Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.47057 * 125.40853 * 2 1 4 4 C 1.54111 * 103.86189 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.54978 * 118.74112 * 4 3 2 6 6 C 1.50697 * 110.54435 * 241.40538 * 4 3 2 7 7 O 1.21277 * 120.00480 * 100.00423 * 6 4 3 8 8 N 1.34781 * 120.00210 * 279.99681 * 6 4 3 9 9 C 1.46495 * 120.00288 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47195 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.50978 * 304.89549 * 10 9 8 12 12 C 1.52875 * 109.58311 * 184.88110 * 10 9 8 13 13 N 1.47155 * 108.61059 * 187.92053 * 12 10 9 14 14 C 1.36933 * 120.98220 * 230.50120 * 13 12 10 15 15 H 1.07999 * 120.00118 * 26.02043 * 14 13 12 16 16 C 1.38816 * 120.00181 * 206.01586 * 14 13 12 17 17 N 1.31624 * 119.99453 * 17.03366 * 16 14 13 18 18 Si 1.86798 * 120.00335 * 197.03751 * 16 14 13 19 19 H 1.48500 * 109.46990 * 265.30409 * 18 16 14 20 20 H 1.48507 * 109.46876 * 25.30015 * 18 16 14 21 21 H 1.48497 * 109.47171 * 145.29985 * 18 16 14 22 22 C 1.47157 * 118.03406 * 50.22337 * 13 12 10 23 23 C 1.53292 * 108.38231 * 309.71839 * 22 13 12 24 24 O 1.42962 * 109.51493 * 64.99789 * 10 9 8 25 25 N 1.47047 * 103.86219 * 359.97438 * 4 3 2 26 26 C 1.33946 * 125.41434 * 179.97438 * 2 1 3 27 27 O 1.21590 * 123.03990 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47442 * 90.00070 * 1 2 3 29 29 H 1.09005 * 109.47000 * 209.99935 * 1 2 3 30 30 H 1.09001 * 109.47627 * 329.99659 * 1 2 3 31 31 H 1.09000 * 110.54820 * 61.40574 * 3 2 1 32 32 H 1.09001 * 110.66984 * 298.64934 * 3 2 1 33 33 H 0.97007 * 119.99597 * 0.02562 * 8 6 4 34 34 H 1.08996 * 109.47446 * 60.00208 * 9 8 6 35 35 H 1.09002 * 109.46844 * 299.99656 * 9 8 6 36 36 H 1.09000 * 109.62083 * 68.09725 * 12 10 9 37 37 H 1.09005 * 109.52360 * 307.68498 * 12 10 9 38 38 H 0.96994 * 119.99380 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.67870 * 69.43893 * 22 13 12 40 40 H 1.08996 * 109.67737 * 189.99855 * 22 13 12 41 41 H 1.09001 * 109.51129 * 172.22247 * 23 22 13 42 42 H 1.08996 * 109.51890 * 292.32680 * 23 22 13 43 43 H 0.97005 * 125.41260 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2861 0.9488 -0.8957 6 6 4.4907 1.0662 1.2382 7 8 4.6030 0.3047 2.1754 8 7 5.0284 2.3004 1.3047 9 6 5.7486 2.7217 2.5088 10 6 6.2537 4.1543 2.3258 11 1 6.8547 4.2154 1.4184 12 6 7.1082 4.5539 3.5288 13 7 7.4234 5.9876 3.4255 14 6 8.7113 6.4367 3.5467 15 1 9.5362 5.7835 3.3031 16 6 8.9568 7.7316 3.9826 17 7 8.0086 8.4118 4.5915 18 14 10.6326 8.5087 3.7052 19 1 11.4745 8.3143 4.9129 20 1 11.2879 7.8680 2.5366 21 1 10.4677 9.9614 3.4453 22 6 6.3145 6.9238 3.1819 23 6 5.4994 6.4081 1.9905 24 8 5.1395 5.0439 2.2214 25 7 3.5537 -0.8247 -0.0003 26 6 2.2411 -1.0916 0.0005 27 8 1.7946 -2.2226 0.0014 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 2.1405 1.7934 0.8962 32 1 2.1414 1.7955 -0.8950 33 1 4.9384 2.9096 0.5552 34 1 6.5953 2.0564 2.6773 35 1 5.0775 2.6803 3.3667 36 1 8.0314 3.9743 3.5308 37 1 6.5538 4.3653 4.4482 38 1 8.1802 9.3164 4.8964 39 1 5.6788 6.9777 4.0658 40 1 6.7123 7.9126 2.9542 41 1 4.5967 7.0089 1.8796 42 1 6.0977 6.4788 1.0821 43 1 4.2621 -1.4874 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035477652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -58.585888 kcal Electronic energy + Delta-G solvation = -26198.704700 eV Core-core repulsion = 22280.736861 eV Total energy + Delta-G solvation = -3917.967839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61044 -39.56041 -38.52515 -36.46564 -35.10905 -34.43520 -34.33015 -31.78474 -30.93917 -29.67914 -27.86410 -27.28183 -25.60708 -23.96923 -23.24747 -21.92179 -20.87170 -20.82671 -19.72149 -18.12364 -17.86348 -17.02516 -16.69007 -16.13655 -16.11482 -15.66984 -15.08893 -15.03658 -14.58495 -14.50042 -14.31406 -14.19593 -13.84831 -13.74087 -13.33379 -13.16571 -13.08519 -12.78810 -12.70344 -12.54138 -12.20004 -11.67181 -11.20259 -10.93306 -10.80285 -10.56225 -10.49444 -10.39497 -10.35018 -10.06028 -9.78169 -9.52053 -9.19778 -9.17336 -8.92341 -8.62063 -6.84270 -5.92314 -3.35820 2.12453 2.39665 2.68230 3.04256 3.28624 3.36279 3.37834 3.58787 3.90148 4.09440 4.32848 4.36773 4.41667 4.68353 4.93899 4.99801 5.05263 5.22373 5.25396 5.35278 5.38366 5.41651 5.55681 5.69474 5.72875 5.90588 6.03609 6.16202 6.26566 6.31403 6.33500 6.38457 6.65619 6.78599 7.00624 7.12886 7.31195 7.42802 7.62919 7.73872 7.97777 8.25125 8.31163 9.03284 9.65997 10.22258 11.16088 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.036302 B = 0.002463 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.130221 B =11366.901562 C =11780.702169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.637 5.637 3 C 0.105 3.895 4 C 0.105 3.895 5 H 0.117 0.883 6 C 0.499 3.501 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.130 3.870 10 C 0.065 3.935 11 H 0.059 0.941 12 C 0.121 3.879 13 N -0.594 5.594 14 C -0.257 4.257 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.278 1.278 21 H -0.288 1.288 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.390 6.390 25 N -0.715 5.715 26 C 0.705 3.295 27 O -0.584 6.584 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.405 0.595 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.030 0.970 38 H 0.255 0.745 39 H 0.029 0.971 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 -9.622 -12.601 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.377 5.377 3 C -0.019 4.019 4 C -0.006 4.006 5 H 0.135 0.865 6 C 0.281 3.719 7 O -0.400 6.400 8 N -0.365 5.365 9 C 0.006 3.994 10 C 0.005 3.995 11 H 0.077 0.923 12 C -0.006 4.006 13 N -0.318 5.318 14 C -0.386 4.386 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.204 1.204 21 H -0.214 1.214 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.310 6.310 25 N -0.376 5.376 26 C 0.405 3.595 27 O -0.461 6.461 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.239 0.761 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -11.502 -10.622 -11.806 19.609 hybrid contribution 1.519 0.944 -0.328 1.818 sum -9.984 -9.679 -12.134 18.455 Atomic orbital electron populations 1.21406 0.75271 1.03445 1.01903 1.47003 1.06493 1.05564 1.78625 1.22303 0.86143 0.89059 1.04375 1.21835 0.97283 0.83411 0.98075 0.86491 1.20690 0.79810 0.82329 0.89037 1.90765 1.58465 1.52835 1.37983 1.45944 1.55782 1.14757 1.20049 1.21469 0.96793 0.93693 0.87419 1.22719 0.88802 0.87655 1.00291 0.92263 1.21356 0.97052 0.88023 0.94195 1.44054 1.04432 0.99718 1.83548 1.19183 0.83004 0.97566 1.38865 0.91335 1.25051 0.97688 0.98954 0.97906 1.70036 1.32996 1.11758 1.39826 0.86243 0.83572 0.78620 0.78119 1.21314 1.20368 1.21440 1.21447 0.88501 0.95486 0.93255 1.23327 0.99343 0.81708 0.99405 1.87778 1.31166 1.18404 1.93604 1.44818 1.06975 1.06141 1.79674 1.15800 0.81670 0.84642 0.77385 1.90964 1.75841 1.20921 1.58391 0.92505 0.90361 0.90721 0.89280 0.88599 0.76062 0.89936 0.90497 0.91758 0.95259 0.93451 0.95338 0.88768 0.89980 0.94039 0.72344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.86 11.03 59.84 0.66 1.52 16 2 N -0.64 -6.12 3.36 -186.73 -0.63 -6.74 16 3 C 0.11 0.72 7.32 -3.16 -0.02 0.70 16 4 C 0.10 0.81 4.17 -68.21 -0.28 0.52 16 5 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 6 C 0.50 5.47 6.95 -10.98 -0.08 5.40 16 7 O -0.53 -8.20 16.56 5.56 0.09 -8.11 16 8 N -0.71 -7.26 5.50 -60.30 -0.33 -7.59 16 9 C 0.13 1.69 5.34 -4.04 -0.02 1.67 16 10 C 0.07 1.01 2.80 -26.79 -0.07 0.93 16 11 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 12 C 0.12 2.36 6.00 -3.75 -0.02 2.33 16 13 N -0.59 -14.12 3.05 -172.08 -0.53 -14.65 16 14 C -0.26 -6.72 9.65 -15.06 -0.15 -6.87 16 15 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 16 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 17 N -0.90 -25.20 11.15 55.49 0.62 -24.58 16 18 Si 0.91 20.76 29.59 -169.99 -5.03 15.73 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.14 3.12 5.45 -3.53 -0.02 3.10 16 23 C 0.04 0.69 6.98 37.31 0.26 0.95 16 24 O -0.39 -6.46 10.33 -35.23 -0.36 -6.82 16 25 N -0.71 -7.34 5.60 -59.33 -0.33 -7.67 16 26 C 0.70 9.00 8.60 -88.40 -0.76 8.24 16 27 O -0.58 -9.74 17.53 5.29 0.09 -9.65 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.65 7.91 -51.93 -0.41 0.24 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.40 3.17 8.47 -40.82 -0.35 2.82 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.34 6.15 -51.93 -0.32 2.02 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.43 4.10 8.96 -40.82 -0.37 3.73 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -35.50 356.17 -8.09 -43.59 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.46 Total: 2.62 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: -0.59 Total: 18.50 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -1.20 Total: -61.22 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.18 Total: -24.58 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.50 -8.09 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035477652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.999 kcal (2) G-P(sol) polarization free energy of solvation -35.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds