Wall clock time and date at job start Fri Apr 10 2020 18:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47335 * 2 1 4 4 C 1.50696 * 109.54309 * 304.67971 * 3 2 1 5 5 O 1.21283 * 119.99701 * 112.49181 * 4 3 2 6 6 N 1.34774 * 120.00438 * 292.49494 * 4 3 2 7 7 C 1.46498 * 120.00194 * 185.26221 * 6 4 3 8 8 H 1.08995 * 110.88974 * 31.11902 * 7 6 4 9 9 C 1.55127 * 111.22680 * 267.20292 * 7 6 4 10 10 N 1.47426 * 104.72431 * 279.17845 * 9 7 6 11 11 C 1.36939 * 125.65073 * 155.81430 * 10 9 7 12 12 H 1.08000 * 119.99741 * 352.85648 * 11 10 9 13 13 C 1.38806 * 120.00059 * 172.85522 * 11 10 9 14 14 N 1.31625 * 119.99807 * 164.97004 * 13 11 10 15 15 Si 1.86795 * 119.99962 * 344.97274 * 13 11 10 16 16 H 1.48508 * 109.47142 * 185.37407 * 15 13 11 17 17 H 1.48497 * 109.47396 * 305.37179 * 15 13 11 18 18 H 1.48502 * 109.47501 * 65.37688 * 15 13 11 19 19 C 1.47022 * 108.70181 * 335.55203 * 10 9 7 20 20 C 1.54326 * 107.27063 * 1.28795 * 19 10 9 21 21 H 1.09006 * 110.71666 * 263.82826 * 20 19 10 22 22 O 1.42891 * 110.72079 * 140.73642 * 20 19 10 23 23 C 1.53174 * 109.54308 * 64.86096 * 3 2 1 24 24 C 1.53284 * 109.06408 * 176.85459 * 23 3 2 25 25 O 1.42907 * 109.45883 * 302.44231 * 24 23 3 26 26 C 1.42905 * 114.09613 * 61.15692 * 25 24 23 27 27 C 1.53096 * 109.41815 * 298.84225 * 26 25 24 28 28 H 1.09002 * 109.46749 * 64.31490 * 1 2 3 29 29 H 1.08995 * 109.47248 * 184.31068 * 1 2 3 30 30 H 1.08995 * 109.47036 * 304.31864 * 1 2 3 31 31 H 1.08996 * 109.47092 * 239.99544 * 2 1 3 32 32 H 1.09001 * 109.46773 * 120.00121 * 2 1 3 33 33 H 0.97004 * 119.99932 * 5.25719 * 6 4 3 34 34 H 1.09002 * 110.50037 * 160.33500 * 9 7 6 35 35 H 1.09006 * 110.33865 * 37.94164 * 9 7 6 36 36 H 0.96998 * 120.00155 * 354.92357 * 14 13 11 37 37 H 1.08997 * 109.88143 * 120.70563 * 19 10 9 38 38 H 1.09007 * 109.88161 * 241.86873 * 19 10 9 39 39 H 0.96704 * 114.00545 * 61.44926 * 22 20 19 40 40 H 1.09002 * 109.52014 * 296.84082 * 23 3 2 41 41 H 1.08995 * 109.52296 * 57.02974 * 23 3 2 42 42 H 1.08997 * 109.45979 * 182.44858 * 24 23 3 43 43 H 1.08994 * 109.46962 * 62.43992 * 24 23 3 44 44 H 1.08998 * 109.47948 * 178.86325 * 26 25 24 45 45 H 1.09000 * 109.48811 * 58.83089 * 26 25 24 46 46 H 1.09003 * 109.52199 * 297.70328 * 27 26 25 47 47 H 1.08998 * 109.52197 * 177.51497 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4463 2.1871 -1.1678 5 8 0.6533 3.0843 -0.9750 6 7 1.7964 1.8561 -2.4265 7 6 1.3099 2.6527 -3.5557 8 1 1.1759 3.6951 -3.2668 9 6 -0.0045 2.0649 -4.1328 10 7 0.4306 0.9571 -5.0028 11 6 -0.3282 -0.1274 -5.3540 12 1 -1.2941 -0.2816 -4.8961 13 6 0.1440 -1.0284 -6.2984 14 7 -0.4257 -2.2081 -6.4250 15 14 1.5880 -0.5666 -7.3896 16 1 1.8133 -1.6384 -8.3925 17 1 1.2925 0.7103 -8.0878 18 1 2.8064 -0.4046 -6.5562 19 6 1.8121 1.2126 -5.4360 20 6 2.2635 2.5314 -4.7736 21 1 2.1277 3.3714 -5.4549 22 8 3.6246 2.4432 -4.3478 23 6 1.6328 2.1300 1.3068 24 6 2.2157 3.5474 1.3296 25 8 3.6363 3.4802 1.1892 26 6 4.0742 2.8884 -0.0356 27 6 3.5677 1.4457 -0.1134 28 1 -0.3633 0.4454 -0.9262 29 1 -0.3633 -1.0247 0.0772 30 1 -0.3633 0.5794 0.8487 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3705 1.0904 -2.5848 34 1 -0.5363 2.8178 -4.7146 35 1 -0.6370 1.6895 -3.3283 36 1 -1.1264 -2.4768 -5.8104 37 1 2.4585 0.3960 -5.1144 38 1 1.8481 1.3114 -6.5210 39 1 4.2527 2.2903 -5.0670 40 1 0.5456 2.1799 1.3685 41 1 2.0209 1.5631 2.1529 42 1 1.9663 4.0274 2.2759 43 1 1.7962 4.1261 0.5067 44 1 5.1635 2.8936 -0.0727 45 1 3.6790 3.4582 -0.8765 46 1 3.9949 0.8651 0.7042 47 1 3.8632 1.0068 -1.0664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220623975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:26 Heat of formation + Delta-G solvation = -102.727438 kcal Electronic energy + Delta-G solvation = -28947.283709 eV Core-core repulsion = 25130.942092 eV Total energy + Delta-G solvation = -3816.341617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.99791 -38.99896 -37.67964 -35.48677 -35.37340 -33.92580 -32.05150 -31.25411 -30.63731 -28.89918 -27.96236 -25.67634 -24.05289 -23.73813 -22.64571 -21.66231 -21.09874 -20.06760 -19.28088 -17.63523 -17.16169 -16.80638 -16.24771 -16.06723 -15.84746 -15.43837 -15.18622 -14.71636 -14.50546 -14.05787 -13.84952 -13.82320 -13.39130 -13.18968 -12.88615 -12.85787 -12.45073 -12.37222 -12.25245 -12.06505 -11.99744 -11.46878 -11.38669 -11.31721 -11.30498 -11.01971 -10.84880 -10.44171 -10.40911 -10.38091 -10.03203 -9.63385 -9.39196 -9.29420 -9.06822 -8.94231 -8.65150 -7.13711 -6.38637 -3.29944 2.82258 3.25549 3.33373 3.37586 3.60022 3.85909 4.16831 4.42011 4.52091 4.53213 4.66980 4.80018 4.92472 4.97674 5.02957 5.16510 5.18427 5.24032 5.35002 5.39898 5.40010 5.40487 5.52681 5.55554 5.68602 5.73242 5.75450 5.82814 5.87119 5.91324 5.96655 6.01580 6.04773 6.11448 6.16013 6.30084 6.36063 6.44547 6.46557 6.82320 7.16732 7.52105 7.66778 7.78956 8.24270 8.44665 8.95180 9.45203 10.10600 11.11703 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.004849 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.165262 B = 5773.346394 C = 6354.085108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C -0.078 4.078 4 C 0.528 3.472 5 O -0.548 6.548 6 N -0.692 5.692 7 C 0.142 3.858 8 H 0.098 0.902 9 C 0.125 3.875 10 N -0.605 5.605 11 C -0.320 4.320 12 H 0.080 0.920 13 C -0.023 4.023 14 N -0.927 5.927 15 Si 1.072 2.928 16 H -0.301 1.301 17 H -0.299 1.299 18 H -0.288 1.288 19 C 0.073 3.927 20 C 0.083 3.917 21 H 0.077 0.923 22 O -0.558 6.558 23 C -0.128 4.128 24 C 0.052 3.948 25 O -0.387 6.387 26 C 0.061 3.939 27 C -0.144 4.144 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.405 0.595 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.035 0.965 39 H 0.379 0.621 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.474 8.833 12.279 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.146 4.146 3 C -0.081 4.081 4 C 0.315 3.685 5 O -0.426 6.426 6 N -0.342 5.342 7 C 0.036 3.964 8 H 0.115 0.885 9 C -0.002 4.002 10 N -0.334 5.334 11 C -0.447 4.447 12 H 0.098 0.902 13 C -0.222 4.222 14 N -0.568 5.568 15 Si 0.906 3.094 16 H -0.229 1.229 17 H -0.228 1.228 18 H -0.215 1.215 19 C -0.052 4.052 20 C 0.023 3.977 21 H 0.095 0.905 22 O -0.363 6.363 23 C -0.166 4.166 24 C -0.024 4.024 25 O -0.305 6.305 26 C -0.016 4.016 27 C -0.181 4.181 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.240 0.760 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.226 0.774 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.633 9.040 11.844 17.742 hybrid contribution -0.781 -0.118 0.165 0.806 sum 8.852 8.922 12.008 17.383 Atomic orbital electron populations 1.21833 0.94990 1.01986 1.02499 1.21554 0.96891 0.93243 1.02956 1.20935 0.95996 0.96863 0.94343 1.20295 0.81034 0.83322 0.83888 1.90633 1.34527 1.32114 1.85350 1.45530 1.51493 1.32363 1.04782 1.22207 0.93654 0.95786 0.84748 0.88457 1.22057 0.93654 0.90692 0.93763 1.44680 1.09317 1.22780 1.56660 1.20174 1.01912 0.99397 1.23194 0.90217 1.25786 1.03597 0.93834 0.98972 1.70881 1.27482 1.18052 1.40424 0.83844 0.75866 0.73486 0.76193 1.22931 1.22832 1.21519 1.22808 0.89224 0.95795 0.97391 1.23181 0.81662 0.97416 0.95410 0.90547 1.86440 1.16117 1.95545 1.38161 1.22085 1.02388 0.96782 0.95328 1.22788 0.80628 0.96254 1.02761 1.87880 1.22210 1.81405 1.39052 1.22548 0.99793 0.92156 0.87103 1.22280 0.93449 0.98733 1.03688 0.92243 0.92310 0.92412 0.91086 0.90927 0.75985 0.94688 0.92623 0.92789 0.92442 0.94761 0.77377 0.89748 0.90760 0.89231 0.91219 0.88767 0.92974 0.90060 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.35 37.16 0.35 -1.73 16 2 C -0.11 -1.30 4.99 -26.73 -0.13 -1.43 16 3 C -0.08 -0.97 0.43 -155.48 -0.07 -1.04 16 4 C 0.53 8.07 3.62 -10.99 -0.04 8.03 16 5 O -0.55 -9.75 13.85 5.56 0.08 -9.68 16 6 N -0.69 -10.79 4.61 -51.62 -0.24 -11.03 16 7 C 0.14 2.36 3.27 -65.66 -0.21 2.14 16 8 H 0.10 1.58 7.62 -51.93 -0.40 1.18 16 9 C 0.13 2.48 6.95 -2.41 -0.02 2.47 16 10 N -0.61 -13.98 3.35 -169.93 -0.57 -14.55 16 11 C -0.32 -8.84 10.57 -15.06 -0.16 -9.00 16 12 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 13 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 14 N -0.93 -28.47 13.70 55.49 0.76 -27.71 16 15 Si 1.07 25.55 24.51 -169.99 -4.17 21.39 16 16 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.30 -6.88 6.70 56.52 0.38 -6.50 16 18 H -0.29 -6.08 5.34 56.52 0.30 -5.78 16 19 C 0.07 1.45 4.37 -3.06 -0.01 1.43 16 20 C 0.08 1.29 4.11 -24.90 -0.10 1.19 16 21 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 22 O -0.56 -7.31 12.69 -35.23 -0.45 -7.75 16 23 C -0.13 -1.51 4.25 -26.49 -0.11 -1.62 16 24 C 0.05 0.65 6.56 37.30 0.24 0.89 16 25 O -0.39 -5.08 10.77 -35.23 -0.38 -5.46 16 26 C 0.06 0.71 6.62 37.21 0.25 0.96 16 27 C -0.14 -1.57 4.80 -26.59 -0.13 -1.70 16 28 H 0.06 0.97 7.26 -51.93 -0.38 0.59 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 31 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 6.24 7.44 -40.82 -0.30 5.94 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.26 8.00 8.73 -40.82 -0.36 7.64 16 37 H 0.06 1.19 6.27 -51.93 -0.33 0.87 16 38 H 0.04 0.72 4.04 -51.93 -0.21 0.51 16 39 H 0.38 3.51 9.11 45.56 0.42 3.93 16 40 H 0.08 1.04 6.42 -51.93 -0.33 0.71 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.01 6.09 -51.93 -0.32 0.69 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.69 7.38 -51.93 -0.38 0.31 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.85 7.21 -51.93 -0.37 0.48 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -32.51 351.43 -6.77 -39.28 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.86 Total: 10.35 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.24 Total: -0.14 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.05 Total: -53.28 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.75 Total: -22.89 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -4.17 Total: 21.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.51 -6.77 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220623975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.448 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds