Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99479 * 2 1 4 4 H 1.48506 * 109.47550 * 269.99988 * 3 2 1 5 5 H 1.48503 * 109.47589 * 30.00235 * 3 2 1 6 6 H 1.48501 * 109.47103 * 149.99909 * 3 2 1 7 7 C 1.38807 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99857 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47314 * 155.00239 * 10 9 7 12 12 C 1.52998 * 109.47156 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46920 * 299.99553 * 12 11 10 14 14 N 1.46502 * 109.47236 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00192 * 155.00008 * 14 13 12 16 16 O 1.21286 * 119.99644 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00101 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.46922 * 180.02562 * 17 15 14 19 19 O 1.42967 * 109.46879 * 185.00049 * 18 17 15 20 20 C 1.43095 * 113.77014 * 181.20342 * 19 18 17 21 21 C 1.53266 * 108.94092 * 57.97057 * 20 19 18 22 22 C 1.53256 * 108.84277 * 305.47453 * 21 20 19 23 23 O 1.42958 * 109.47368 * 65.00158 * 18 17 15 24 24 C 1.53000 * 109.47215 * 60.00221 * 13 12 11 25 25 C 1.53001 * 109.46911 * 274.99884 * 10 9 7 26 26 H 0.96991 * 120.00572 * 359.97438 * 1 2 3 27 27 H 0.96992 * 119.99863 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47422 * 34.99709 * 10 9 7 29 29 H 1.08997 * 109.46920 * 59.99559 * 11 10 9 30 30 H 1.09003 * 109.46458 * 299.99801 * 11 10 9 31 31 H 1.08997 * 109.46681 * 179.97438 * 12 11 10 32 32 H 1.08991 * 109.47237 * 59.99731 * 12 11 10 33 33 H 1.09008 * 109.47346 * 300.00154 * 13 12 11 34 34 H 0.97000 * 119.99834 * 335.00193 * 14 13 12 35 35 H 1.08996 * 109.46772 * 60.00034 * 17 15 14 36 36 H 1.08992 * 109.46831 * 300.00138 * 17 15 14 37 37 H 1.09004 * 109.47413 * 304.99650 * 18 17 15 38 38 H 1.08999 * 109.55643 * 177.80695 * 20 19 18 39 39 H 1.08999 * 109.55852 * 298.02362 * 20 19 18 40 40 H 1.08997 * 109.57081 * 65.28194 * 21 20 19 41 41 H 1.08998 * 109.57218 * 185.53611 * 21 20 19 42 42 H 1.09001 * 109.55755 * 174.36031 * 22 21 20 43 43 H 1.08996 * 109.55968 * 294.68708 * 22 21 20 44 44 H 1.08997 * 109.46707 * 60.00031 * 24 13 12 45 45 H 1.08994 * 109.47029 * 179.97438 * 24 13 12 46 46 H 1.08997 * 109.47258 * 300.00401 * 25 10 9 47 47 H 1.09001 * 109.47081 * 59.99981 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.1812 -4.7522 0.6090 12 6 1.9466 -6.0770 0.6096 13 6 2.3109 -6.4560 -0.8272 14 7 3.0433 -7.7248 -0.8268 15 6 3.0348 -8.5082 -1.9235 16 8 2.4205 -8.1628 -2.9106 17 6 3.7877 -9.8137 -1.9229 18 6 3.6164 -10.5018 -3.2786 19 8 4.2320 -11.7915 -3.2395 20 6 4.1493 -12.5078 -4.4755 21 6 4.8041 -11.6711 -5.5802 22 6 4.1510 -10.2849 -5.6041 23 8 4.2335 -9.7098 -4.2963 24 6 3.1880 -5.3606 -1.4369 25 6 2.4222 -4.0355 -1.4376 26 1 -0.4850 0.8399 0.0004 27 1 0.3558 -2.3881 0.0002 28 1 2.9691 -3.5504 0.5889 29 1 0.2705 -4.8584 0.0196 30 1 0.9220 -4.4823 1.6328 31 1 1.3218 -6.8572 1.0443 32 1 2.8570 -5.9703 1.1992 33 1 1.4004 -6.5626 -1.4170 34 1 3.5342 -8.0012 -0.0372 35 1 3.3964 -10.4582 -1.1358 36 1 4.8457 -9.6228 -1.7438 37 1 2.5545 -10.6126 -3.4983 38 1 4.6714 -13.4600 -4.3811 39 1 3.1034 -12.6881 -4.7235 40 1 5.8702 -11.5690 -5.3776 41 1 4.6606 -12.1612 -6.5431 42 1 4.6741 -9.6472 -6.3167 43 1 3.1050 -10.3793 -5.8958 44 1 4.0985 -5.2540 -0.8472 45 1 3.4480 -5.6309 -2.4603 46 1 1.5115 -4.1417 -2.0270 47 1 3.0470 -3.2550 -1.8719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026480581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -137.880228 kcal Electronic energy + Delta-G solvation = -26319.478635 eV Core-core repulsion = 22501.612679 eV Total energy + Delta-G solvation = -3817.865956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51916 -39.65481 -37.90028 -35.95191 -34.82478 -33.55403 -32.98823 -31.01110 -30.36907 -30.06147 -27.26367 -26.31858 -24.29016 -23.31024 -22.30768 -21.54344 -21.01371 -20.37883 -19.40611 -17.95951 -17.13633 -16.97623 -16.83602 -16.12568 -16.07163 -15.29612 -15.09261 -14.95519 -14.92476 -14.10274 -13.75556 -13.62917 -13.57714 -13.51092 -13.27665 -13.07230 -12.49718 -12.35723 -11.96741 -11.89430 -11.77140 -11.46950 -11.45378 -11.37689 -10.99544 -10.79609 -10.72330 -10.63450 -10.35296 -10.15697 -10.06915 -9.98175 -9.84611 -9.72012 -9.54317 -8.93182 -8.81168 -6.90676 -5.72527 -3.00848 2.60645 2.78194 3.35464 3.46128 3.51102 3.52631 3.54895 4.32620 4.34664 4.44878 4.59986 4.62698 4.71309 4.85234 4.92938 4.99412 5.02026 5.08851 5.14895 5.31671 5.34049 5.35512 5.45670 5.55620 5.64438 5.65879 5.72765 5.77347 5.89513 5.92330 6.07437 6.27961 6.31174 6.34712 6.49011 6.53797 6.60932 6.69999 6.77340 6.86222 7.03356 7.19502 7.47566 7.74071 8.20601 8.46504 9.57284 10.16273 10.50755 11.50298 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.002255 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.535844 B =12414.402472 C =12937.176990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 C -0.120 4.120 12 C -0.118 4.118 13 C 0.146 3.854 14 N -0.726 5.726 15 C 0.518 3.482 16 O -0.528 6.528 17 C -0.129 4.129 18 C 0.264 3.736 19 O -0.397 6.397 20 C 0.059 3.941 21 C -0.194 4.194 22 C 0.058 3.942 23 O -0.376 6.376 24 C -0.124 4.124 25 C -0.132 4.132 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.398 0.602 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.577 -27.685 -5.389 29.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.159 4.159 12 C -0.157 4.157 13 C 0.043 3.957 14 N -0.377 5.377 15 C 0.303 3.697 16 O -0.404 6.404 17 C -0.169 4.169 18 C 0.169 3.831 19 O -0.318 6.318 20 C -0.017 4.017 21 C -0.232 4.232 22 C -0.019 4.019 23 O -0.297 6.297 24 C -0.163 4.163 25 C -0.173 4.173 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.232 0.768 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.409 -27.160 -5.880 29.034 hybrid contribution 0.261 0.625 -0.075 0.681 sum 8.670 -26.535 -5.954 28.544 Atomic orbital electron populations 1.69661 1.05077 1.25561 1.57956 1.24741 0.95517 0.97659 1.03246 0.86208 0.78623 0.83980 0.77496 1.21781 1.21845 1.20814 1.19245 0.90967 0.84169 1.42285 0.91234 1.42434 1.05790 0.99818 1.88562 1.20244 0.94274 0.85952 0.92823 1.21751 0.98939 0.93505 1.01734 1.21745 1.00813 0.98232 0.94906 1.21104 0.95434 0.81790 0.97416 1.46113 1.53591 1.21974 1.15997 1.20124 0.81125 0.85209 0.83221 1.90749 1.43147 1.73763 1.32711 1.21472 1.03764 0.95296 0.96393 1.22857 0.93422 0.78457 0.88407 1.88047 1.80013 1.29698 1.34034 1.22636 1.00244 0.95195 0.83637 1.22816 1.02292 0.97694 1.00389 1.22619 1.00271 0.93837 0.85137 1.88190 1.78944 1.46306 1.16213 1.21901 0.98530 0.95323 1.00542 1.22227 0.99747 0.94557 1.00740 0.93580 0.78321 0.93616 0.91992 0.91391 0.91911 0.91563 0.89513 0.76848 0.86729 0.87240 0.91751 0.88255 0.92719 0.89993 0.89687 0.88260 0.92698 0.92353 0.92288 0.92534 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.31 5.12 -53.43 -0.27 -18.58 16 10 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 11 C -0.12 -1.93 5.39 -26.73 -0.14 -2.08 16 12 C -0.12 -1.46 5.39 -26.73 -0.14 -1.60 16 13 C 0.15 1.95 2.45 -67.93 -0.17 1.78 16 14 N -0.73 -7.74 5.08 -53.80 -0.27 -8.01 16 15 C 0.52 6.33 7.67 -10.99 -0.08 6.24 16 16 O -0.53 -8.73 15.08 -8.82 -0.13 -8.86 16 17 C -0.13 -1.17 5.78 -27.88 -0.16 -1.33 16 18 C 0.26 2.82 2.80 37.16 0.10 2.93 16 19 O -0.40 -3.89 10.54 -59.04 -0.62 -4.51 16 20 C 0.06 0.41 6.96 37.29 0.26 0.67 16 21 C -0.19 -1.29 6.35 -26.46 -0.17 -1.46 16 22 C 0.06 0.52 6.96 37.29 0.26 0.78 16 23 O -0.38 -4.68 9.77 -64.74 -0.63 -5.31 16 24 C -0.12 -1.89 5.50 -26.70 -0.15 -2.04 16 25 C -0.13 -2.45 5.51 -26.70 -0.15 -2.60 16 26 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 28 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.34 7.58 -51.92 -0.39 0.95 16 34 H 0.40 2.96 8.60 -40.82 -0.35 2.61 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -34.34 374.91 -9.76 -44.10 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.21 Total: 8.38 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.97 Total: -2.69 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.18 Total: -54.40 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.39 Total: -18.68 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.34 -9.76 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026480581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.780 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds