Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.47057 * 125.40853 * 2 1 4 4 C 1.54111 * 103.86189 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.54978 * 118.74112 * 4 3 2 6 6 C 1.50697 * 110.54435 * 241.40538 * 4 3 2 7 7 O 1.21277 * 120.00480 * 100.00423 * 6 4 3 8 8 N 1.34781 * 120.00210 * 279.99681 * 6 4 3 9 9 C 1.46495 * 120.00288 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47195 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.50978 * 304.89549 * 10 9 8 12 12 C 1.52875 * 109.58311 * 184.88110 * 10 9 8 13 13 N 1.47155 * 108.61059 * 187.92053 * 12 10 9 14 14 C 1.36933 * 120.98220 * 230.50120 * 13 12 10 15 15 H 1.07999 * 120.00118 * 26.02043 * 14 13 12 16 16 C 1.38816 * 120.00181 * 206.01586 * 14 13 12 17 17 N 1.31624 * 119.99453 * 17.03366 * 16 14 13 18 18 Si 1.86798 * 120.00335 * 197.03751 * 16 14 13 19 19 H 1.48500 * 109.46990 * 265.30409 * 18 16 14 20 20 H 1.48507 * 109.46876 * 25.30015 * 18 16 14 21 21 H 1.48497 * 109.47171 * 145.29985 * 18 16 14 22 22 C 1.47157 * 118.03406 * 50.22337 * 13 12 10 23 23 C 1.53292 * 108.38231 * 309.71839 * 22 13 12 24 24 O 1.42962 * 109.51493 * 64.99789 * 10 9 8 25 25 N 1.47047 * 103.86219 * 359.97438 * 4 3 2 26 26 C 1.33946 * 125.41434 * 179.97438 * 2 1 3 27 27 O 1.21590 * 123.03990 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47442 * 90.00070 * 1 2 3 29 29 H 1.09005 * 109.47000 * 209.99935 * 1 2 3 30 30 H 1.09001 * 109.47627 * 329.99659 * 1 2 3 31 31 H 1.09000 * 110.54820 * 61.40574 * 3 2 1 32 32 H 1.09001 * 110.66984 * 298.64934 * 3 2 1 33 33 H 0.97007 * 119.99597 * 0.02562 * 8 6 4 34 34 H 1.08996 * 109.47446 * 60.00208 * 9 8 6 35 35 H 1.09002 * 109.46844 * 299.99656 * 9 8 6 36 36 H 1.09000 * 109.62083 * 68.09725 * 12 10 9 37 37 H 1.09005 * 109.52360 * 307.68498 * 12 10 9 38 38 H 0.96994 * 119.99380 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.67870 * 69.43893 * 22 13 12 40 40 H 1.08996 * 109.67737 * 189.99855 * 22 13 12 41 41 H 1.09001 * 109.51129 * 172.22247 * 23 22 13 42 42 H 1.08996 * 109.51890 * 292.32680 * 23 22 13 43 43 H 0.97005 * 125.41260 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2861 0.9488 -0.8957 6 6 4.4907 1.0662 1.2382 7 8 4.6030 0.3047 2.1754 8 7 5.0284 2.3004 1.3047 9 6 5.7486 2.7217 2.5088 10 6 6.2537 4.1543 2.3258 11 1 6.8547 4.2154 1.4184 12 6 7.1082 4.5539 3.5288 13 7 7.4234 5.9876 3.4255 14 6 8.7113 6.4367 3.5467 15 1 9.5362 5.7835 3.3031 16 6 8.9568 7.7316 3.9826 17 7 8.0086 8.4118 4.5915 18 14 10.6326 8.5087 3.7052 19 1 11.4745 8.3143 4.9129 20 1 11.2879 7.8680 2.5366 21 1 10.4677 9.9614 3.4453 22 6 6.3145 6.9238 3.1819 23 6 5.4994 6.4081 1.9905 24 8 5.1395 5.0439 2.2214 25 7 3.5537 -0.8247 -0.0003 26 6 2.2411 -1.0916 0.0005 27 8 1.7946 -2.2226 0.0014 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 2.1405 1.7934 0.8962 32 1 2.1414 1.7955 -0.8950 33 1 4.9384 2.9096 0.5552 34 1 6.5953 2.0564 2.6773 35 1 5.0775 2.6803 3.3667 36 1 8.0314 3.9743 3.5308 37 1 6.5538 4.3653 4.4482 38 1 8.1802 9.3164 4.8964 39 1 5.6788 6.9777 4.0658 40 1 6.7123 7.9126 2.9542 41 1 4.5967 7.0089 1.8796 42 1 6.0977 6.4788 1.0821 43 1 4.2621 -1.4874 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035477652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -88.289957 kcal Electronic energy + Delta-G solvation = -26199.992765 eV Core-core repulsion = 22280.736861 eV Total energy + Delta-G solvation = -3919.255904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.39943 -40.62201 -39.85678 -37.41680 -36.50732 -35.80356 -35.07734 -33.38961 -32.48216 -30.55270 -29.16534 -28.23789 -26.98181 -25.06814 -24.66238 -23.26587 -21.86801 -21.61750 -21.16822 -19.05946 -18.77640 -18.60660 -17.66242 -17.32821 -17.08982 -16.90712 -16.47293 -16.17198 -15.94364 -15.48641 -15.47767 -15.19135 -15.03209 -14.95765 -14.57183 -14.46814 -14.41106 -13.87663 -13.38489 -13.27299 -13.19492 -13.00788 -12.89508 -12.68689 -12.49219 -12.17990 -12.05559 -11.84863 -11.54591 -11.40518 -11.25441 -10.78329 -10.54501 -10.40943 -10.15071 -9.58310 -8.74505 -7.91221 -5.37911 1.35308 1.46953 1.48770 1.58380 1.60325 1.84259 2.16315 2.48455 2.80023 2.92298 3.24402 3.29314 3.49033 3.57794 3.92769 4.01561 4.08231 4.13897 4.30169 4.50910 4.52025 4.55136 4.57020 4.65186 4.73137 4.74138 4.79868 4.87735 4.93801 4.95628 5.09099 5.27070 5.34473 5.57239 5.62198 5.63340 6.02300 6.27271 6.33619 6.35293 6.52184 7.07124 7.16017 7.43961 7.75532 8.28195 9.14906 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.036302 B = 0.002463 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.130221 B =11366.901562 C =11780.702169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.638 5.638 3 C 0.104 3.896 4 C 0.111 3.889 5 H 0.166 0.834 6 C 0.501 3.499 7 O -0.577 6.577 8 N -0.699 5.699 9 C 0.141 3.859 10 C 0.081 3.919 11 H 0.076 0.924 12 C 0.114 3.886 13 N -0.613 5.613 14 C -0.265 4.265 15 H 0.073 0.927 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.289 1.289 20 H -0.266 1.266 21 H -0.291 1.291 22 C 0.141 3.859 23 C 0.056 3.944 24 O -0.386 6.386 25 N -0.715 5.715 26 C 0.691 3.309 27 O -0.636 6.636 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.421 0.579 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.014 0.986 38 H 0.251 0.749 39 H -0.004 1.004 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.055 0.945 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 -9.168 -15.204 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.376 5.376 3 C -0.019 4.019 4 C 0.002 3.998 5 H 0.183 0.817 6 C 0.286 3.714 7 O -0.456 6.456 8 N -0.351 5.351 9 C 0.016 3.984 10 C 0.022 3.978 11 H 0.093 0.907 12 C -0.013 4.013 13 N -0.338 5.338 14 C -0.394 4.394 15 H 0.091 0.909 16 C -0.246 4.246 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.216 1.216 20 H -0.190 1.190 21 H -0.218 1.218 22 C 0.015 3.985 23 C -0.022 4.022 24 O -0.305 6.305 25 N -0.375 5.375 26 C 0.391 3.609 27 O -0.518 6.518 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.159 0.841 33 H 0.259 0.741 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.032 0.968 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -11.593 -10.131 -14.455 21.118 hybrid contribution 1.541 0.789 0.564 1.820 sum -10.052 -9.342 -13.891 19.527 Atomic orbital electron populations 1.21597 0.74157 1.03703 1.03107 1.47213 1.07363 1.05610 1.77435 1.22619 0.84636 0.88134 1.06515 1.22121 0.98140 0.81763 0.97807 0.81689 1.21279 0.79050 0.81656 0.89408 1.90758 1.60418 1.54253 1.40127 1.45726 1.54974 1.14936 1.19482 1.21163 0.96872 0.92199 0.88147 1.22536 0.88164 0.88446 0.98703 0.90662 1.21543 0.98096 0.85995 0.95617 1.44345 1.04086 1.01531 1.83824 1.19545 0.84330 0.97761 1.37813 0.90947 1.25814 1.00997 0.99608 0.98193 1.70193 1.34910 1.11759 1.41359 0.85233 0.79603 0.77392 0.78034 1.21635 1.19043 1.21759 1.21341 0.88267 0.94641 0.94259 1.23135 0.99858 0.82168 0.96993 1.87797 1.31366 1.17979 1.93382 1.44875 1.06251 1.07567 1.78786 1.16176 0.82601 0.84707 0.77459 1.90912 1.76890 1.23162 1.60833 0.90836 0.92418 0.88154 0.89390 0.84137 0.74128 0.89517 0.92224 0.91118 0.96842 0.93972 0.98575 0.91581 0.87172 0.92688 0.72309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.43 11.03 127.77 1.41 2.84 16 2 N -0.64 -10.86 3.36 -863.43 -2.90 -13.76 16 3 C 0.10 1.00 7.32 86.65 0.63 1.63 16 4 C 0.11 1.32 4.17 44.52 0.19 1.50 16 5 H 0.17 0.46 8.14 -2.39 -0.02 0.44 16 6 C 0.50 9.71 6.95 87.66 0.61 10.32 16 7 O -0.58 -17.47 16.56 -3.02 -0.05 -17.52 16 8 N -0.70 -11.85 5.50 -463.07 -2.55 -14.40 16 9 C 0.14 3.38 5.34 86.38 0.46 3.84 16 10 C 0.08 2.31 2.80 30.55 0.09 2.39 16 11 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 12 C 0.11 4.36 6.00 86.21 0.52 4.88 16 13 N -0.61 -29.16 3.05 -698.34 -2.13 -31.29 16 14 C -0.26 -13.83 9.65 84.04 0.81 -13.02 16 15 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 16 C -0.05 -2.71 4.94 84.86 0.42 -2.30 16 17 N -0.94 -53.55 11.15 21.65 0.24 -53.31 16 18 Si 0.97 42.80 29.59 68.60 2.03 44.83 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 22 C 0.14 6.35 5.45 86.35 0.47 6.82 16 23 C 0.06 1.81 6.98 72.08 0.50 2.32 16 24 O -0.39 -11.69 10.33 -148.98 -1.54 -13.23 16 25 N -0.71 -13.55 5.60 -460.35 -2.58 -16.13 16 26 C 0.69 17.11 8.60 179.57 1.54 18.65 16 27 O -0.64 -21.74 17.53 -4.00 -0.07 -21.81 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.96 7.91 -2.38 -0.02 0.94 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.92 7.73 -2.39 -0.02 0.90 16 32 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.42 4.57 8.47 -92.70 -0.79 3.78 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 37 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.21 16 40 H 0.07 3.35 6.15 -2.39 -0.01 3.33 16 41 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.43 7.86 8.96 -92.70 -0.83 7.03 16 Total: -1.00 -81.06 356.17 -2.47 -83.53 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -0.57 Total: 13.21 kcal Atomic # 6 Polarization: 32.23 SS G_CDS: 7.65 Total: 39.89 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -9.92 Total: -128.90 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -1.66 Total: -52.56 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -81.06 -2.47 -83.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035477652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.762 kcal (2) G-P(sol) polarization free energy of solvation -81.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds