Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47055 * 125.41080 * 2 1 4 4 C 1.54100 * 103.86154 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.55098 * 241.26114 * 4 3 2 6 6 C 1.50702 * 110.54981 * 118.59160 * 4 3 2 7 7 O 1.21282 * 120.00245 * 260.00060 * 6 4 3 8 8 N 1.34779 * 119.99549 * 79.99760 * 6 4 3 9 9 C 1.46502 * 119.99833 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47202 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.51283 * 305.00211 * 10 9 8 12 12 C 1.53296 * 109.51291 * 184.89805 * 10 9 8 13 13 N 1.47151 * 108.38513 * 187.77286 * 12 10 9 14 14 C 1.36936 * 120.98318 * 230.51770 * 13 12 10 15 15 H 1.08003 * 120.00086 * 26.23143 * 14 13 12 16 16 C 1.38820 * 119.99910 * 206.23977 * 14 13 12 17 17 N 1.31620 * 119.99999 * 16.90999 * 16 14 13 18 18 Si 1.86795 * 119.99793 * 196.91507 * 16 14 13 19 19 H 1.48506 * 109.46956 * 89.99993 * 18 16 14 20 20 H 1.48496 * 109.47347 * 209.99735 * 18 16 14 21 21 H 1.48494 * 109.47353 * 329.99875 * 18 16 14 22 22 C 1.47148 * 118.03663 * 50.53456 * 13 12 10 23 23 C 1.53296 * 108.38606 * 309.46576 * 22 13 12 24 24 O 1.42958 * 109.51160 * 65.10019 * 10 9 8 25 25 N 1.47057 * 103.86476 * 359.76801 * 4 3 2 26 26 C 1.33947 * 125.40793 * 180.02562 * 2 1 3 27 27 O 1.21588 * 123.04469 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47075 * 299.97657 * 1 2 3 30 30 H 1.08999 * 109.46973 * 59.97222 * 1 2 3 31 31 H 1.08993 * 110.54552 * 298.59292 * 3 2 1 32 32 H 1.09003 * 110.54870 * 61.40731 * 3 2 1 33 33 H 0.96996 * 120.00343 * 0.02562 * 8 6 4 34 34 H 1.09001 * 109.47178 * 300.00348 * 9 8 6 35 35 H 1.09000 * 109.47085 * 60.00174 * 9 8 6 36 36 H 1.08996 * 109.68098 * 307.49816 * 12 10 9 37 37 H 1.08999 * 109.67993 * 68.01326 * 12 10 9 38 38 H 0.96992 * 119.99999 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.68121 * 69.18526 * 22 13 12 40 40 H 1.08999 * 109.68736 * 189.74246 * 22 13 12 41 41 H 1.09007 * 109.51188 * 172.22124 * 23 22 13 42 42 H 1.08998 * 109.51513 * 292.37620 * 23 22 13 43 43 H 0.96990 * 125.41526 * 180.22658 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0007 5 1 4.2869 0.9482 0.8941 6 6 4.4900 1.0666 -1.2399 7 8 4.6015 0.3055 -2.1775 8 7 5.0276 2.3008 -1.3061 9 6 5.7461 2.7231 -2.5109 10 6 6.2526 4.1550 -2.3271 11 1 5.4176 4.8063 -2.0688 12 6 6.8973 4.6414 -3.6301 13 7 7.5393 5.9404 -3.3737 14 6 7.3002 7.0173 -4.1850 15 1 6.3726 7.0842 -4.7342 16 6 8.2500 8.0229 -4.3017 17 7 9.4901 7.8045 -3.9183 18 14 7.7682 9.6859 -5.0028 19 1 7.3221 10.5768 -3.9016 20 1 8.9383 10.2925 -5.6869 21 1 6.6613 9.5106 -5.9770 22 6 8.4462 6.0479 -2.2199 23 6 7.7261 5.4930 -0.9856 24 8 7.2247 4.1868 -1.2794 25 7 3.5538 -0.8248 0.0048 26 6 2.2411 -1.0917 -0.0005 27 8 1.7946 -2.2226 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5143 -0.8897 31 1 2.1407 1.7933 -0.8961 32 1 2.1407 1.7934 0.8962 33 1 4.9387 2.9094 -0.5561 34 1 6.5925 2.0577 -2.6812 35 1 5.0738 2.6824 -3.3679 36 1 7.6455 3.9210 -3.9607 37 1 6.1322 4.7546 -4.3982 38 1 10.1537 8.5072 -3.9996 39 1 9.3504 5.4690 -2.4085 40 1 8.7068 7.0931 -2.0538 41 1 8.4254 5.4354 -0.1513 42 1 6.8970 6.1496 -0.7219 43 1 4.2620 -1.4875 0.0089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035477641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -58.959405 kcal Electronic energy + Delta-G solvation = -26158.690134 eV Core-core repulsion = 22240.706098 eV Total energy + Delta-G solvation = -3917.984036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62492 -39.56193 -38.51256 -36.48366 -35.10925 -34.44085 -34.33856 -31.76938 -30.93867 -29.68766 -27.87355 -27.28475 -25.60620 -23.97689 -23.24524 -21.91855 -20.87126 -20.83507 -19.73313 -18.13499 -17.87170 -17.03480 -16.68005 -16.22225 -16.06267 -15.65891 -15.11355 -15.05106 -14.65646 -14.46604 -14.33065 -14.09588 -13.85636 -13.80723 -13.37432 -13.25943 -12.94999 -12.81078 -12.70778 -12.52832 -12.20489 -11.66614 -11.19990 -10.93652 -10.81723 -10.58260 -10.50740 -10.40370 -10.32073 -10.06506 -9.78197 -9.52347 -9.20113 -9.16425 -8.95027 -8.62155 -6.84647 -5.92020 -3.36229 2.10943 2.39897 2.66321 3.03350 3.28886 3.36123 3.37573 3.57807 3.88164 4.10226 4.32451 4.36654 4.41246 4.68536 4.91039 4.99011 5.04284 5.16987 5.25253 5.35784 5.36733 5.41543 5.54181 5.68657 5.72275 5.91102 6.04074 6.16498 6.26893 6.29387 6.33452 6.38936 6.65794 6.78072 7.01002 7.11123 7.31137 7.43269 7.62956 7.74497 7.97695 8.25204 8.29557 9.03313 9.65830 10.22185 11.16107 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.030431 B = 0.002470 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.882342 B =11334.587670 C =11659.249339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.104 3.896 5 H 0.118 0.882 6 C 0.499 3.501 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.130 3.870 10 C 0.065 3.935 11 H 0.060 0.940 12 C 0.121 3.879 13 N -0.594 5.594 14 C -0.257 4.257 15 H 0.070 0.930 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.390 6.390 25 N -0.714 5.714 26 C 0.705 3.295 27 O -0.584 6.584 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.405 0.595 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.256 0.744 39 H 0.028 0.972 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 -8.876 11.694 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.136 0.864 6 C 0.282 3.718 7 O -0.401 6.401 8 N -0.365 5.365 9 C 0.006 3.994 10 C 0.005 3.995 11 H 0.078 0.922 12 C -0.006 4.006 13 N -0.318 5.318 14 C -0.387 4.387 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.203 1.203 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.310 6.310 25 N -0.375 5.375 26 C 0.405 3.595 27 O -0.462 6.462 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.239 0.761 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -13.235 -10.034 11.055 19.951 hybrid contribution 0.316 1.445 -0.210 1.494 sum -12.919 -8.589 10.845 18.928 Atomic orbital electron populations 1.21437 0.75303 1.04113 1.01469 1.46994 1.06495 1.05564 1.78656 1.22283 0.86204 0.89119 1.04227 1.21842 0.97193 0.83432 0.98197 0.86392 1.20677 0.79866 0.82296 0.88998 1.90766 1.58652 1.52657 1.37986 1.45939 1.55507 1.15009 1.20059 1.21474 0.96170 0.94966 0.86789 1.22800 0.91382 0.93959 0.91343 0.92239 1.21438 0.96433 0.89342 0.93398 1.44072 1.52761 1.05778 1.29145 1.19207 0.99530 0.97322 1.22599 0.91273 1.25061 0.94565 0.99999 0.99979 1.70029 1.00807 1.32460 1.51327 0.86227 0.77537 0.83975 0.78655 1.21344 1.21640 1.20349 1.21453 0.91088 1.01962 0.84204 1.23332 0.97659 0.83441 0.99339 1.87782 1.59027 1.30039 1.54110 1.44826 1.06962 1.06186 1.79568 1.15808 0.81700 0.84649 0.77304 1.90962 1.75811 1.20904 1.58487 0.89474 0.91915 0.91966 0.89453 0.88597 0.76059 0.90464 0.89970 0.95226 0.91748 0.93424 0.95347 0.88727 0.89984 0.94049 0.72289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.80 11.21 59.85 0.67 1.48 16 2 N -0.64 -5.94 3.36 -186.73 -0.63 -6.56 16 3 C 0.11 0.68 7.32 -3.16 -0.02 0.66 16 4 C 0.10 0.80 4.16 -68.20 -0.28 0.52 16 5 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 6 C 0.50 5.49 6.95 -10.98 -0.08 5.42 16 7 O -0.53 -8.22 16.57 5.56 0.09 -8.12 16 8 N -0.71 -7.28 5.51 -60.29 -0.33 -7.61 16 9 C 0.13 1.69 5.34 -4.04 -0.02 1.67 16 10 C 0.07 1.01 2.81 -26.58 -0.07 0.93 16 11 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 12 C 0.12 2.36 6.02 -3.53 -0.02 2.34 16 13 N -0.59 -14.12 3.05 -171.83 -0.52 -14.64 16 14 C -0.26 -6.72 9.65 -15.06 -0.15 -6.87 16 15 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 16 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 17 N -0.90 -25.21 11.14 55.49 0.62 -24.59 16 18 Si 0.91 20.77 29.59 -169.99 -5.03 15.74 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 C 0.14 3.13 5.44 -3.54 -0.02 3.11 16 23 C 0.04 0.70 6.98 37.31 0.26 0.96 16 24 O -0.39 -6.54 10.33 -35.23 -0.36 -6.90 16 25 N -0.71 -7.37 5.62 -59.33 -0.33 -7.70 16 26 C 0.71 8.90 8.60 -88.39 -0.76 8.14 16 27 O -0.58 -9.65 17.29 5.29 0.09 -9.56 16 28 H 0.09 0.70 7.52 -51.93 -0.39 0.31 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.55 7.72 -51.93 -0.40 0.15 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.36 6.14 -51.93 -0.32 2.04 16 41 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.43 4.19 8.96 -40.82 -0.37 3.82 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -35.47 355.77 -8.06 -43.53 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.43 Total: 2.71 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: -0.58 Total: 18.35 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -1.20 Total: -61.11 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.18 Total: -24.58 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.47 -8.06 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035477641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.425 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds