Wall clock time and date at job start Fri Apr 10 2020 18:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47168 * 2 1 4 4 O 1.42899 * 109.47271 * 239.99935 * 2 1 3 5 5 C 1.53008 * 109.47093 * 119.99851 * 2 1 3 6 6 C 1.50702 * 109.46893 * 59.99887 * 5 2 1 7 7 O 1.21283 * 120.00152 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99815 * 179.97438 * 6 5 2 9 9 C 1.47091 * 125.63235 * 0.04351 * 8 6 5 10 10 C 1.54461 * 107.30339 * 180.97386 * 9 8 6 11 11 C 1.54344 * 102.87120 * 21.47747 * 10 9 8 12 12 C 1.47575 * 125.63338 * 179.97438 * 8 6 5 13 13 C 1.52367 * 110.42285 * 207.62040 * 11 10 9 14 14 N 1.47334 * 108.39707 * 186.35387 * 13 11 10 15 15 C 1.36939 * 121.07766 * 229.21956 * 14 13 11 16 16 H 1.07999 * 119.99648 * 26.68204 * 15 14 13 17 17 C 1.38807 * 120.00269 * 206.68204 * 15 14 13 18 18 N 1.31618 * 119.99975 * 17.09514 * 17 15 14 19 19 Si 1.86802 * 119.99900 * 197.10094 * 17 15 14 20 20 H 1.48500 * 109.47016 * 94.15178 * 19 17 15 21 21 H 1.48502 * 109.46986 * 214.14972 * 19 17 15 22 22 H 1.48501 * 109.47159 * 334.15033 * 19 17 15 23 23 C 1.47170 * 117.84653 * 49.19899 * 14 13 11 24 24 C 1.53276 * 108.56503 * 308.77738 * 23 14 13 25 25 O 1.41886 * 110.76184 * 83.68715 * 11 10 9 26 26 H 1.09006 * 109.47391 * 300.00138 * 1 2 3 27 27 H 1.08999 * 109.46994 * 59.99861 * 1 2 3 28 28 H 1.09000 * 109.47190 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47267 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47276 * 299.99966 * 3 2 1 31 31 H 1.08998 * 109.47407 * 59.99779 * 3 2 1 32 32 H 0.96698 * 113.99867 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.46935 * 299.99886 * 5 2 1 34 34 H 1.08998 * 109.47119 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.87844 * 300.40088 * 9 8 6 36 36 H 1.09006 * 109.87908 * 61.39473 * 9 8 6 37 37 H 1.09000 * 110.72999 * 263.13503 * 10 9 8 38 38 H 1.09001 * 110.73601 * 139.82534 * 10 9 8 39 39 H 1.09003 * 110.37709 * 37.89319 * 12 8 6 40 40 H 1.08998 * 110.47675 * 275.58814 * 12 8 6 41 41 H 1.09005 * 109.67738 * 306.07856 * 13 11 10 42 42 H 1.08996 * 109.68199 * 66.58556 * 13 11 10 43 43 H 0.97004 * 119.99869 * 180.02562 * 18 17 15 44 44 H 1.09010 * 109.62602 * 68.50019 * 23 14 13 45 45 H 1.09005 * 109.62099 * 189.05171 * 23 14 13 46 46 H 1.09003 * 109.51547 * 172.90979 * 24 23 14 47 47 H 1.09005 * 109.51022 * 293.00384 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2493 6 6 1.5376 -2.1421 1.2493 7 8 0.8407 -2.5389 0.3395 8 7 1.8636 -2.9721 2.2599 9 6 2.6973 -2.6231 3.4204 10 6 2.8179 -3.8893 4.2968 11 6 2.4985 -5.0266 3.3035 12 6 1.4419 -4.3807 2.3856 13 6 1.9075 -6.2236 4.0380 14 7 1.7631 -7.3327 3.0789 15 6 0.5874 -8.0268 2.9726 16 1 -0.3461 -7.5508 3.2341 17 6 0.5955 -9.3419 2.5286 18 7 1.7173 -10.0302 2.5304 19 14 -0.9858 -10.1347 1.9283 20 1 -1.0826 -9.9913 0.4535 21 1 -0.9839 -11.5759 2.2864 22 1 -2.1480 -9.4673 2.5680 23 6 2.9232 -7.6702 2.2385 24 6 3.4282 -6.3887 1.5663 25 8 3.6550 -5.3900 2.5661 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.9703 -0.7121 -1.2326 33 1 1.6767 -0.2074 2.1393 34 1 3.1300 -0.7209 1.2496 35 1 3.6858 -2.3086 3.0855 36 1 2.2257 -1.8206 3.9877 37 1 2.0891 -3.8686 5.1070 38 1 3.8297 -3.9922 4.6889 39 1 1.4405 -4.8650 1.4091 40 1 0.4537 -4.4437 2.8412 41 1 2.5733 -6.5228 4.8475 42 1 0.9313 -5.9596 4.4443 43 1 1.7230 -10.9492 2.2198 44 1 3.7133 -8.0943 2.8583 45 1 2.6258 -8.3906 1.4763 46 1 4.3605 -6.5961 1.0409 47 1 2.6821 -6.0315 0.8565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972365801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:53 Heat of formation + Delta-G solvation = -96.854292 kcal Electronic energy + Delta-G solvation = -28010.181172 eV Core-core repulsion = 24194.094234 eV Total energy + Delta-G solvation = -3816.086938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43418 -39.21825 -37.45325 -36.03610 -34.42687 -32.80744 -32.00490 -31.03898 -29.21250 -28.89043 -27.46146 -27.35144 -25.44002 -23.24773 -23.18488 -21.18063 -20.71700 -19.30395 -18.77117 -17.33742 -16.81502 -16.58678 -16.28980 -15.69025 -15.09834 -14.87382 -14.67198 -14.60356 -14.28989 -14.09987 -13.81487 -13.57160 -13.09420 -12.97203 -12.76003 -12.55135 -12.33012 -12.31344 -12.11423 -11.97359 -11.82874 -11.50260 -11.37318 -11.25166 -11.07905 -10.88013 -10.83918 -10.73101 -10.48029 -10.22563 -10.19817 -9.96611 -9.52223 -9.42612 -9.07156 -8.52989 -8.37494 -6.75194 -5.84367 -3.28408 2.81409 3.10421 3.36638 3.44070 3.44733 4.11306 4.17135 4.40961 4.47692 4.54429 4.72449 4.75869 4.85100 5.02779 5.12090 5.22325 5.28395 5.30920 5.35092 5.39642 5.45833 5.57385 5.64523 5.73602 5.82491 5.84990 5.88103 5.95603 5.98233 6.03868 6.05434 6.27342 6.35351 6.39107 6.40718 6.49745 6.54211 6.67257 7.10038 7.49912 7.64818 7.70736 7.71907 7.90863 8.32578 8.39188 9.10562 9.73154 10.30189 11.23558 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.003729 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.391389 B = 7507.218431 C = 8196.543223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 C -0.178 4.178 4 O -0.542 6.542 5 C -0.165 4.165 6 C 0.525 3.475 7 O -0.519 6.519 8 N -0.617 5.617 9 C 0.106 3.894 10 C -0.118 4.118 11 C 0.096 3.904 12 C 0.094 3.906 13 C 0.131 3.869 14 N -0.593 5.593 15 C -0.254 4.254 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.141 3.859 24 C 0.035 3.965 25 O -0.374 6.374 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.368 0.632 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.255 0.745 44 H 0.028 0.972 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 20.766 1.095 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.103 3.897 3 C -0.235 4.235 4 O -0.346 6.346 5 C -0.205 4.205 6 C 0.313 3.687 7 O -0.395 6.395 8 N -0.352 5.352 9 C -0.017 4.017 10 C -0.156 4.156 11 C 0.053 3.947 12 C -0.028 4.028 13 C 0.004 3.996 14 N -0.317 5.317 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.203 1.203 23 C 0.015 3.985 24 C -0.043 4.043 25 O -0.293 6.293 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.214 0.786 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.446 20.436 0.414 20.729 hybrid contribution -0.196 -0.550 -0.088 0.591 sum 3.250 19.886 0.326 20.152 Atomic orbital electron populations 1.21994 0.92351 1.05343 1.01295 1.20903 0.95656 0.89448 0.83705 1.22517 1.01309 0.96750 1.02951 1.86726 1.25662 1.79398 1.42863 1.22454 1.02598 0.94116 1.01318 1.20049 0.80881 0.86897 0.80873 1.90698 1.37558 1.76643 1.34582 1.48642 1.51309 1.12841 1.22412 1.22009 0.94864 0.97794 0.87051 1.22556 1.03760 0.92271 0.97044 1.22324 0.86353 0.94559 0.91463 1.22697 0.97920 0.79929 1.02278 1.21305 0.98620 0.87790 0.91907 1.44110 1.11787 1.36170 1.39617 1.19178 0.84834 0.92810 1.41502 0.91370 1.25035 0.97022 0.95679 1.01741 1.70033 1.25774 1.09274 1.49528 0.86250 0.82971 0.78435 0.78986 1.21320 1.21715 1.20305 1.21423 0.89039 0.92888 0.95146 1.23415 1.00211 0.90411 0.90218 1.87611 1.31625 1.58966 1.51086 0.92142 0.92347 0.88882 0.92368 0.91486 0.91599 0.78624 0.88493 0.89016 0.91572 0.91781 0.89239 0.89111 0.89563 0.90891 0.95107 0.91745 0.93520 0.95384 0.88734 0.89984 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.52 37.16 0.32 -1.50 16 2 C 0.14 1.54 0.98 -90.62 -0.09 1.45 16 3 C -0.18 -1.32 8.81 37.16 0.33 -1.00 16 4 O -0.54 -6.98 11.88 -53.49 -0.64 -7.62 16 5 C -0.16 -1.68 4.14 -27.88 -0.12 -1.79 16 6 C 0.52 7.93 7.41 -10.99 -0.08 7.85 16 7 O -0.52 -10.01 13.23 -12.71 -0.17 -10.17 16 8 N -0.62 -9.18 3.33 -170.73 -0.57 -9.74 16 9 C 0.11 1.19 6.50 -2.95 -0.02 1.17 16 10 C -0.12 -1.48 6.12 -25.26 -0.15 -1.63 16 11 C 0.10 1.65 0.83 -89.64 -0.07 1.57 16 12 C 0.09 1.67 5.85 -2.86 -0.02 1.66 16 13 C 0.13 2.64 5.40 -3.91 -0.02 2.62 16 14 N -0.59 -14.60 2.98 -172.23 -0.51 -15.12 16 15 C -0.25 -6.86 9.66 -15.06 -0.15 -7.01 16 16 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 17 C 0.00 0.11 4.94 -17.43 -0.09 0.03 16 18 N -0.90 -25.89 11.18 55.49 0.62 -25.27 16 19 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.14 3.36 5.45 -3.53 -0.02 3.34 16 24 C 0.03 0.70 6.78 37.30 0.25 0.95 16 25 O -0.37 -7.14 10.28 -35.22 -0.36 -7.51 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.43 5.51 -51.93 -0.29 1.15 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.37 3.33 9.04 45.56 0.41 3.75 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.97 8.00 -51.93 -0.42 0.55 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.83 6.00 -51.93 -0.31 1.51 16 40 H 0.07 1.32 7.82 -51.93 -0.41 0.91 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.23 7.72 -51.93 -0.40 0.83 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.09 2.50 6.15 -51.93 -0.32 2.18 16 46 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.04 0.95 6.25 -51.93 -0.32 0.62 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -33.33 363.71 -8.20 -41.53 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.10 Total: 4.01 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 0.07 Total: 7.71 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.46 Total: -50.13 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -1.17 Total: -25.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.33 -8.20 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972365801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.328 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds