Wall clock time and date at job start Fri Apr 10 2020 18:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47168 * 2 1 4 4 O 1.42899 * 109.47271 * 239.99935 * 2 1 3 5 5 C 1.53008 * 109.47093 * 119.99851 * 2 1 3 6 6 C 1.50702 * 109.46893 * 59.99887 * 5 2 1 7 7 O 1.21283 * 120.00152 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99815 * 179.97438 * 6 5 2 9 9 C 1.47091 * 125.63235 * 0.04351 * 8 6 5 10 10 C 1.54461 * 107.30339 * 180.97386 * 9 8 6 11 11 C 1.54344 * 102.87120 * 21.47747 * 10 9 8 12 12 C 1.47575 * 125.63338 * 179.97438 * 8 6 5 13 13 C 1.52367 * 110.42285 * 207.62040 * 11 10 9 14 14 N 1.47334 * 108.39707 * 186.35387 * 13 11 10 15 15 C 1.36939 * 121.07766 * 229.21956 * 14 13 11 16 16 H 1.07999 * 119.99648 * 26.68204 * 15 14 13 17 17 C 1.38807 * 120.00269 * 206.68204 * 15 14 13 18 18 N 1.31618 * 119.99975 * 17.09514 * 17 15 14 19 19 Si 1.86802 * 119.99900 * 197.10094 * 17 15 14 20 20 H 1.48500 * 109.47016 * 94.15178 * 19 17 15 21 21 H 1.48502 * 109.46986 * 214.14972 * 19 17 15 22 22 H 1.48501 * 109.47159 * 334.15033 * 19 17 15 23 23 C 1.47170 * 117.84653 * 49.19899 * 14 13 11 24 24 C 1.53276 * 108.56503 * 308.77738 * 23 14 13 25 25 O 1.41886 * 110.76184 * 83.68715 * 11 10 9 26 26 H 1.09006 * 109.47391 * 300.00138 * 1 2 3 27 27 H 1.08999 * 109.46994 * 59.99861 * 1 2 3 28 28 H 1.09000 * 109.47190 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47267 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47276 * 299.99966 * 3 2 1 31 31 H 1.08998 * 109.47407 * 59.99779 * 3 2 1 32 32 H 0.96698 * 113.99867 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.46935 * 299.99886 * 5 2 1 34 34 H 1.08998 * 109.47119 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.87844 * 300.40088 * 9 8 6 36 36 H 1.09006 * 109.87908 * 61.39473 * 9 8 6 37 37 H 1.09000 * 110.72999 * 263.13503 * 10 9 8 38 38 H 1.09001 * 110.73601 * 139.82534 * 10 9 8 39 39 H 1.09003 * 110.37709 * 37.89319 * 12 8 6 40 40 H 1.08998 * 110.47675 * 275.58814 * 12 8 6 41 41 H 1.09005 * 109.67738 * 306.07856 * 13 11 10 42 42 H 1.08996 * 109.68199 * 66.58556 * 13 11 10 43 43 H 0.97004 * 119.99869 * 180.02562 * 18 17 15 44 44 H 1.09010 * 109.62602 * 68.50019 * 23 14 13 45 45 H 1.09005 * 109.62099 * 189.05171 * 23 14 13 46 46 H 1.09003 * 109.51547 * 172.90979 * 24 23 14 47 47 H 1.09005 * 109.51022 * 293.00384 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2493 6 6 1.5376 -2.1421 1.2493 7 8 0.8407 -2.5389 0.3395 8 7 1.8636 -2.9721 2.2599 9 6 2.6973 -2.6231 3.4204 10 6 2.8179 -3.8893 4.2968 11 6 2.4985 -5.0266 3.3035 12 6 1.4419 -4.3807 2.3856 13 6 1.9075 -6.2236 4.0380 14 7 1.7631 -7.3327 3.0789 15 6 0.5874 -8.0268 2.9726 16 1 -0.3461 -7.5508 3.2341 17 6 0.5955 -9.3419 2.5286 18 7 1.7173 -10.0302 2.5304 19 14 -0.9858 -10.1347 1.9283 20 1 -1.0826 -9.9913 0.4535 21 1 -0.9839 -11.5759 2.2864 22 1 -2.1480 -9.4673 2.5680 23 6 2.9232 -7.6702 2.2385 24 6 3.4282 -6.3887 1.5663 25 8 3.6550 -5.3900 2.5661 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.9703 -0.7121 -1.2326 33 1 1.6767 -0.2074 2.1393 34 1 3.1300 -0.7209 1.2496 35 1 3.6858 -2.3086 3.0855 36 1 2.2257 -1.8206 3.9877 37 1 2.0891 -3.8686 5.1070 38 1 3.8297 -3.9922 4.6889 39 1 1.4405 -4.8650 1.4091 40 1 0.4537 -4.4437 2.8412 41 1 2.5733 -6.5228 4.8475 42 1 0.9313 -5.9596 4.4443 43 1 1.7230 -10.9492 2.2198 44 1 3.7133 -8.0943 2.8583 45 1 2.6258 -8.3906 1.4763 46 1 4.3605 -6.5961 1.0409 47 1 2.6821 -6.0315 0.8565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972365801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:52 Heat of formation + Delta-G solvation = -121.396180 kcal Electronic energy + Delta-G solvation = -28011.245388 eV Core-core repulsion = 24194.094234 eV Total energy + Delta-G solvation = -3817.151154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67124 -40.45230 -38.52663 -37.37792 -36.23487 -33.76564 -33.47555 -32.81491 -30.41323 -30.11471 -28.89783 -28.16327 -27.03451 -24.98510 -24.51861 -22.68408 -21.60526 -20.52922 -20.17808 -18.88875 -18.35091 -17.68100 -17.43125 -17.00958 -16.75431 -16.19776 -15.90139 -15.79346 -15.60289 -15.36015 -15.18339 -15.05345 -14.72683 -14.55604 -13.86551 -13.68614 -13.34569 -13.17927 -13.12520 -13.08455 -12.97923 -12.87886 -12.71839 -12.64799 -12.50873 -12.39635 -12.26119 -12.15228 -12.09859 -11.85604 -11.64869 -11.16809 -11.05579 -10.84888 -10.60570 -10.45947 -9.55675 -8.75307 -7.93659 -5.40145 1.41808 1.45024 1.52643 1.71833 2.00976 2.43870 2.74034 3.20786 3.31445 3.42130 3.55340 3.67775 3.74201 3.86610 3.97146 4.06390 4.22379 4.29324 4.31638 4.33064 4.49858 4.57327 4.60578 4.62791 4.68350 4.75866 4.77913 4.78915 4.86686 4.91900 4.92971 5.03728 5.07266 5.10586 5.16313 5.26023 5.26310 5.34947 5.49203 5.50416 5.57789 6.26342 6.32762 6.62998 6.96780 7.03605 7.28303 7.71853 8.25764 9.12028 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.003729 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.391389 B = 7507.218431 C = 8196.543223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 C -0.167 4.167 4 O -0.575 6.575 5 C -0.152 4.152 6 C 0.514 3.486 7 O -0.573 6.573 8 N -0.619 5.619 9 C 0.104 3.896 10 C -0.109 4.109 11 C 0.094 3.906 12 C 0.100 3.900 13 C 0.128 3.872 14 N -0.612 5.612 15 C -0.262 4.262 16 H 0.068 0.932 17 C -0.047 4.047 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.149 3.851 24 C 0.051 3.949 25 O -0.371 6.371 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.381 0.619 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.251 0.749 44 H 0.008 0.992 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 24.173 2.728 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.225 4.225 4 O -0.382 6.382 5 C -0.191 4.191 6 C 0.305 3.695 7 O -0.452 6.452 8 N -0.353 5.353 9 C -0.017 4.017 10 C -0.147 4.147 11 C 0.052 3.948 12 C -0.024 4.024 13 C 0.002 3.998 14 N -0.337 5.337 15 C -0.392 4.392 16 H 0.086 0.914 17 C -0.243 4.243 18 N -0.578 5.578 19 Si 0.792 3.208 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.192 1.192 23 C 0.023 3.977 24 C -0.027 4.027 25 O -0.290 6.290 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.229 0.771 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.443 23.894 2.088 24.393 hybrid contribution -0.531 -1.599 -0.572 1.779 sum 3.912 22.296 1.516 22.687 Atomic orbital electron populations 1.22000 0.94025 1.02864 1.02335 1.21089 0.94627 0.91376 0.83296 1.22409 1.02415 0.94017 1.03621 1.86694 1.27094 1.80160 1.44232 1.22494 1.04071 0.90222 1.02331 1.21079 0.79924 0.88664 0.79830 1.90694 1.39922 1.77939 1.36664 1.48772 1.51573 1.11241 1.23719 1.22304 0.95685 0.98010 0.85712 1.22660 1.05397 0.90211 0.96456 1.22395 0.85703 0.94712 0.92035 1.22359 0.97904 0.82252 0.99840 1.21498 0.99360 0.87463 0.91480 1.44340 1.11265 1.37025 1.41022 1.19468 0.85886 0.93044 1.40762 0.91401 1.25738 0.99747 0.96340 1.02449 1.70164 1.27530 1.09296 1.50805 0.85306 0.80080 0.77406 0.78012 1.21728 1.21726 1.19198 1.21210 0.88340 0.94069 0.94105 1.23148 1.00768 0.88764 0.89993 1.87617 1.32460 1.58128 1.50757 0.89693 0.92768 0.92982 0.90518 0.92134 0.89641 0.77100 0.85214 0.86233 0.89620 0.87739 0.87130 0.87493 0.93936 0.91879 0.95079 0.91054 0.93941 0.97361 0.91930 0.87535 0.95097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.52 71.98 0.61 -2.95 16 2 C 0.14 2.60 0.98 -10.79 -0.01 2.59 16 3 C -0.17 -1.85 8.81 71.98 0.63 -1.21 16 4 O -0.57 -14.40 11.88 -131.52 -1.56 -15.96 16 5 C -0.15 -2.50 4.14 29.85 0.12 -2.38 16 6 C 0.51 14.82 7.41 87.66 0.65 15.47 16 7 O -0.57 -22.75 13.23 14.42 0.19 -22.56 16 8 N -0.62 -17.12 3.33 -812.46 -2.71 -19.83 16 9 C 0.10 1.84 6.50 86.76 0.56 2.41 16 10 C -0.11 -2.31 6.12 31.55 0.19 -2.11 16 11 C 0.09 3.12 0.83 -10.16 -0.01 3.11 16 12 C 0.10 3.58 5.85 86.56 0.51 4.08 16 13 C 0.13 5.13 5.40 86.01 0.46 5.59 16 14 N -0.61 -30.99 2.98 -698.83 -2.08 -33.08 16 15 C -0.26 -14.53 9.66 84.03 0.81 -13.72 16 16 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 17 C -0.05 -2.66 4.94 84.86 0.42 -2.24 16 18 N -0.93 -55.42 11.18 21.65 0.24 -55.18 16 19 Si 0.96 45.85 29.59 68.60 2.03 47.88 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.15 7.37 5.45 86.34 0.47 7.84 16 24 C 0.05 2.08 6.78 72.07 0.49 2.57 16 25 O -0.37 -13.77 10.28 -148.95 -1.53 -15.30 16 26 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.65 5.51 -2.39 -0.01 1.64 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.38 6.42 9.04 -74.06 -0.67 5.75 16 33 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.11 1.90 8.00 -2.39 -0.02 1.88 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.04 1.89 6.00 -2.39 -0.01 1.87 16 40 H 0.06 2.33 7.82 -2.39 -0.02 2.31 16 41 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.07 2.71 7.72 -2.39 -0.02 2.69 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 45 H 0.06 3.49 6.15 -2.38 -0.01 3.47 16 46 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 47 H 0.03 1.36 6.25 -2.38 -0.01 1.34 16 Total: -1.00 -78.16 363.71 0.79 -77.38 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.29 Total: 17.59 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 5.92 Total: 19.05 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -4.55 Total: -108.08 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -2.90 Total: -53.82 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.16 0.79 -77.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972365801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.020 kcal (2) G-P(sol) polarization free energy of solvation -78.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds