Wall clock time and date at job start Fri Apr 10 2020 18:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.64276 * 2 1 4 4 C 1.54329 * 110.71652 * 236.66432 * 2 1 3 5 5 N 1.47023 * 107.27125 * 219.44409 * 4 2 1 6 6 C 1.36935 * 125.64784 * 178.98331 * 5 4 2 7 7 H 1.07998 * 120.00046 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00106 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46960 * 59.99574 * 10 8 6 12 12 H 1.48490 * 109.47275 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47162 * 300.00109 * 10 8 6 14 14 C 1.47534 * 108.71510 * 358.94448 * 5 4 2 15 15 C 1.54909 * 104.78078 * 24.11902 * 14 5 4 16 16 H 1.09000 * 111.00275 * 204.90215 * 15 14 5 17 17 N 1.46505 * 111.00559 * 81.08724 * 15 14 5 18 18 C 1.34780 * 119.99828 * 89.57634 * 17 15 14 19 19 O 1.21283 * 119.99723 * 0.02562 * 18 17 15 20 20 C 1.50695 * 120.00031 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47112 * 180.02562 * 20 18 17 22 22 O 1.42969 * 109.47196 * 294.99781 * 21 20 18 23 23 C 1.43091 * 113.76642 * 181.20284 * 22 21 20 24 24 C 1.53261 * 108.94081 * 57.97810 * 23 22 21 25 25 C 1.53257 * 108.84388 * 305.46981 * 24 23 22 26 26 O 1.42975 * 109.46915 * 175.00242 * 21 20 18 27 27 H 1.09003 * 109.46567 * 296.85434 * 1 2 3 28 28 H 1.08996 * 109.47316 * 56.85334 * 1 2 3 29 29 H 1.08997 * 109.47379 * 176.85696 * 1 2 3 30 30 H 1.08996 * 109.47059 * 183.14069 * 3 2 1 31 31 H 1.08994 * 109.47352 * 303.14411 * 3 2 1 32 32 H 1.09000 * 109.47062 * 63.14577 * 3 2 1 33 33 H 1.08996 * 109.88134 * 338.86411 * 4 2 1 34 34 H 1.09005 * 109.87779 * 100.02882 * 4 2 1 35 35 H 0.96995 * 120.00173 * 180.02562 * 9 8 6 36 36 H 1.08999 * 110.36969 * 265.30990 * 14 5 4 37 37 H 1.09000 * 110.40553 * 142.95156 * 14 5 4 38 38 H 0.96995 * 119.99762 * 269.58584 * 17 15 14 39 39 H 1.09001 * 109.46977 * 60.00309 * 20 18 17 40 40 H 1.09004 * 109.46991 * 300.00695 * 20 18 17 41 41 H 1.09000 * 109.47140 * 55.00317 * 21 20 18 42 42 H 1.08997 * 109.56566 * 298.13788 * 23 22 21 43 43 H 1.09001 * 109.55668 * 177.80969 * 23 22 21 44 44 H 1.09002 * 109.57232 * 185.66718 * 24 23 22 45 45 H 1.09000 * 109.58027 * 65.28052 * 24 23 22 46 46 H 1.09000 * 109.55979 * 294.68668 * 25 24 23 47 47 H 1.09001 * 109.56236 * 174.36699 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2445 -1.5521 -0.7365 6 6 4.0042 -2.3995 -1.4979 7 1 3.7610 -2.5551 -2.5386 8 6 5.0864 -3.0594 -0.9319 9 7 5.3825 -2.8702 0.3365 10 14 6.1224 -4.2159 -1.9703 11 1 6.7144 -3.4650 -3.1065 12 1 7.2093 -4.7900 -1.1371 13 1 5.2675 -5.3118 -2.4932 14 6 3.4637 -1.2488 0.6906 15 6 2.0790 -0.7935 1.2151 16 1 2.1844 -0.1486 2.0875 17 7 1.2271 -1.9463 1.5176 18 6 1.2505 -2.4973 2.7475 19 8 1.9766 -2.0383 3.6037 20 6 0.3747 -3.6834 3.0586 21 6 0.5909 -4.1098 4.5120 22 8 1.9321 -4.5763 4.6773 23 6 2.2270 -5.0259 6.0033 24 6 1.2539 -6.1501 6.3754 25 6 -0.1807 -5.6481 6.1789 26 8 -0.3227 -5.1590 4.8417 27 1 -0.3632 0.4642 0.9169 28 1 -0.3634 0.5619 -0.8604 29 1 -0.3634 -1.0261 -0.0563 30 1 3.1577 1.4100 -0.0563 31 1 1.6717 1.9698 -0.8604 32 1 1.7631 1.9354 0.9168 33 1 1.3129 -1.4784 -1.5751 34 1 2.3741 -0.1057 -1.9976 35 1 6.1389 -3.3310 0.7320 36 1 4.1933 -0.4465 0.8002 37 1 3.7962 -2.1405 1.2219 38 1 0.6463 -2.3131 0.8329 39 1 0.6322 -4.5091 2.3952 40 1 -0.6707 -3.4117 2.9116 41 1 0.4187 -3.2580 5.1699 42 1 2.1130 -4.1982 6.7032 43 1 3.2497 -5.4009 6.0426 44 1 1.4027 -6.4317 7.4178 45 1 1.4300 -7.0131 5.7332 46 1 -0.3859 -4.8439 6.8854 47 1 -0.8800 -6.4679 6.3437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974506530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:01 Heat of formation + Delta-G solvation = -129.092975 kcal Electronic energy + Delta-G solvation = -27834.419588 eV Core-core repulsion = 24016.934676 eV Total energy + Delta-G solvation = -3817.484912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39104 -40.71166 -39.28358 -36.67614 -35.64019 -34.47820 -34.13069 -32.58718 -31.38284 -29.59026 -27.98768 -27.37897 -26.92549 -25.47215 -24.33442 -22.31501 -22.04221 -21.21704 -20.05760 -18.72209 -18.66582 -17.82839 -17.69326 -17.11292 -16.98053 -16.46800 -15.89956 -15.80725 -15.70350 -15.57671 -15.25207 -14.72659 -14.61761 -14.28236 -14.14241 -13.86820 -13.72083 -13.62248 -13.11995 -13.02114 -12.97791 -12.75868 -12.59118 -12.53619 -12.42606 -12.14571 -12.11155 -12.06755 -11.76320 -11.73034 -11.41267 -11.32791 -11.00388 -10.86033 -10.71415 -10.65387 -9.88725 -8.82812 -7.73632 -5.19016 1.44011 1.47461 1.54076 1.72652 2.06077 2.49900 2.69651 2.84233 3.35579 3.60305 3.69378 3.73658 3.78002 3.78661 3.85884 4.00383 4.10930 4.15316 4.26547 4.40353 4.43733 4.44815 4.49900 4.56718 4.70735 4.78570 4.81913 4.84870 4.86478 4.91403 4.95237 5.07203 5.10481 5.13876 5.23312 5.34131 5.36449 5.49929 5.56645 5.74056 5.86206 5.87213 6.19286 6.33779 6.67702 7.10739 7.38201 7.81380 8.45106 9.26342 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.004622 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.724042 B = 6056.485442 C = 7778.224344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.138 3.862 5 N -0.618 5.618 6 C -0.235 4.235 7 H 0.084 0.916 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.976 3.024 11 H -0.277 1.277 12 H -0.300 1.300 13 H -0.275 1.275 14 C 0.154 3.846 15 C 0.138 3.862 16 H 0.079 0.921 17 N -0.694 5.694 18 C 0.516 3.484 19 O -0.578 6.578 20 C -0.120 4.120 21 C 0.266 3.734 22 O -0.412 6.412 23 C 0.045 3.955 24 C -0.184 4.184 25 C 0.050 3.950 26 O -0.406 6.406 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.024 0.976 35 H 0.242 0.758 36 H -0.018 1.018 37 H 0.067 0.933 38 H 0.408 0.592 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.790 -0.669 9.023 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.184 4.184 4 C 0.013 3.987 5 N -0.344 5.344 6 C -0.364 4.364 7 H 0.102 0.898 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.805 3.195 11 H -0.203 1.203 12 H -0.227 1.227 13 H -0.200 1.200 14 C 0.028 3.972 15 C 0.032 3.968 16 H 0.097 0.903 17 N -0.345 5.345 18 C 0.303 3.697 19 O -0.457 6.457 20 C -0.160 4.160 21 C 0.171 3.829 22 O -0.333 6.333 23 C -0.031 4.031 24 C -0.222 4.222 25 C -0.026 4.026 26 O -0.327 6.327 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.051 0.949 36 H -0.001 1.001 37 H 0.085 0.915 38 H 0.245 0.755 39 H 0.124 0.876 40 H 0.169 0.831 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.115 -0.535 9.336 18.632 hybrid contribution 1.369 -0.719 -0.373 1.591 sum -14.747 -1.254 8.963 17.302 Atomic orbital electron populations 1.21689 0.90852 1.02495 1.03054 1.21829 0.97622 0.95270 0.92740 1.21688 0.99908 0.93780 1.03019 1.21653 0.88832 0.93063 0.95133 1.44708 1.31792 1.50396 1.07513 1.19412 1.06599 1.16894 0.93507 0.89787 1.25629 1.00430 1.02637 0.97357 1.70125 1.30053 1.47096 1.12525 0.85178 0.78029 0.78917 0.77380 1.20285 1.22655 1.20045 1.21960 0.91917 0.98071 0.85265 1.22132 0.90948 0.86867 0.96864 0.90299 1.45638 1.43735 1.32584 1.12564 1.20630 0.82652 0.84229 0.82191 1.90678 1.42590 1.64120 1.48340 1.21464 1.02697 0.96527 0.95310 1.22816 0.76395 0.87825 0.95865 1.88233 1.30419 1.83018 1.31663 1.22850 1.00514 0.96581 0.83203 1.22768 0.95910 0.98816 1.04724 1.22947 0.97034 1.00170 0.82408 1.88016 1.57002 1.54971 1.32714 0.91395 0.90531 0.92009 0.95017 0.90178 0.91192 0.94570 0.95821 0.94874 1.00054 0.91499 0.75495 0.87561 0.83064 0.92161 0.92334 0.88575 0.86751 0.90922 0.91473 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 8.07 71.98 0.58 -2.13 16 2 C -0.07 -2.31 0.80 -50.99 -0.04 -2.35 16 3 C -0.13 -3.65 8.41 71.98 0.61 -3.04 16 4 C 0.14 5.38 6.42 86.73 0.56 5.94 16 5 N -0.62 -31.82 3.40 -691.70 -2.35 -34.17 16 6 C -0.24 -13.33 10.27 84.04 0.86 -12.46 16 7 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 8 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 9 N -0.95 -60.25 10.09 21.65 0.22 -60.03 16 10 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 13 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 14 C 0.15 8.09 5.28 86.83 0.46 8.55 16 15 C 0.14 5.42 2.61 46.38 0.12 5.55 16 16 H 0.08 3.21 7.53 -2.39 -0.02 3.19 16 17 N -0.69 -24.07 4.62 -435.95 -2.01 -26.09 16 18 C 0.52 18.88 7.71 87.65 0.68 19.56 16 19 O -0.58 -26.16 15.11 10.74 0.16 -26.00 16 20 C -0.12 -3.38 5.78 29.85 0.17 -3.21 16 21 C 0.27 7.90 2.80 71.98 0.20 8.10 16 22 O -0.41 -14.77 9.77 -120.75 -1.18 -15.95 16 23 C 0.04 1.17 6.96 72.07 0.50 1.67 16 24 C -0.18 -3.44 6.35 30.77 0.20 -3.25 16 25 C 0.05 0.90 6.96 72.07 0.50 1.40 16 26 O -0.41 -10.29 10.54 -126.22 -1.33 -11.62 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.27 6.42 -2.39 -0.02 1.25 16 30 H 0.03 1.10 7.59 -2.39 -0.02 1.08 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.32 7.76 -2.39 -0.02 1.30 16 34 H 0.02 0.93 7.85 -2.38 -0.02 0.91 16 35 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 36 H -0.02 -1.06 7.81 -2.39 -0.02 -1.08 16 37 H 0.07 4.18 5.88 -2.39 -0.01 4.17 16 38 H 0.41 12.01 7.03 -92.71 -0.65 11.36 16 39 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.06 1.78 7.96 -2.39 -0.02 1.76 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -79.39 367.97 1.69 -77.69 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.30 Total: 25.99 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 5.86 Total: 20.79 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -4.15 Total: -120.29 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.35 Total: -53.57 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -79.39 1.69 -77.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974506530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.398 kcal (2) G-P(sol) polarization free energy of solvation -79.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds