.99988 * 180.02562 * 18 17 15 36 36 H 1.09002 * 109.46570 * 184.99899 * 19 15 14 37 37 H 1.09000 * 109.47265 * 305.00016 * 19 15 14 38 38 H 1.08998 * 110.85068 * 337.31823 * 22 20 19 39 39 H 1.08995 * 110.85137 * 100.93993 * 22 20 19 40 40 H 1.09001 * 111.12485 * 276.20944 * 23 22 20 41 41 H 1.08999 * 111.16304 * 152.06487 * 23 22 20 42 42 H 1.09006 * 110.31068 * 204.64184 * 24 23 22 43 43 H 1.09003 * 110.39771 * 82.51521 * 24 23 22 44 44 H 1.08999 * 117.49575 * 215.00081 * 26 9 7 45 45 H 1.08994 * 117.50150 * 0.02562 * 26 9 7 46 46 H 1.09006 * 117.49625 * 359.97438 * 27 9 7 47 47 H 1.08997 * 117.49753 * 144.97457 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1056 9 6 1.2582 -2.4951 0.1454 10 6 0.7021 -3.0859 -1.1516 11 7 1.8112 -3.4583 -2.0335 12 6 1.5599 -4.0344 -3.2257 13 8 0.4129 -4.2456 -3.5692 14 7 2.5804 -4.3821 -4.0346 15 6 2.3075 -5.0138 -5.3279 16 1 1.4346 -5.6605 -5.2394 17 6 2.0373 -3.9330 -6.3766 18 8 3.2207 -3.1573 -6.5770 19 6 3.5181 -5.8467 -5.7541 20 6 3.7127 -7.0033 -4.7717 21 1 3.7816 -6.6170 -3.7547 22 6 4.9981 -7.7813 -5.1266 23 6 4.5718 -9.2537 -4.8767 24 6 3.0820 -9.2043 -5.2994 25 8 2.6131 -7.9158 -4.8713 26 6 1.7472 -3.4737 1.2150 27 6 0.4419 -2.7017 1.4228 28 1 -0.4851 0.8367 -0.0741 29 1 0.0754 -2.3456 -1.6488 30 1 0.1076 -3.9703 -0.9225 31 1 2.7263 -3.2900 -1.7594 32 1 3.4955 -4.2138 -3.7605 33 1 1.7476 -4.4030 -7.3163 34 1 1.2322 -3.2846 -6.0311 35 1 3.1222 -2.4512 -7.2303 36 1 3.3511 -6.2445 -6.7552 37 1 4.4088 -5.2184 -5.7567 38 1 5.2685 -7.6278 -6.1713 39 1 5.8179 -7.4976 -4.4668 40 1 4.6730 -9.5187 -3.8243 41 1 5.1367 -9.9395 -5.5080 42 1 2.5211 -9.9956 -4.8019 43 1 2.9908 -9.2998 -6.3814 44 1 1.6727 -4.5386 0.9946 45 1 2.6083 -3.1764 1.8133 46 1 0.4451 -1.8968 2.1579 47 1 -0.4915 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884314129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -136.676081 kcal Electronic energy + Delta-G solvation = -26889.308174 eV Core-core repulsion = 23071.494434 eV Total energy + Delta-G solvation = -3817.813740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.19878 -40.30670 -38.73050 -37.99862 -35.78937 -34.90789 -33.95788 -33.11598 -32.41282 -29.90360 -27.92636 -26.88403 -26.52395 -23.22205 -22.93489 -22.26862 -21.86496 -21.39455 -21.15269 -19.36653 -18.30120 -18.07012 -17.70691 -17.17573 -16.92550 -16.64607 -16.35489 -15.96610 -15.70003 -15.26058 -15.01348 -14.86337 -14.71012 -14.43721 -14.24235 -14.14657 -13.67102 -13.46599 -12.98048 -12.92279 -12.88497 -12.82166 -12.63508 -12.42661 -12.33555 -12.03439 -11.94690 -11.67333 -11.58574 -11.49711 -11.25571 -10.89621 -10.83295 -10.47708 -10.44979 -10.18804 -10.01707 -9.54489 -8.08049 -6.21207 1.42722 1.44941 1.53671 1.87223 2.29659 2.43632 2.96721 3.19849 3.33945 3.43462 3.59183 3.64339 3.69056 4.01648 4.08567 4.19067 4.26479 4.27536 4.42029 4.45877 4.49159 4.57627 4.66155 4.67437 4.75621 4.80206 4.84334 4.93283 4.96417 4.97525 5.00561 5.04757 5.13082 5.21015 5.28142 5.33736 5.59999 5.61924 5.66052 5.74993 5.80671 6.18794 6.21594 6.38553 6.85448 6.86374 7.28439 7.47907 7.74083 8.99554 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.003365 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.501197 B = 8319.808001 C = 9117.911657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.007 3.993 10 C 0.201 3.799 11 N -0.716 5.716 12 C 0.696 3.304 13 O -0.647 6.647 14 N -0.721 5.721 15 C 0.169 3.831 16 H 0.076 0.924 17 C 0.068 3.932 18 O -0.574 6.574 19 C -0.114 4.114 20 C 0.072 3.928 21 H 0.066 0.934 22 C -0.145 4.145 23 C -0.152 4.152 24 C 0.039 3.961 25 O -0.407 6.407 26 C -0.175 4.175 27 C -0.159 4.159 28 H 0.258 0.742 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.405 0.595 32 H 0.406 0.594 33 H 0.075 0.925 34 H 0.020 0.980 35 H 0.393 0.607 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.998 -15.364 -13.835 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.006 3.994 10 C 0.076 3.924 11 N -0.369 5.369 12 C 0.396 3.604 13 O -0.530 6.530 14 N -0.376 5.376 15 C 0.063 3.937 16 H 0.094 0.906 17 C -0.011 4.011 18 O -0.382 6.382 19 C -0.152 4.152 20 C 0.015 3.985 21 H 0.084 0.916 22 C -0.182 4.182 23 C -0.189 4.189 24 C -0.037 4.037 25 O -0.328 6.328 26 C -0.213 4.213 27 C -0.197 4.197 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.240 0.760 32 H 0.242 0.758 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.242 0.758 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.823 -15.785 -13.572 23.941 hybrid contribution 0.255 1.746 -0.029 1.765 sum 12.078 -14.039 -13.600 22.977 Atomic orbital electron populations 1.70112 1.07312 1.27285 1.49873 1.25719 0.95457 1.02123 0.94393 0.85667 0.78968 0.79743 0.77914 1.20682 1.21550 1.18683 1.20642 0.93092 0.89534 1.50809 0.91832 1.19044 0.99695 0.94482 0.86186 1.20364 0.87030 0.94953 0.90031 1.44900 1.10848 1.63941 1.17217 1.16220 0.84899 0.78438 0.80814 1.90826 1.22023 1.63557 1.76627 1.44909 1.07889 1.65755 1.19081 1.20878 0.99881 0.92248 0.80663 0.90603 1.22547 0.86917 0.93252 0.98385 1.86383 1.35444 1.50108 1.66260 1.22072 0.97729 0.95562 0.99849 1.22873 0.86465 0.90313 0.98842 0.91574 1.23176 0.96864 0.94296 1.03857 1.23258 0.95452 0.97310 1.02894 1.23570 0.95123 0.85182 0.99822 1.88486 1.33398 1.21916 1.88979 1.22992 0.97381 0.96177 1.04707 1.22431 0.93732 1.01405 1.02120 0.93270 0.95800 0.95278 0.75983 0.75811 0.90709 0.96176 0.75773 0.88929 0.88375 0.88931 0.88887 0.90737 0.87849 0.89873 0.91269 0.89532 0.89421 0.91654 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.37 12.91 21.45 0.28 -52.09 16 2 C 0.02 1.27 5.39 84.65 0.46 1.73 16 3 Si 0.95 42.78 29.55 68.60 2.03 44.80 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.50 -26.13 8.63 25.60 0.22 -25.91 16 8 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.01 0.32 1.38 -52.93 -0.07 0.25 16 10 C 0.20 9.76 5.50 86.37 0.48 10.24 16 11 N -0.72 -29.47 5.48 -478.53 -2.62 -32.09 16 12 C 0.70 28.45 8.53 179.05 1.53 29.98 16 13 O -0.65 -32.09 16.01 -4.00 -0.06 -32.15 16 14 N -0.72 -21.82 4.40 -457.81 -2.02 -23.84 16 15 C 0.17 4.52 2.33 45.00 0.10 4.63 16 16 H 0.08 2.51 7.19 -2.39 -0.02 2.50 16 17 C 0.07 1.69 6.85 71.98 0.49 2.18 16 18 O -0.57 -12.30 12.83 -148.98 -1.91 -14.21 16 19 C -0.11 -2.15 4.04 30.59 0.12 -2.02 16 20 C 0.07 1.42 3.46 31.06 0.11 1.53 16 21 H 0.07 1.49 7.63 -2.39 -0.02 1.47 16 22 C -0.14 -1.81 6.54 31.86 0.21 -1.60 16 23 C -0.15 -1.81 7.16 32.05 0.23 -1.59 16 24 C 0.04 0.64 7.78 72.65 0.56 1.21 16 25 O -0.41 -10.04 10.55 -148.98 -1.57 -11.61 16 26 C -0.18 -7.15 9.96 30.62 0.30 -6.85 16 27 C -0.16 -7.41 9.42 30.62 0.29 -7.12 16 28 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 29 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.03 1.41 8.09 -2.38 -0.02 1.39 16 31 H 0.41 14.82 8.38 -92.71 -0.78 14.04 16 32 H 0.41 10.19 8.62 -92.71 -0.80 9.39 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.39 5.34 9.12 -74.06 -0.68 4.66 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.64 7.73 -2.39 -0.02 1.62 16 38 H 0.09 0.91 7.85 -2.39 -0.02 0.89 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.06 3.26 8.14 -2.38 -0.02 3.24 16 47 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -71.79 386.59 -2.12 -73.91 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -1.27 Total: 40.62 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.03 Total: 6.66 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -4.36 Total: -108.01 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -3.55 Total: -57.98 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.79 -2.12 -73.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884314129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.767 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds