Wall clock time and date at job start Fri Apr 10 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46092 * 118.73090 * 2 1 4 4 C 1.53018 * 109.92591 * 161.61630 * 3 2 1 5 5 O 1.43261 * 108.65641 * 49.17300 * 4 3 2 6 6 C 1.42965 * 112.98739 * 291.62332 * 5 4 3 7 7 H 1.09001 * 109.35749 * 289.52827 * 6 5 4 8 8 C 1.50698 * 109.41257 * 169.69927 * 6 5 4 9 9 O 1.21276 * 120.00614 * 337.59845 * 8 6 5 10 10 N 1.34782 * 119.99703 * 157.60604 * 8 6 5 11 11 C 1.46500 * 119.99746 * 184.89316 * 10 8 6 12 12 C 1.50700 * 109.47672 * 71.52709 * 11 10 8 13 13 H 1.08003 * 119.99645 * 2.97444 * 12 11 10 14 14 C 1.37876 * 120.00534 * 182.97242 * 12 11 10 15 15 N 1.31513 * 119.99600 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00175 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47207 * 89.99811 * 16 14 12 18 18 H 1.48497 * 109.47296 * 209.99812 * 16 14 12 19 19 H 1.48504 * 109.47109 * 330.00273 * 16 14 12 20 20 C 1.46492 * 119.99979 * 4.88775 * 10 8 6 21 21 C 1.53004 * 109.47429 * 261.92569 * 20 10 8 22 22 C 1.53000 * 109.47105 * 51.08013 * 21 20 10 23 23 C 1.53000 * 109.47444 * 171.08189 * 21 20 10 24 24 C 1.53005 * 109.46980 * 291.08320 * 21 20 10 25 25 C 1.33871 * 118.72808 * 179.97438 * 2 1 3 26 26 O 1.21285 * 118.83377 * 1.91344 * 25 2 1 27 27 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46926 * 300.02663 * 1 2 3 29 29 H 1.09000 * 109.46672 * 60.02588 * 1 2 3 30 30 H 1.09003 * 109.38863 * 281.75384 * 3 2 1 31 31 H 1.08999 * 109.39736 * 41.47319 * 3 2 1 32 32 H 1.09000 * 109.60711 * 168.91223 * 4 3 2 33 33 H 1.08999 * 109.60193 * 289.40953 * 4 3 2 34 34 H 1.09005 * 109.47040 * 191.53029 * 11 10 8 35 35 H 1.09001 * 109.47325 * 311.52334 * 11 10 8 36 36 H 0.97002 * 119.99698 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47336 * 21.92355 * 20 10 8 38 38 H 1.09003 * 109.46963 * 141.93172 * 20 10 8 39 39 H 1.09000 * 109.47250 * 67.69432 * 22 21 20 40 40 H 1.08992 * 109.47521 * 187.69990 * 22 21 20 41 41 H 1.09001 * 109.47011 * 307.69895 * 22 21 20 42 42 H 1.09000 * 109.46781 * 60.00200 * 23 21 20 43 43 H 1.08997 * 109.46809 * 179.97438 * 23 21 20 44 44 H 1.08995 * 109.46995 * 300.00173 * 23 21 20 45 45 H 1.09002 * 109.47234 * 70.88579 * 24 21 20 46 46 H 1.09004 * 109.46831 * 190.88311 * 24 21 20 47 47 H 1.08992 * 109.47109 * 310.88636 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1673 1.2811 0.0000 4 6 3.6151 1.0821 0.4537 5 8 4.1834 -0.0027 -0.2897 6 6 3.6084 -1.2688 0.0424 7 1 3.9254 -1.5578 1.0445 8 6 4.0727 -2.3051 -0.9483 9 8 4.4641 -1.9639 -2.0443 10 7 4.0527 -3.6112 -0.6164 11 6 4.6031 -4.6093 -1.5368 12 6 6.1056 -4.4954 -1.5616 13 1 6.6041 -3.7866 -0.9170 14 6 6.8439 -5.2961 -2.4071 15 7 6.2370 -6.1596 -3.1916 16 14 8.7062 -5.1544 -2.4382 17 1 9.2906 -6.0907 -1.4447 18 1 9.2061 -5.4961 -3.7941 19 1 9.1026 -3.7636 -2.1003 20 6 3.4808 -4.0328 0.6646 21 6 4.6047 -4.2354 1.6830 22 6 5.4998 -2.9948 1.7082 23 6 4.0011 -4.4572 3.0713 24 6 5.4370 -5.4569 1.2876 25 6 2.1085 -1.1739 0.0005 26 8 1.4585 -2.1973 -0.0345 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 2.1576 1.6991 -1.0067 31 1 1.6658 1.9688 0.6809 32 1 4.1854 1.9920 0.2665 33 1 3.6358 0.8470 1.5178 34 1 4.3199 -5.6073 -1.2023 35 1 4.2091 -4.4364 -2.5383 36 1 6.7564 -6.7232 -3.7861 37 1 2.7963 -3.2659 1.0269 38 1 2.9393 -4.9692 0.5302 39 1 4.9427 -2.1532 2.1199 40 1 6.3742 -3.1902 2.3289 41 1 5.8200 -2.7572 0.6938 42 1 3.3635 -5.3411 3.0532 43 1 4.8018 -4.6020 3.7966 44 1 3.4082 -3.5871 3.3529 45 1 6.0197 -5.2263 0.3957 46 1 6.1104 -5.7174 2.1042 47 1 4.7740 -6.2970 1.0812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900590218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:31 Heat of formation + Delta-G solvation = -117.601885 kcal Electronic energy + Delta-G solvation = -29131.515278 eV Core-core repulsion = 25314.528657 eV Total energy + Delta-G solvation = -3816.986621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.40852 -40.53153 -39.00824 -38.33401 -36.53603 -35.53154 -34.40167 -31.76898 -30.66269 -29.46307 -28.30748 -27.77190 -27.07917 -26.63054 -24.80788 -24.71574 -21.08517 -20.40361 -19.55049 -19.25582 -18.79120 -18.09302 -17.98837 -17.22742 -16.76797 -16.49765 -16.28765 -15.73379 -15.50554 -15.28777 -15.14817 -14.88169 -14.75957 -14.30352 -14.14655 -14.00245 -13.72376 -13.67733 -13.46637 -13.20180 -13.10165 -12.98131 -12.76539 -12.60112 -12.48249 -12.32416 -12.30001 -12.15305 -12.03349 -11.73434 -11.54242 -11.51153 -11.19016 -10.68549 -10.57082 -10.46704 -9.88228 -9.39035 -8.17347 -6.24710 1.04039 1.33244 1.37485 1.40112 1.50480 1.90556 2.09255 2.40734 2.84605 3.11301 3.14063 3.42870 3.69642 3.76362 3.92519 3.94450 4.12710 4.20188 4.30438 4.42876 4.49459 4.58254 4.63012 4.66109 4.73915 4.81265 4.88869 4.91255 4.92700 4.97275 5.01218 5.16219 5.17753 5.20979 5.27237 5.28320 5.41481 5.46461 5.68010 5.71002 5.87261 5.92836 6.08276 6.10553 6.62789 6.75708 6.80721 7.25811 7.43007 8.91006 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.005246 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.814686 B = 5336.121581 C = 5922.713955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.073 3.927 4 C 0.027 3.973 5 O -0.372 6.372 6 C 0.059 3.941 7 H 0.142 0.858 8 C 0.521 3.479 9 O -0.571 6.571 10 N -0.579 5.579 11 C 0.270 3.730 12 C -0.505 4.505 13 H 0.057 0.943 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.958 3.042 17 H -0.262 1.262 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.112 3.888 21 C -0.081 4.081 22 C -0.144 4.144 23 C -0.129 4.129 24 C -0.162 4.162 25 C 0.491 3.509 26 O -0.555 6.555 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.031 0.969 35 H -0.019 1.019 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 15.403 16.875 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C -0.049 4.049 4 C -0.049 4.049 5 O -0.291 6.291 6 C -0.005 4.005 7 H 0.158 0.842 8 C 0.307 3.693 9 O -0.450 6.450 10 N -0.309 5.309 11 C 0.150 3.850 12 C -0.544 4.544 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.570 5.570 16 Si 0.783 3.217 17 H -0.187 1.187 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.011 4.011 21 C -0.083 4.083 22 C -0.201 4.201 23 C -0.187 4.187 24 C -0.219 4.219 25 C 0.277 3.723 26 O -0.435 6.435 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.106 0.894 34 H 0.049 0.951 35 H -0.001 1.001 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.358 14.949 15.999 23.812 hybrid contribution 0.728 -0.469 -0.770 1.159 sum -8.630 14.479 15.229 22.717 Atomic orbital electron populations 1.21978 0.77156 1.04154 1.03825 1.47495 1.08816 1.05801 1.71450 1.22527 0.93350 0.84313 1.04676 1.23592 0.93366 0.91060 0.96845 1.88338 1.61352 1.13980 1.65390 1.22466 0.90089 0.86882 1.01104 0.84175 1.19872 0.78685 0.83585 0.87205 1.90657 1.48863 1.80941 1.24562 1.47951 1.57608 1.05464 1.19920 1.18801 0.93280 0.86118 0.86827 1.21377 0.91575 1.19809 1.21600 0.92491 1.25740 1.03352 0.95148 0.94802 1.70059 1.37347 1.24160 1.25408 0.85554 0.80014 0.78494 0.77664 1.18720 1.20971 1.19935 1.22072 0.95168 1.01523 0.82322 1.20954 0.95324 0.96161 0.95816 1.22049 0.99955 0.96875 1.01176 1.21773 1.01010 1.02202 0.93667 1.22247 1.00201 0.96399 1.03032 1.20438 0.90145 0.84716 0.77002 1.90708 1.67176 1.34653 1.50913 0.91275 0.88234 0.90644 0.90424 0.84538 0.83177 0.89407 0.95136 1.00081 0.92665 0.88598 0.91513 0.91296 0.91228 0.94896 0.92313 0.91122 0.91477 0.90707 0.92480 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 10.58 127.77 1.35 2.53 16 2 N -0.60 -13.55 3.23 -849.57 -2.75 -16.30 16 3 C 0.07 1.03 6.69 86.46 0.58 1.61 16 4 C 0.03 0.44 6.90 71.99 0.50 0.94 16 5 O -0.37 -11.89 10.12 -130.95 -1.33 -13.22 16 6 C 0.06 2.03 2.27 28.99 0.07 2.10 16 7 H 0.14 4.13 3.73 -2.39 -0.01 4.12 16 8 C 0.52 24.93 4.95 87.66 0.43 25.36 16 9 O -0.57 -33.42 16.27 15.02 0.24 -33.18 16 10 N -0.58 -27.22 1.89 -826.16 -1.56 -28.79 16 11 C 0.27 15.29 4.29 85.63 0.37 15.65 16 12 C -0.51 -29.40 6.14 25.60 0.16 -29.24 16 13 H 0.06 3.32 6.34 -2.91 -0.02 3.30 16 14 C 0.01 0.47 5.46 84.65 0.46 0.93 16 15 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 16 Si 0.96 46.33 29.54 68.60 2.03 48.35 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 20 C 0.11 4.11 3.91 86.38 0.34 4.45 16 21 C -0.08 -2.56 0.85 -52.18 -0.04 -2.60 16 22 C -0.14 -4.41 7.04 71.98 0.51 -3.91 16 23 C -0.13 -2.90 8.43 71.98 0.61 -2.29 16 24 C -0.16 -5.95 7.53 71.98 0.54 -5.41 16 25 C 0.49 15.78 6.89 87.69 0.60 16.39 16 26 O -0.55 -20.91 13.08 -3.04 -0.04 -20.95 16 27 H 0.07 1.54 6.71 -2.39 -0.02 1.52 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.14 0.65 8.13 -2.39 -0.02 0.63 16 32 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.03 1.74 7.47 -2.38 -0.02 1.72 16 35 H -0.02 -1.24 7.94 -2.39 -0.02 -1.26 16 36 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.10 3.23 4.21 -2.39 -0.01 3.22 16 38 H 0.07 2.51 7.91 -2.39 -0.02 2.49 16 39 H 0.07 1.68 6.07 -2.39 -0.01 1.66 16 40 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 41 H 0.03 1.29 4.81 -2.39 -0.01 1.28 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.07 3.42 4.12 -2.39 -0.01 3.41 16 46 H 0.06 1.81 8.10 -2.38 -0.02 1.79 16 47 H 0.04 1.41 8.02 -2.39 -0.02 1.39 16 Total: -1.00 -84.30 355.74 4.32 -79.99 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.97 Total: 14.82 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 6.46 Total: 26.51 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -4.03 Total: -102.32 kcal Atomic # 8 Polarization: -66.22 SS G_CDS: -1.12 Total: -67.34 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -84.30 4.32 -79.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900590218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.615 kcal (2) G-P(sol) polarization free energy of solvation -84.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds