Wall clock time and date at job start Fri Apr 10 2020 18:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46602 * 2 1 4 4 H 1.08999 * 109.46848 * 304.65569 * 3 2 1 5 5 O 1.42893 * 109.47412 * 64.66176 * 3 2 1 6 6 C 1.42891 * 114.00330 * 258.73983 * 5 3 2 7 7 C 1.50709 * 109.46693 * 184.66528 * 3 2 1 8 8 O 1.21279 * 119.99330 * 249.95745 * 7 3 2 9 9 N 1.34768 * 119.99981 * 69.95573 * 7 3 2 10 10 C 1.47087 * 125.63231 * 5.07571 * 9 7 3 11 11 C 1.54459 * 107.42369 * 181.06124 * 10 9 7 12 12 C 1.54377 * 102.86497 * 21.43196 * 11 10 9 13 13 C 1.47887 * 125.79706 * 185.03461 * 9 7 3 14 14 C 1.52362 * 110.37890 * 207.57709 * 12 11 10 15 15 N 1.47337 * 108.40658 * 286.59621 * 14 12 11 16 16 C 1.36939 * 121.06768 * 130.80321 * 15 14 12 17 17 H 1.08005 * 119.99584 * 209.14180 * 16 15 14 18 18 C 1.38815 * 120.00349 * 29.14698 * 16 15 14 19 19 N 1.31614 * 119.99611 * 11.23568 * 18 16 15 20 20 Si 1.86796 * 119.99957 * 191.23883 * 18 16 15 21 21 H 1.48499 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47242 * 119.99863 * 20 18 16 23 23 H 1.48499 * 109.46979 * 239.99828 * 20 18 16 24 24 C 1.47161 * 117.85301 * 310.82710 * 15 14 12 25 25 C 1.53276 * 108.56127 * 51.22187 * 24 15 14 26 26 O 1.41881 * 110.71795 * 83.68668 * 12 11 10 27 27 H 1.09003 * 109.47268 * 297.21135 * 1 2 3 28 28 H 1.09004 * 109.47119 * 57.21266 * 1 2 3 29 29 H 1.08997 * 109.46921 * 177.21027 * 1 2 3 30 30 H 1.08998 * 109.47547 * 239.99833 * 2 1 3 31 31 H 1.09004 * 109.47203 * 119.99252 * 2 1 3 32 32 H 1.09007 * 109.46875 * 64.52993 * 6 5 3 33 33 H 1.09004 * 109.47618 * 184.53022 * 6 5 3 34 34 H 1.09000 * 109.46986 * 304.53031 * 6 5 3 35 35 H 1.09005 * 109.87354 * 61.56651 * 10 9 7 36 36 H 1.08988 * 109.88260 * 300.56489 * 10 9 7 37 37 H 1.08999 * 110.73436 * 139.78112 * 11 10 9 38 38 H 1.09005 * 110.73463 * 262.90950 * 11 10 9 39 39 H 1.09010 * 110.30165 * 37.81697 * 13 9 7 40 40 H 1.09003 * 110.53894 * 275.52606 * 13 9 7 41 41 H 1.08997 * 109.67761 * 46.32980 * 14 12 11 42 42 H 1.09005 * 109.67265 * 166.87452 * 14 12 11 43 43 H 0.97008 * 119.99739 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.62181 * 291.50041 * 24 15 14 45 45 H 1.09002 * 109.77476 * 171.03240 * 24 15 14 46 46 H 1.08996 * 109.51205 * 187.07665 * 25 24 15 47 47 H 1.08997 * 109.51167 * 66.92828 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6100 1.9799 -0.8453 5 8 1.6551 2.0839 1.2176 6 6 0.5220 2.9448 1.0882 7 6 3.5426 1.4442 -0.1156 8 8 4.2231 1.7779 0.8312 9 7 4.1299 1.0747 -1.2709 10 6 3.4294 0.7502 -2.5228 11 6 4.5008 0.3580 -3.5641 12 6 5.7046 -0.0422 -2.6845 13 6 5.5846 0.9284 -1.4936 14 6 7.0103 0.1900 -3.4346 15 7 7.1456 -0.8526 -4.4668 16 6 7.4534 -0.5295 -5.7615 17 1 7.1080 -1.1556 -6.5710 18 6 8.2093 0.6026 -6.0335 19 7 8.8148 1.2404 -5.0543 20 14 8.3669 1.2208 -7.7891 21 1 7.5970 0.3333 -8.6974 22 1 7.8324 2.6034 -7.8770 23 1 9.7971 1.2167 -8.1888 24 6 6.9388 -2.2521 -4.0617 25 6 5.6049 -2.3514 -3.3132 26 8 5.5860 -1.3890 -2.2540 27 1 -0.3634 0.4699 0.9139 28 1 -0.3633 0.5565 -0.8640 29 1 -0.3633 -1.0264 -0.0500 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 -0.3546 2.3541 0.8219 33 1 0.3427 3.4544 2.0350 34 1 0.7134 3.6826 0.3090 35 1 2.8735 1.6202 -2.8727 36 1 2.7475 -0.0843 -2.3604 37 1 4.1639 -0.4867 -4.1649 38 1 4.7497 1.2074 -4.2003 39 1 6.0618 0.5053 -0.6095 40 1 6.0322 1.8908 -1.7417 41 1 6.9932 1.1729 -3.9055 42 1 7.8483 0.1297 -2.7400 43 1 9.3428 2.0317 -5.2443 44 1 7.7507 -2.5672 -3.4062 45 1 6.9117 -2.8913 -4.9442 46 1 5.4945 -3.3528 -2.8973 47 1 4.7848 -2.1502 -4.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972294128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:46 Heat of formation + Delta-G solvation = -109.610025 kcal Electronic energy + Delta-G solvation = -28071.448439 eV Core-core repulsion = 24254.808371 eV Total energy + Delta-G solvation = -3816.640068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73369 -40.47799 -38.71870 -37.47871 -36.24725 -34.44079 -33.23768 -32.78369 -30.89378 -29.67366 -28.92694 -27.55280 -26.23480 -25.18594 -24.15782 -23.05990 -22.73913 -20.73714 -20.28373 -18.90660 -18.57980 -17.94476 -17.41754 -16.89159 -16.69035 -16.53366 -16.15259 -16.11185 -15.73901 -15.25040 -15.15163 -15.02553 -14.57438 -14.56129 -14.24128 -13.96190 -13.75092 -13.61704 -13.36354 -13.06736 -12.94035 -12.82685 -12.74099 -12.62310 -12.45509 -12.29597 -12.22457 -12.08544 -11.88691 -11.85135 -11.64976 -11.15821 -11.11820 -10.76135 -10.50493 -10.38568 -9.73654 -8.67837 -7.87961 -5.39193 1.45920 1.47715 1.50064 1.59706 1.66213 2.48655 2.72737 2.90067 3.26619 3.35279 3.50483 3.57920 3.81257 3.84343 3.91949 4.02989 4.15143 4.28855 4.34199 4.38435 4.42367 4.47404 4.53183 4.57544 4.59289 4.63406 4.68862 4.76477 4.83290 4.85987 4.92384 5.01376 5.05872 5.09904 5.13412 5.15768 5.21559 5.27486 5.39648 5.53634 5.63280 6.06417 6.32472 6.41760 6.45803 7.04097 7.08730 7.75799 8.32211 9.18122 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.003621 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.036654 B = 7730.943515 C = 8097.690572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.087 3.913 4 H 0.115 0.885 5 O -0.391 6.391 6 C 0.017 3.983 7 C 0.516 3.484 8 O -0.580 6.580 9 N -0.608 5.608 10 C 0.102 3.898 11 C -0.136 4.136 12 C 0.094 3.906 13 C 0.128 3.872 14 C 0.176 3.824 15 N -0.608 5.608 16 C -0.256 4.256 17 H 0.075 0.925 18 C -0.048 4.048 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.290 1.290 23 H -0.298 1.298 24 C 0.102 3.898 25 C 0.053 3.947 26 O -0.383 6.383 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.072 0.928 42 H -0.011 1.011 43 H 0.250 0.750 44 H 0.010 0.990 45 H 0.075 0.925 46 H 0.116 0.884 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.689 -1.836 4.427 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.133 0.867 5 O -0.309 6.309 6 C -0.079 4.079 7 C 0.305 3.695 8 O -0.459 6.459 9 N -0.342 5.342 10 C -0.019 4.019 11 C -0.174 4.174 12 C 0.052 3.948 13 C 0.004 3.996 14 C 0.050 3.950 15 N -0.333 5.333 16 C -0.386 4.386 17 H 0.093 0.907 18 C -0.243 4.243 19 N -0.585 5.585 20 Si 0.797 3.203 21 H -0.186 1.186 22 H -0.216 1.216 23 H -0.225 1.225 24 C -0.023 4.023 25 C -0.024 4.024 26 O -0.302 6.302 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.007 0.993 43 H 0.059 0.941 44 H 0.028 0.972 45 H 0.094 0.906 46 H 0.134 0.866 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.223 -1.593 5.333 20.975 hybrid contribution 1.237 0.653 -1.064 1.757 sum -18.986 -0.940 4.270 19.483 Atomic orbital electron populations 1.21815 0.92404 1.03378 1.02757 1.21958 0.98826 0.93127 1.03350 1.22047 0.88615 0.96985 0.89798 0.86713 1.87995 1.49832 1.62502 1.30586 1.23252 0.87708 0.93241 1.03679 1.21101 0.91580 0.76176 0.80623 1.90675 1.66765 1.49340 1.39151 1.48628 1.07258 1.66941 1.11392 1.22407 0.95213 1.02228 0.82069 1.22924 0.94312 1.02944 0.97190 1.22360 0.96553 0.82794 0.93081 1.21938 0.82116 0.98077 0.97456 1.20834 0.90878 0.94149 0.89156 1.44288 1.82112 1.00699 1.06171 1.19544 1.25988 1.09255 0.83831 0.90695 1.25886 0.96846 1.00754 1.00824 1.70153 1.34923 1.21072 1.32344 0.85181 0.76894 0.77947 0.80271 1.18580 1.21637 1.22508 1.21796 0.95736 0.86702 0.98072 1.23182 0.96964 0.92386 0.89892 1.87660 1.94094 1.14715 1.33750 0.92202 0.90708 0.91015 0.89273 0.92551 0.91164 0.88625 0.93037 0.88555 0.88686 0.88532 0.90488 0.91955 0.90411 0.90995 0.99331 0.94096 0.97227 0.90613 0.86596 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.97 71.98 0.65 -1.11 16 2 C -0.13 -2.50 5.56 30.60 0.17 -2.33 16 3 C 0.09 1.96 2.08 29.85 0.06 2.03 16 4 H 0.12 1.84 7.43 -2.39 -0.02 1.83 16 5 O -0.39 -9.96 9.65 -130.13 -1.26 -11.21 16 6 C 0.02 0.25 10.44 113.37 1.18 1.44 16 7 C 0.52 16.80 7.17 87.66 0.63 17.43 16 8 O -0.58 -24.82 16.85 15.82 0.27 -24.56 16 9 N -0.61 -18.56 3.34 -811.77 -2.71 -21.28 16 10 C 0.10 2.34 6.18 86.76 0.54 2.87 16 11 C -0.14 -4.03 5.86 31.56 0.19 -3.84 16 12 C 0.09 3.48 0.84 -10.17 -0.01 3.47 16 13 C 0.13 4.68 6.09 86.49 0.53 5.21 16 14 C 0.18 8.32 4.02 86.01 0.35 8.66 16 15 N -0.61 -29.05 2.97 -698.85 -2.08 -31.13 16 16 C -0.26 -13.19 9.66 84.03 0.81 -12.38 16 17 H 0.08 3.69 7.85 -2.91 -0.02 3.67 16 18 C -0.05 -2.54 5.06 84.86 0.43 -2.11 16 19 N -0.94 -53.98 11.04 21.65 0.24 -53.74 16 20 Si 0.97 42.75 29.57 68.60 2.03 44.78 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 24 C 0.10 4.02 6.71 86.35 0.58 4.60 16 25 C 0.05 1.65 6.78 72.07 0.49 2.14 16 26 O -0.38 -13.94 10.28 -148.95 -1.53 -15.47 16 27 H 0.06 0.75 6.38 -2.39 -0.02 0.73 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.52 5.66 -2.39 -0.01 1.50 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 0.73 5.97 -2.38 -0.01 0.71 16 33 H 0.10 1.27 8.14 -2.38 -0.02 1.26 16 34 H 0.05 0.68 8.02 -2.39 -0.02 0.66 16 35 H 0.10 1.66 8.14 -2.38 -0.02 1.65 16 36 H 0.10 1.73 5.90 -2.39 -0.01 1.71 16 37 H 0.10 2.69 6.07 -2.39 -0.01 2.68 16 38 H 0.08 2.48 7.83 -2.38 -0.02 2.46 16 39 H 0.06 2.53 8.11 -2.38 -0.02 2.51 16 40 H 0.08 2.94 7.99 -2.39 -0.02 2.92 16 41 H 0.07 3.74 6.03 -2.39 -0.01 3.73 16 42 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 43 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.08 2.74 7.97 -2.39 -0.02 2.72 16 46 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 47 H 0.06 1.83 6.22 -2.39 -0.01 1.82 16 Total: -1.00 -72.89 361.35 2.50 -70.39 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.96 Total: 16.14 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 6.58 Total: 26.08 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.55 Total: -106.15 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -2.52 Total: -51.24 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.89 2.50 -70.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972294128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.218 kcal (2) G-P(sol) polarization free energy of solvation -72.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds