Wall clock time and date at job start Fri Apr 10 2020 18:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.64276 * 2 1 4 4 C 1.54329 * 110.71652 * 236.66432 * 2 1 3 5 5 N 1.47023 * 107.27125 * 219.44409 * 4 2 1 6 6 C 1.36935 * 125.64784 * 178.98331 * 5 4 2 7 7 H 1.07998 * 120.00046 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00106 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46960 * 59.99574 * 10 8 6 12 12 H 1.48490 * 109.47275 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47162 * 300.00109 * 10 8 6 14 14 C 1.47534 * 108.71510 * 358.94448 * 5 4 2 15 15 C 1.54909 * 104.78078 * 24.11902 * 14 5 4 16 16 H 1.09000 * 111.00275 * 204.90215 * 15 14 5 17 17 N 1.46505 * 111.00559 * 81.08724 * 15 14 5 18 18 C 1.34780 * 119.99828 * 89.57634 * 17 15 14 19 19 O 1.21283 * 119.99723 * 0.02562 * 18 17 15 20 20 C 1.50695 * 120.00031 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47112 * 180.02562 * 20 18 17 22 22 O 1.42969 * 109.47196 * 294.99781 * 21 20 18 23 23 C 1.43091 * 113.76642 * 181.20284 * 22 21 20 24 24 C 1.53261 * 108.94081 * 57.97810 * 23 22 21 25 25 C 1.53257 * 108.84388 * 305.46981 * 24 23 22 26 26 O 1.42975 * 109.46915 * 175.00242 * 21 20 18 27 27 H 1.09003 * 109.46567 * 296.85434 * 1 2 3 28 28 H 1.08996 * 109.47316 * 56.85334 * 1 2 3 29 29 H 1.08997 * 109.47379 * 176.85696 * 1 2 3 30 30 H 1.08996 * 109.47059 * 183.14069 * 3 2 1 31 31 H 1.08994 * 109.47352 * 303.14411 * 3 2 1 32 32 H 1.09000 * 109.47062 * 63.14577 * 3 2 1 33 33 H 1.08996 * 109.88134 * 338.86411 * 4 2 1 34 34 H 1.09005 * 109.87779 * 100.02882 * 4 2 1 35 35 H 0.96995 * 120.00173 * 180.02562 * 9 8 6 36 36 H 1.08999 * 110.36969 * 265.30990 * 14 5 4 37 37 H 1.09000 * 110.40553 * 142.95156 * 14 5 4 38 38 H 0.96995 * 119.99762 * 269.58584 * 17 15 14 39 39 H 1.09001 * 109.46977 * 60.00309 * 20 18 17 40 40 H 1.09004 * 109.46991 * 300.00695 * 20 18 17 41 41 H 1.09000 * 109.47140 * 55.00317 * 21 20 18 42 42 H 1.08997 * 109.56566 * 298.13788 * 23 22 21 43 43 H 1.09001 * 109.55668 * 177.80969 * 23 22 21 44 44 H 1.09002 * 109.57232 * 185.66718 * 24 23 22 45 45 H 1.09000 * 109.58027 * 65.28052 * 24 23 22 46 46 H 1.09000 * 109.55979 * 294.68668 * 25 24 23 47 47 H 1.09001 * 109.56236 * 174.36699 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2445 -1.5521 -0.7365 6 6 4.0042 -2.3995 -1.4979 7 1 3.7610 -2.5551 -2.5386 8 6 5.0864 -3.0594 -0.9319 9 7 5.3825 -2.8702 0.3365 10 14 6.1224 -4.2159 -1.9703 11 1 6.7144 -3.4650 -3.1065 12 1 7.2093 -4.7900 -1.1371 13 1 5.2675 -5.3118 -2.4932 14 6 3.4637 -1.2488 0.6906 15 6 2.0790 -0.7935 1.2151 16 1 2.1844 -0.1486 2.0875 17 7 1.2271 -1.9463 1.5176 18 6 1.2505 -2.4973 2.7475 19 8 1.9766 -2.0383 3.6037 20 6 0.3747 -3.6834 3.0586 21 6 0.5909 -4.1098 4.5120 22 8 1.9321 -4.5763 4.6773 23 6 2.2270 -5.0259 6.0033 24 6 1.2539 -6.1501 6.3754 25 6 -0.1807 -5.6481 6.1789 26 8 -0.3227 -5.1590 4.8417 27 1 -0.3632 0.4642 0.9169 28 1 -0.3634 0.5619 -0.8604 29 1 -0.3634 -1.0261 -0.0563 30 1 3.1577 1.4100 -0.0563 31 1 1.6717 1.9698 -0.8604 32 1 1.7631 1.9354 0.9168 33 1 1.3129 -1.4784 -1.5751 34 1 2.3741 -0.1057 -1.9976 35 1 6.1389 -3.3310 0.7320 36 1 4.1933 -0.4465 0.8002 37 1 3.7962 -2.1405 1.2219 38 1 0.6463 -2.3131 0.8329 39 1 0.6322 -4.5091 2.3952 40 1 -0.6707 -3.4117 2.9116 41 1 0.4187 -3.2580 5.1699 42 1 2.1130 -4.1982 6.7032 43 1 3.2497 -5.4009 6.0426 44 1 1.4027 -6.4317 7.4178 45 1 1.4300 -7.0131 5.7332 46 1 -0.3859 -4.8439 6.8854 47 1 -0.8800 -6.4679 6.3437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974506530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:02 Heat of formation + Delta-G solvation = -105.406944 kcal Electronic energy + Delta-G solvation = -27833.392484 eV Core-core repulsion = 24016.934676 eV Total energy + Delta-G solvation = -3816.457809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12687 -39.38098 -37.75478 -35.59713 -33.75284 -33.16974 -32.91735 -30.66205 -30.17960 -27.95779 -26.72610 -26.00434 -25.56113 -24.01000 -22.86808 -21.21422 -20.43398 -19.65372 -18.60945 -17.54894 -16.73207 -16.54308 -16.49151 -15.73998 -15.69330 -14.93412 -14.75902 -14.58317 -14.25612 -13.84625 -13.74734 -13.33170 -13.28271 -13.17108 -12.84285 -12.61591 -12.26740 -11.93781 -11.78768 -11.67795 -11.58907 -11.23583 -11.14362 -11.11620 -11.07878 -10.93016 -10.72058 -10.36118 -10.17763 -10.01862 -9.90005 -9.75373 -9.63728 -9.61377 -9.30132 -8.61772 -8.26167 -6.75187 -5.56497 -2.99876 3.15020 3.26618 3.44277 3.48292 3.50608 3.74922 4.03699 4.53948 4.61540 4.63598 4.86022 4.97134 5.02447 5.03251 5.23301 5.28392 5.30915 5.32560 5.38189 5.50134 5.58016 5.64402 5.68235 5.77367 5.81160 5.84888 5.91470 5.95234 6.07079 6.14078 6.22729 6.30669 6.46168 6.52720 6.65855 6.74653 6.82144 6.83458 7.06284 7.24650 7.55874 7.67841 7.95415 8.11176 8.46454 8.80318 9.28049 9.89829 10.54068 11.45830 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.004622 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.724042 B = 6056.485442 C = 7778.224344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.228 4.228 7 H 0.075 0.925 8 C -0.007 4.007 9 N -0.915 5.915 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.126 3.874 16 H 0.085 0.915 17 N -0.702 5.702 18 C 0.521 3.479 19 O -0.535 6.535 20 C -0.129 4.129 21 C 0.266 3.734 22 O -0.369 6.369 23 C 0.058 3.942 24 C -0.194 4.194 25 C 0.060 3.940 26 O -0.398 6.398 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.253 0.747 36 H 0.019 0.981 37 H 0.114 0.886 38 H 0.396 0.604 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.052 0.948 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.701 -0.492 9.506 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.018 3.982 5 N -0.327 5.327 6 C -0.356 4.356 7 H 0.093 0.907 8 C -0.203 4.203 9 N -0.563 5.563 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.020 3.980 16 H 0.103 0.897 17 N -0.353 5.353 18 C 0.306 3.694 19 O -0.412 6.412 20 C -0.169 4.169 21 C 0.171 3.829 22 O -0.289 6.289 23 C -0.019 4.019 24 C -0.232 4.232 25 C -0.016 4.016 26 O -0.319 6.319 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.132 0.868 38 H 0.230 0.770 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.965 -0.358 9.857 16.291 hybrid contribution 0.383 -0.794 -0.541 1.034 sum -12.582 -1.152 9.316 15.698 Atomic orbital electron populations 1.21715 0.94670 1.01215 1.01185 1.21846 0.94813 0.95699 0.96547 1.21680 1.01929 0.94160 1.00796 1.21396 0.90313 0.92917 0.93609 1.44475 1.30619 1.50187 1.07425 1.18967 1.06540 1.17218 0.92860 0.90693 1.24785 0.98754 1.00518 0.96291 1.69795 1.29888 1.45880 1.10729 0.86208 0.79892 0.80721 0.78961 1.21311 1.21635 1.21251 1.22330 0.89241 1.01337 0.85037 1.22484 0.93312 0.86126 0.96038 0.89699 1.45725 1.44278 1.33038 1.12214 1.19927 0.82960 0.83813 0.82687 1.90700 1.40781 1.62704 1.47035 1.21451 1.01354 0.98694 0.95383 1.22861 0.76834 0.87436 0.95778 1.88288 1.28845 1.82437 1.29298 1.22601 0.99531 0.95214 0.84549 1.22822 0.96697 1.00586 1.03085 1.22602 0.96545 0.98844 0.83648 1.88050 1.57698 1.55449 1.30691 0.92884 0.92812 0.92877 0.91787 0.92763 0.93115 0.96117 0.95984 0.93637 0.96360 0.86828 0.76954 0.87257 0.87224 0.91963 0.92930 0.88333 0.89931 0.89992 0.92938 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.07 37.16 0.30 -1.40 16 2 C -0.09 -1.46 0.80 -152.67 -0.12 -1.58 16 3 C -0.13 -1.95 8.41 37.15 0.31 -1.64 16 4 C 0.14 2.90 6.42 -3.06 -0.02 2.88 16 5 N -0.60 -15.18 3.40 -169.98 -0.58 -15.76 16 6 C -0.23 -6.36 10.27 -15.06 -0.15 -6.51 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.60 10.09 55.49 0.56 -27.04 16 10 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.15 3.65 5.28 -2.47 -0.01 3.63 16 15 C 0.13 2.45 2.61 -65.78 -0.17 2.28 16 16 H 0.09 1.69 7.53 -51.93 -0.39 1.30 16 17 N -0.70 -12.36 4.62 -51.73 -0.24 -12.60 16 18 C 0.52 9.50 7.71 -10.99 -0.08 9.41 16 19 O -0.54 -11.71 15.11 -8.86 -0.13 -11.84 16 20 C -0.13 -1.87 5.78 -27.89 -0.16 -2.03 16 21 C 0.27 4.01 2.80 37.16 0.10 4.12 16 22 O -0.37 -6.43 9.77 -64.76 -0.63 -7.06 16 23 C 0.06 0.75 6.96 37.29 0.26 1.01 16 24 C -0.19 -1.95 6.35 -26.46 -0.17 -2.12 16 25 C 0.06 0.61 6.96 37.29 0.26 0.87 16 26 O -0.40 -5.38 10.54 -59.03 -0.62 -6.00 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 6.42 -51.93 -0.33 0.32 16 30 H 0.06 1.11 7.59 -51.93 -0.39 0.72 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 34 H 0.02 0.45 7.85 -51.93 -0.41 0.05 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.02 0.50 7.81 -51.93 -0.41 0.09 16 37 H 0.11 3.33 5.88 -51.93 -0.31 3.02 16 38 H 0.40 6.19 7.03 -40.82 -0.29 5.90 16 39 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.93 7.96 -51.93 -0.41 0.51 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -34.10 367.97 -8.84 -42.94 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.96 Total: 5.72 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 0.24 Total: 8.60 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.26 Total: -55.40 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.39 Total: -24.91 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.10 -8.84 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974506530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.468 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds