Wall clock time and date at job start Fri Apr 10 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47390 * 125.37966 * 2 1 4 4 C 1.54102 * 103.70126 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.54174 * 118.78134 * 4 3 2 6 6 C 1.50698 * 110.54775 * 241.44503 * 4 3 2 7 7 O 1.21286 * 119.99990 * 98.00752 * 6 4 3 8 8 N 1.34774 * 120.00191 * 277.99991 * 6 4 3 9 9 C 1.46503 * 120.00222 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47200 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.55810 * 60.12633 * 10 9 8 12 12 C 1.53296 * 109.51308 * 180.25459 * 10 9 8 13 13 N 1.47150 * 108.38678 * 172.22336 * 12 10 9 14 14 C 1.36933 * 120.98264 * 129.43900 * 13 12 10 15 15 H 1.07996 * 120.00422 * 206.24118 * 14 13 12 16 16 C 1.38812 * 120.00041 * 26.24696 * 14 13 12 17 17 N 1.31615 * 119.99774 * 16.90494 * 16 14 13 18 18 Si 1.86799 * 120.00118 * 196.91230 * 16 14 13 19 19 H 1.48506 * 109.47286 * 89.99580 * 18 16 14 20 20 H 1.48500 * 109.47049 * 209.99500 * 18 16 14 21 21 H 1.48501 * 109.46999 * 329.99726 * 18 16 14 22 22 C 1.47158 * 118.03667 * 309.46701 * 13 12 10 23 23 C 1.53295 * 108.38379 * 50.53302 * 22 13 12 24 24 O 1.42967 * 109.51071 * 299.99806 * 10 9 8 25 25 N 1.47054 * 103.99399 * 0.11458 * 4 3 2 26 26 C 1.33951 * 125.40670 * 180.09728 * 2 1 3 27 27 O 1.21583 * 123.04789 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.46955 * 179.87702 * 1 2 3 29 29 H 1.09003 * 109.47020 * 299.87803 * 1 2 3 30 30 H 1.08998 * 109.47252 * 59.87904 * 1 2 3 31 31 H 1.09001 * 110.58928 * 61.44093 * 3 2 1 32 32 H 1.08999 * 110.65720 * 298.53059 * 3 2 1 33 33 H 0.97006 * 119.99772 * 0.02562 * 8 6 4 34 34 H 1.09001 * 109.47079 * 60.00311 * 9 8 6 35 35 H 1.08994 * 109.46931 * 300.00164 * 9 8 6 36 36 H 1.09000 * 109.67856 * 291.94839 * 12 10 9 37 37 H 1.08995 * 109.68266 * 52.46204 * 12 10 9 38 38 H 0.97006 * 119.99882 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.67591 * 290.80906 * 22 13 12 40 40 H 1.08996 * 109.67987 * 170.25954 * 22 13 12 41 41 H 1.09004 * 109.50833 * 187.78053 * 23 22 13 42 42 H 1.08989 * 109.51742 * 67.62344 * 23 22 13 43 43 H 0.96998 * 125.41288 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3184 1.2017 0.0000 4 6 3.7504 0.6325 0.0007 5 1 4.2877 0.9476 -0.8938 6 6 4.4906 1.0642 1.2403 7 8 4.5691 0.3157 2.1914 8 7 5.0656 2.2821 1.2921 9 6 5.7857 2.7016 2.4970 10 6 6.3370 4.1145 2.2956 11 1 5.5139 4.8042 2.1089 12 6 7.0962 4.5520 3.5535 13 7 7.7716 5.8277 3.2679 14 6 7.6379 6.8999 4.1091 15 1 7.7533 7.9035 3.7273 16 6 7.3542 6.6968 5.4527 17 7 7.5385 5.5105 5.9921 18 14 6.7109 8.1072 6.4950 19 1 5.2269 8.1264 6.4402 20 1 7.1520 7.9247 7.9012 21 1 7.2421 9.3915 5.9721 22 6 8.5944 5.9175 2.0512 23 6 7.7623 5.4135 0.8665 24 8 7.2305 4.1239 1.1796 25 7 3.5538 -0.8249 -0.0019 26 6 2.2411 -1.0918 -0.0019 27 8 1.7946 -2.2227 -0.0033 28 1 -0.3633 -1.0277 -0.0022 29 1 -0.3633 0.5120 0.8911 30 1 -0.3634 0.5157 -0.8889 31 1 2.1426 1.7967 0.8962 32 1 2.1438 1.7973 -0.8961 33 1 5.0026 2.8809 0.5315 34 1 6.6095 2.0133 2.6860 35 1 5.1046 2.6955 3.3478 36 1 6.3953 4.6841 4.3778 37 1 7.8353 3.7958 3.8178 38 1 7.3399 5.3685 6.9309 39 1 9.4849 5.2990 2.1639 40 1 8.8858 6.9538 1.8807 41 1 8.3949 5.3414 -0.0182 42 1 6.9444 6.1078 0.6745 43 1 4.2621 -1.4876 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035477645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:14 Heat of formation + Delta-G solvation = -58.845468 kcal Electronic energy + Delta-G solvation = -26351.276770 eV Core-core repulsion = 22433.297675 eV Total energy + Delta-G solvation = -3917.979095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54538 -39.46824 -38.48404 -36.41453 -34.99679 -34.44123 -34.28893 -31.54094 -31.16987 -29.63624 -27.75852 -27.21713 -25.61031 -23.90525 -23.34134 -21.79144 -20.80132 -20.73270 -19.72222 -18.06351 -17.80042 -17.08791 -16.59780 -16.15077 -15.96490 -15.50666 -15.25839 -14.97070 -14.52031 -14.41586 -14.27435 -14.09840 -13.84891 -13.75168 -13.36860 -13.18366 -12.95658 -12.76869 -12.64899 -12.44179 -12.11245 -11.62861 -11.17700 -10.92079 -10.82049 -10.53855 -10.49384 -10.32495 -10.32084 -10.09594 -9.75576 -9.47367 -9.19457 -9.04800 -8.88651 -8.62820 -6.84528 -5.92038 -3.36224 2.17008 2.48998 2.74451 3.10662 3.29359 3.36450 3.38236 3.63718 3.95372 4.12865 4.36766 4.42325 4.46483 4.74567 4.96397 5.06197 5.09922 5.21961 5.28010 5.41295 5.44312 5.50052 5.59129 5.76206 5.83462 5.90001 6.01356 6.11842 6.24817 6.34818 6.38867 6.49893 6.69767 6.83494 6.97293 7.16812 7.38542 7.42672 7.63485 7.72918 8.08809 8.25115 8.35186 9.02967 9.65801 10.22381 11.16018 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002825 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.082470 B = 9908.871036 C =10472.517614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.638 5.638 3 C 0.106 3.894 4 C 0.104 3.896 5 H 0.117 0.883 6 C 0.497 3.503 7 O -0.524 6.524 8 N -0.712 5.712 9 C 0.132 3.868 10 C 0.055 3.945 11 H 0.057 0.943 12 C 0.152 3.848 13 N -0.594 5.594 14 C -0.258 4.258 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.108 3.892 23 C 0.051 3.949 24 O -0.391 6.391 25 N -0.714 5.714 26 C 0.706 3.294 27 O -0.585 6.585 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.404 0.596 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.031 0.969 38 H 0.257 0.743 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.546 -4.498 -15.464 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.378 5.378 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.135 0.865 6 C 0.279 3.721 7 O -0.400 6.400 8 N -0.364 5.364 9 C 0.008 3.992 10 C -0.004 4.004 11 H 0.075 0.925 12 C 0.025 3.975 13 N -0.318 5.318 14 C -0.387 4.387 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.018 4.018 23 C -0.027 4.027 24 O -0.310 6.310 25 N -0.375 5.375 26 C 0.406 3.594 27 O -0.462 6.462 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.238 0.762 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -9.860 -5.802 -14.661 18.597 hybrid contribution 0.160 1.219 0.488 1.323 sum -9.700 -4.583 -14.173 17.775 Atomic orbital electron populations 1.21431 0.75365 1.04079 1.01443 1.47068 1.06470 1.05575 1.78654 1.22343 0.86177 0.89041 1.04217 1.21847 0.97194 0.83389 0.98223 0.86516 1.20672 0.79971 0.82277 0.89134 1.90773 1.59381 1.52709 1.37108 1.45963 1.54477 1.16520 1.19461 1.21475 0.95941 0.95099 0.86647 1.23153 0.92483 0.94260 0.90551 0.92500 1.21306 0.95875 0.87423 0.92857 1.44047 1.52934 1.11020 1.23800 1.19193 1.44641 0.86279 0.88629 0.91282 1.25070 1.01169 0.96945 0.96390 1.70014 1.50205 1.21959 1.12324 0.86241 0.78904 0.81691 0.79630 1.21314 1.21612 1.20381 1.21608 0.93199 0.99292 0.87717 1.23008 0.97105 0.84740 0.97888 1.87768 1.63591 1.30216 1.49446 1.44822 1.06955 1.06196 1.79572 1.15796 0.81706 0.84625 0.77280 1.90957 1.75831 1.20899 1.58562 0.89499 0.91962 0.91963 0.89379 0.88615 0.76174 0.90542 0.89844 0.88573 0.95056 0.93339 0.95535 0.91935 0.89963 0.93805 0.72314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.88 11.22 59.85 0.67 1.55 16 2 N -0.64 -6.41 3.37 -186.46 -0.63 -7.04 16 3 C 0.11 0.77 7.34 -2.98 -0.02 0.75 16 4 C 0.10 0.89 4.16 -68.21 -0.28 0.61 16 5 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 6 C 0.50 6.05 6.94 -10.99 -0.08 5.97 16 7 O -0.52 -8.92 16.58 5.55 0.09 -8.83 16 8 N -0.71 -8.18 5.45 -60.30 -0.33 -8.51 16 9 C 0.13 1.99 5.37 -4.04 -0.02 1.97 16 10 C 0.06 0.94 2.87 -26.58 -0.08 0.86 16 11 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 12 C 0.15 3.39 4.73 -3.53 -0.02 3.37 16 13 N -0.59 -14.12 3.05 -171.83 -0.52 -14.65 16 14 C -0.26 -6.74 9.65 -15.06 -0.15 -6.88 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 16 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 17 N -0.90 -25.16 11.14 55.49 0.62 -24.54 16 18 Si 0.91 20.80 29.59 -169.99 -5.03 15.77 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.11 2.12 6.74 -3.53 -0.02 2.09 16 23 C 0.05 0.80 6.99 37.31 0.26 1.06 16 24 O -0.39 -6.49 10.13 -35.23 -0.36 -6.85 16 25 N -0.71 -7.90 5.62 -59.33 -0.33 -8.23 16 26 C 0.71 9.40 8.61 -88.39 -0.76 8.64 16 27 O -0.58 -10.03 17.29 5.29 0.09 -9.94 16 28 H 0.09 0.75 7.52 -51.93 -0.39 0.36 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.65 7.72 -51.93 -0.40 0.24 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 3.59 8.35 -40.82 -0.34 3.25 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.10 2.38 6.14 -51.93 -0.32 2.06 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.43 4.49 8.96 -40.82 -0.37 4.12 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -35.42 355.49 -8.05 -43.47 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.43 Total: 4.00 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: -0.58 Total: 19.99 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -1.19 Total: -62.97 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.17 Total: -25.61 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.42 -8.05 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035477645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.379 kcal (2) G-P(sol) polarization free energy of solvation -35.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds