Wall clock time and date at job start Fri Apr 10 2020 18:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46092 * 118.73090 * 2 1 4 4 C 1.53018 * 109.92591 * 161.61630 * 3 2 1 5 5 O 1.43261 * 108.65641 * 49.17300 * 4 3 2 6 6 C 1.42965 * 112.98739 * 291.62332 * 5 4 3 7 7 H 1.09001 * 109.35749 * 289.52827 * 6 5 4 8 8 C 1.50698 * 109.41257 * 169.69927 * 6 5 4 9 9 O 1.21276 * 120.00614 * 337.59845 * 8 6 5 10 10 N 1.34782 * 119.99703 * 157.60604 * 8 6 5 11 11 C 1.46500 * 119.99746 * 184.89316 * 10 8 6 12 12 C 1.50700 * 109.47672 * 71.52709 * 11 10 8 13 13 H 1.08003 * 119.99645 * 2.97444 * 12 11 10 14 14 C 1.37876 * 120.00534 * 182.97242 * 12 11 10 15 15 N 1.31513 * 119.99600 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00175 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47207 * 89.99811 * 16 14 12 18 18 H 1.48497 * 109.47296 * 209.99812 * 16 14 12 19 19 H 1.48504 * 109.47109 * 330.00273 * 16 14 12 20 20 C 1.46492 * 119.99979 * 4.88775 * 10 8 6 21 21 C 1.53004 * 109.47429 * 261.92569 * 20 10 8 22 22 C 1.53000 * 109.47105 * 51.08013 * 21 20 10 23 23 C 1.53000 * 109.47444 * 171.08189 * 21 20 10 24 24 C 1.53005 * 109.46980 * 291.08320 * 21 20 10 25 25 C 1.33871 * 118.72808 * 179.97438 * 2 1 3 26 26 O 1.21285 * 118.83377 * 1.91344 * 25 2 1 27 27 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46926 * 300.02663 * 1 2 3 29 29 H 1.09000 * 109.46672 * 60.02588 * 1 2 3 30 30 H 1.09003 * 109.38863 * 281.75384 * 3 2 1 31 31 H 1.08999 * 109.39736 * 41.47319 * 3 2 1 32 32 H 1.09000 * 109.60711 * 168.91223 * 4 3 2 33 33 H 1.08999 * 109.60193 * 289.40953 * 4 3 2 34 34 H 1.09005 * 109.47040 * 191.53029 * 11 10 8 35 35 H 1.09001 * 109.47325 * 311.52334 * 11 10 8 36 36 H 0.97002 * 119.99698 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47336 * 21.92355 * 20 10 8 38 38 H 1.09003 * 109.46963 * 141.93172 * 20 10 8 39 39 H 1.09000 * 109.47250 * 67.69432 * 22 21 20 40 40 H 1.08992 * 109.47521 * 187.69990 * 22 21 20 41 41 H 1.09001 * 109.47011 * 307.69895 * 22 21 20 42 42 H 1.09000 * 109.46781 * 60.00200 * 23 21 20 43 43 H 1.08997 * 109.46809 * 179.97438 * 23 21 20 44 44 H 1.08995 * 109.46995 * 300.00173 * 23 21 20 45 45 H 1.09002 * 109.47234 * 70.88579 * 24 21 20 46 46 H 1.09004 * 109.46831 * 190.88311 * 24 21 20 47 47 H 1.08992 * 109.47109 * 310.88636 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1673 1.2811 0.0000 4 6 3.6151 1.0821 0.4537 5 8 4.1834 -0.0027 -0.2897 6 6 3.6084 -1.2688 0.0424 7 1 3.9254 -1.5578 1.0445 8 6 4.0727 -2.3051 -0.9483 9 8 4.4641 -1.9639 -2.0443 10 7 4.0527 -3.6112 -0.6164 11 6 4.6031 -4.6093 -1.5368 12 6 6.1056 -4.4954 -1.5616 13 1 6.6041 -3.7866 -0.9170 14 6 6.8439 -5.2961 -2.4071 15 7 6.2370 -6.1596 -3.1916 16 14 8.7062 -5.1544 -2.4382 17 1 9.2906 -6.0907 -1.4447 18 1 9.2061 -5.4961 -3.7941 19 1 9.1026 -3.7636 -2.1003 20 6 3.4808 -4.0328 0.6646 21 6 4.6047 -4.2354 1.6830 22 6 5.4998 -2.9948 1.7082 23 6 4.0011 -4.4572 3.0713 24 6 5.4370 -5.4569 1.2876 25 6 2.1085 -1.1739 0.0005 26 8 1.4585 -2.1973 -0.0345 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 2.1576 1.6991 -1.0067 31 1 1.6658 1.9688 0.6809 32 1 4.1854 1.9920 0.2665 33 1 3.6358 0.8470 1.5178 34 1 4.3199 -5.6073 -1.2023 35 1 4.2091 -4.4364 -2.5383 36 1 6.7564 -6.7232 -3.7861 37 1 2.7963 -3.2659 1.0269 38 1 2.9393 -4.9692 0.5302 39 1 4.9427 -2.1532 2.1199 40 1 6.3742 -3.1902 2.3289 41 1 5.8200 -2.7572 0.6938 42 1 3.3635 -5.3411 3.0532 43 1 4.8018 -4.6020 3.7966 44 1 3.4082 -3.5871 3.3529 45 1 6.0197 -5.2263 0.3957 46 1 6.1104 -5.7174 2.1042 47 1 4.7740 -6.2970 1.0812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900590218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:32 Heat of formation + Delta-G solvation = -93.003819 kcal Electronic energy + Delta-G solvation = -29130.448626 eV Core-core repulsion = 25314.528657 eV Total energy + Delta-G solvation = -3815.919969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12425 -39.00770 -37.80348 -36.77724 -35.43054 -33.66452 -32.41506 -30.60374 -29.43224 -27.78612 -27.07745 -26.45981 -25.84711 -24.98245 -23.92794 -22.74305 -19.59715 -19.18861 -18.16816 -18.04738 -16.93136 -16.80072 -16.44229 -15.86516 -15.37506 -15.09287 -14.69963 -14.32258 -14.19818 -14.05170 -13.81584 -13.52496 -13.45330 -12.88784 -12.83111 -12.57329 -12.37404 -12.26499 -12.12230 -11.96191 -11.70942 -11.56283 -11.33370 -11.10623 -10.99468 -10.79656 -10.72140 -10.57519 -10.43272 -10.21645 -10.02710 -9.93909 -9.35159 -9.27921 -8.97224 -8.81586 -8.37187 -7.52036 -5.98670 -3.99369 2.33296 2.56052 3.22193 3.34924 3.41974 3.47766 3.55868 4.19551 4.23665 4.50144 4.54064 4.76348 4.86110 5.00389 5.06054 5.16175 5.25412 5.26058 5.28614 5.32545 5.35255 5.48613 5.54644 5.67069 5.81766 5.88411 5.95063 6.07604 6.11726 6.21142 6.33129 6.37621 6.57670 6.62992 6.67102 6.72789 6.86850 7.08824 7.13511 7.51580 7.54067 7.64104 7.91301 7.99200 8.24085 8.47462 8.95164 9.11895 9.61744 11.09460 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.005246 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.814686 B = 5336.121581 C = 5922.713955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.610 5.610 3 C 0.079 3.921 4 C 0.039 3.961 5 O -0.339 6.339 6 C 0.042 3.958 7 H 0.123 0.877 8 C 0.532 3.468 9 O -0.508 6.508 10 N -0.578 5.578 11 C 0.252 3.748 12 C -0.511 4.511 13 H 0.062 0.938 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.114 3.886 21 C -0.086 4.086 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.165 4.165 25 C 0.499 3.501 26 O -0.519 6.519 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.115 0.885 46 H 0.035 0.965 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 12.939 13.431 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.345 5.345 3 C -0.044 4.044 4 C -0.038 4.038 5 O -0.256 6.256 6 C -0.023 4.023 7 H 0.139 0.861 8 C 0.314 3.686 9 O -0.382 6.382 10 N -0.310 5.310 11 C 0.134 3.866 12 C -0.549 4.549 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.010 4.010 21 C -0.087 4.087 22 C -0.204 4.204 23 C -0.194 4.194 24 C -0.221 4.221 25 C 0.286 3.714 26 O -0.396 6.396 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.133 0.867 46 H 0.054 0.946 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.040 12.437 12.493 19.811 hybrid contribution 0.731 0.181 0.302 0.811 sum -8.309 12.618 12.794 19.798 Atomic orbital electron populations 1.21764 0.78953 1.04836 1.01256 1.47318 1.07541 1.05879 1.73743 1.22194 0.93604 0.85386 1.03198 1.23071 0.92615 0.92132 0.96014 1.88372 1.60323 1.13362 1.63515 1.22879 0.89105 0.87518 1.02757 0.86063 1.18930 0.80011 0.82750 0.86890 1.90713 1.46010 1.79790 1.21684 1.47995 1.58125 1.05743 1.19127 1.19331 0.93566 0.85412 0.88339 1.21291 0.91111 1.20463 1.22036 0.91999 1.24900 0.98606 0.95392 0.95086 1.69934 1.35598 1.23135 1.24475 0.86570 0.85612 0.78460 0.77304 1.20675 1.21207 1.19773 1.21824 0.94136 1.01365 0.83686 1.20971 0.96310 0.97033 0.94366 1.22109 0.99035 0.96050 1.03232 1.21842 1.00321 1.00990 0.96296 1.22360 1.00118 0.95525 1.04108 1.20588 0.90725 0.83691 0.76373 1.90727 1.66839 1.33209 1.48792 0.88915 0.92099 0.92061 0.90392 0.89549 0.86199 0.91903 0.94310 0.94887 0.92799 0.90362 0.90868 0.94161 0.92716 0.90790 0.92737 0.92813 0.93532 0.86698 0.94571 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.58 59.85 0.63 1.37 16 2 N -0.61 -7.67 3.23 -182.30 -0.59 -8.26 16 3 C 0.08 0.72 6.69 -4.25 -0.03 0.69 16 4 C 0.04 0.39 6.90 37.17 0.26 0.64 16 5 O -0.34 -5.58 10.12 -54.09 -0.55 -6.13 16 6 C 0.04 0.73 2.27 -29.21 -0.07 0.66 16 7 H 0.12 1.89 3.73 -51.93 -0.19 1.70 16 8 C 0.53 12.15 4.95 -10.98 -0.05 12.10 16 9 O -0.51 -13.92 16.27 -13.30 -0.22 -14.14 16 10 N -0.58 -12.90 1.89 -175.06 -0.33 -13.23 16 11 C 0.25 6.63 4.29 -5.19 -0.02 6.60 16 12 C -0.51 -14.09 6.14 -34.44 -0.21 -14.30 16 13 H 0.06 1.72 6.34 -52.48 -0.33 1.39 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.11 2.08 3.91 -4.04 -0.02 2.06 16 21 C -0.09 -1.39 0.85 -154.50 -0.13 -1.53 16 22 C -0.15 -2.38 7.04 37.16 0.26 -2.12 16 23 C -0.14 -1.77 8.43 37.16 0.31 -1.46 16 24 C -0.16 -3.03 7.53 37.16 0.28 -2.75 16 25 C 0.50 8.26 6.89 -11.56 -0.08 8.18 16 26 O -0.52 -9.75 13.08 5.55 0.07 -9.68 16 27 H 0.09 1.09 6.71 -51.93 -0.35 0.74 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.48 8.13 -51.93 -0.42 0.05 16 32 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.04 1.02 7.47 -51.93 -0.39 0.63 16 35 H 0.03 0.99 7.94 -51.93 -0.41 0.58 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.08 1.34 4.21 -51.93 -0.22 1.13 16 38 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 39 H 0.04 0.55 6.07 -51.93 -0.32 0.24 16 40 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 41 H 0.07 1.46 4.81 -51.93 -0.25 1.21 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.11 2.55 4.12 -51.93 -0.21 2.34 16 46 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 47 H 0.05 0.84 8.02 -51.93 -0.42 0.42 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -34.99 355.74 -6.78 -41.77 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.28 Total: 1.20 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 1.04 Total: 11.82 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.18 Total: -47.15 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.69 Total: -29.94 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.99 -6.78 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900590218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.236 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds