Wall clock time and date at job start Fri Apr 10 2020 18:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47335 * 2 1 4 4 C 1.50696 * 109.54309 * 304.67971 * 3 2 1 5 5 O 1.21283 * 119.99701 * 112.49181 * 4 3 2 6 6 N 1.34774 * 120.00438 * 292.49494 * 4 3 2 7 7 C 1.46498 * 120.00194 * 185.26221 * 6 4 3 8 8 H 1.08995 * 110.88974 * 31.11902 * 7 6 4 9 9 C 1.55127 * 111.22680 * 267.20292 * 7 6 4 10 10 N 1.47426 * 104.72431 * 279.17845 * 9 7 6 11 11 C 1.36939 * 125.65073 * 155.81430 * 10 9 7 12 12 H 1.08000 * 119.99741 * 352.85648 * 11 10 9 13 13 C 1.38806 * 120.00059 * 172.85522 * 11 10 9 14 14 N 1.31625 * 119.99807 * 164.97004 * 13 11 10 15 15 Si 1.86795 * 119.99962 * 344.97274 * 13 11 10 16 16 H 1.48508 * 109.47142 * 185.37407 * 15 13 11 17 17 H 1.48497 * 109.47396 * 305.37179 * 15 13 11 18 18 H 1.48502 * 109.47501 * 65.37688 * 15 13 11 19 19 C 1.47022 * 108.70181 * 335.55203 * 10 9 7 20 20 C 1.54326 * 107.27063 * 1.28795 * 19 10 9 21 21 H 1.09006 * 110.71666 * 263.82826 * 20 19 10 22 22 O 1.42891 * 110.72079 * 140.73642 * 20 19 10 23 23 C 1.53174 * 109.54308 * 64.86096 * 3 2 1 24 24 C 1.53284 * 109.06408 * 176.85459 * 23 3 2 25 25 O 1.42907 * 109.45883 * 302.44231 * 24 23 3 26 26 C 1.42905 * 114.09613 * 61.15692 * 25 24 23 27 27 C 1.53096 * 109.41815 * 298.84225 * 26 25 24 28 28 H 1.09002 * 109.46749 * 64.31490 * 1 2 3 29 29 H 1.08995 * 109.47248 * 184.31068 * 1 2 3 30 30 H 1.08995 * 109.47036 * 304.31864 * 1 2 3 31 31 H 1.08996 * 109.47092 * 239.99544 * 2 1 3 32 32 H 1.09001 * 109.46773 * 120.00121 * 2 1 3 33 33 H 0.97004 * 119.99932 * 5.25719 * 6 4 3 34 34 H 1.09002 * 110.50037 * 160.33500 * 9 7 6 35 35 H 1.09006 * 110.33865 * 37.94164 * 9 7 6 36 36 H 0.96998 * 120.00155 * 354.92357 * 14 13 11 37 37 H 1.08997 * 109.88143 * 120.70563 * 19 10 9 38 38 H 1.09007 * 109.88161 * 241.86873 * 19 10 9 39 39 H 0.96704 * 114.00545 * 61.44926 * 22 20 19 40 40 H 1.09002 * 109.52014 * 296.84082 * 23 3 2 41 41 H 1.08995 * 109.52296 * 57.02974 * 23 3 2 42 42 H 1.08997 * 109.45979 * 182.44858 * 24 23 3 43 43 H 1.08994 * 109.46962 * 62.43992 * 24 23 3 44 44 H 1.08998 * 109.47948 * 178.86325 * 26 25 24 45 45 H 1.09000 * 109.48811 * 58.83089 * 26 25 24 46 46 H 1.09003 * 109.52199 * 297.70328 * 27 26 25 47 47 H 1.08998 * 109.52197 * 177.51497 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4463 2.1871 -1.1678 5 8 0.6533 3.0843 -0.9750 6 7 1.7964 1.8561 -2.4265 7 6 1.3099 2.6527 -3.5557 8 1 1.1759 3.6951 -3.2668 9 6 -0.0045 2.0649 -4.1328 10 7 0.4306 0.9571 -5.0028 11 6 -0.3282 -0.1274 -5.3540 12 1 -1.2941 -0.2816 -4.8961 13 6 0.1440 -1.0284 -6.2984 14 7 -0.4257 -2.2081 -6.4250 15 14 1.5880 -0.5666 -7.3896 16 1 1.8133 -1.6384 -8.3925 17 1 1.2925 0.7103 -8.0878 18 1 2.8064 -0.4046 -6.5562 19 6 1.8121 1.2126 -5.4360 20 6 2.2635 2.5314 -4.7736 21 1 2.1277 3.3714 -5.4549 22 8 3.6246 2.4432 -4.3478 23 6 1.6328 2.1300 1.3068 24 6 2.2157 3.5474 1.3296 25 8 3.6363 3.4802 1.1892 26 6 4.0742 2.8884 -0.0356 27 6 3.5677 1.4457 -0.1134 28 1 -0.3633 0.4454 -0.9262 29 1 -0.3633 -1.0247 0.0772 30 1 -0.3633 0.5794 0.8487 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3705 1.0904 -2.5848 34 1 -0.5363 2.8178 -4.7146 35 1 -0.6370 1.6895 -3.3283 36 1 -1.1264 -2.4768 -5.8104 37 1 2.4585 0.3960 -5.1144 38 1 1.8481 1.3114 -6.5210 39 1 4.2527 2.2903 -5.0670 40 1 0.5456 2.1799 1.3685 41 1 2.0209 1.5631 2.1529 42 1 1.9663 4.0274 2.2759 43 1 1.7962 4.1261 0.5067 44 1 5.1635 2.8936 -0.0727 45 1 3.6790 3.4582 -0.8765 46 1 3.9949 0.8651 0.7042 47 1 3.8632 1.0068 -1.0664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220623975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:24 Heat of formation + Delta-G solvation = -129.787189 kcal Electronic energy + Delta-G solvation = -28948.457108 eV Core-core repulsion = 25130.942092 eV Total energy + Delta-G solvation = -3817.515016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.11282 -40.30992 -38.85129 -36.79208 -36.48101 -35.40356 -33.92927 -32.26788 -31.63734 -30.50178 -29.49312 -26.77722 -25.79028 -24.68135 -23.84465 -22.76809 -22.62300 -21.49986 -20.48753 -19.64416 -18.34674 -17.93293 -17.58827 -17.07529 -16.95065 -16.85530 -16.28719 -16.04599 -15.61623 -15.44673 -15.29888 -15.09434 -14.91732 -14.48331 -14.28569 -14.14691 -13.89842 -13.48383 -13.32232 -13.28663 -13.13799 -13.02070 -12.90609 -12.48307 -12.33050 -12.28621 -12.06066 -12.04174 -11.57394 -11.41329 -11.36083 -11.28533 -11.07124 -10.71262 -10.59522 -10.36729 -10.07503 -9.10950 -8.66954 -5.48985 1.36076 1.50274 1.62415 1.72004 2.14866 2.55693 2.92667 2.94778 3.10902 3.31329 3.46711 3.51056 3.60441 3.64844 3.75376 3.98302 4.02369 4.12328 4.22281 4.26984 4.38444 4.39616 4.41972 4.44196 4.55900 4.59368 4.67999 4.75999 4.77187 4.79678 4.82213 4.86806 4.94520 4.96794 5.01300 5.08733 5.12446 5.19174 5.29577 5.45873 5.52362 6.04726 6.23028 6.55349 6.78055 6.82345 7.23471 7.37667 8.02905 8.85427 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.004849 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.165262 B = 5773.346394 C = 6354.085108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.075 4.075 4 C 0.525 3.475 5 O -0.577 6.577 6 N -0.692 5.692 7 C 0.148 3.852 8 H 0.105 0.895 9 C 0.124 3.876 10 N -0.621 5.621 11 C -0.310 4.310 12 H 0.038 0.962 13 C -0.080 4.080 14 N -0.964 5.964 15 Si 1.111 2.889 16 H -0.317 1.317 17 H -0.282 1.282 18 H -0.239 1.239 19 C 0.066 3.934 20 C 0.107 3.893 21 H 0.105 0.895 22 O -0.554 6.554 23 C -0.125 4.125 24 C 0.053 3.947 25 O -0.395 6.395 26 C 0.059 3.941 27 C -0.138 4.138 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.407 0.593 34 H 0.043 0.957 35 H 0.027 0.973 36 H 0.245 0.755 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.401 0.599 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.044 0.956 44 H 0.116 0.884 45 H 0.033 0.967 46 H 0.102 0.898 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.865 10.062 13.087 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.078 4.078 4 C 0.313 3.687 5 O -0.457 6.457 6 N -0.341 5.341 7 C 0.042 3.958 8 H 0.123 0.877 9 C -0.003 4.003 10 N -0.350 5.350 11 C -0.438 4.438 12 H 0.056 0.944 13 C -0.272 4.272 14 N -0.608 5.608 15 Si 0.938 3.062 16 H -0.247 1.247 17 H -0.210 1.210 18 H -0.163 1.163 19 C -0.059 4.059 20 C 0.046 3.954 21 H 0.122 0.878 22 O -0.362 6.362 23 C -0.163 4.163 24 C -0.023 4.023 25 O -0.314 6.314 26 C -0.018 4.018 27 C -0.175 4.175 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.243 0.757 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.252 0.748 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.062 0.938 44 H 0.134 0.866 45 H 0.051 0.949 46 H 0.120 0.880 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.058 10.308 12.683 20.920 hybrid contribution -1.959 -0.469 -0.006 2.014 sum 11.099 9.839 12.677 19.512 Atomic orbital electron populations 1.21807 0.96494 1.02006 1.00791 1.21560 0.95435 0.93190 1.04017 1.20977 0.97187 0.96490 0.93175 1.20891 0.80374 0.82933 0.84464 1.90619 1.35813 1.33538 1.85756 1.45546 1.51373 1.32365 1.04812 1.22059 0.92322 0.95828 0.85640 0.87696 1.22130 0.95526 0.89939 0.92671 1.44621 1.10765 1.22449 1.57166 1.19979 1.00873 1.00797 1.22137 0.94369 1.27215 1.06280 0.93173 1.00519 1.71004 1.28599 1.19977 1.41198 0.83444 0.74790 0.73280 0.74662 1.24682 1.21014 1.16322 1.22999 0.86880 0.98168 0.97813 1.22916 0.82576 0.95713 0.94190 0.87752 1.86421 1.15066 1.95361 1.39333 1.22085 1.01825 0.96685 0.95685 1.22771 0.80480 0.96455 1.02636 1.87873 1.22238 1.81690 1.39564 1.22652 1.00979 0.92150 0.85984 1.22278 0.91800 0.98566 1.04884 0.96143 0.91861 0.91448 0.91847 0.87940 0.75747 0.93960 0.95432 0.94604 0.92939 0.94435 0.74831 0.90786 0.88468 0.87537 0.93791 0.86605 0.94905 0.87958 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.35 71.98 0.67 -3.44 16 2 C -0.10 -2.32 4.99 30.59 0.15 -2.17 16 3 C -0.08 -1.73 0.43 -52.81 -0.02 -1.75 16 4 C 0.53 15.77 3.62 87.66 0.32 16.09 16 5 O -0.58 -20.75 13.85 -3.04 -0.04 -20.79 16 6 N -0.69 -20.83 4.61 -435.62 -2.01 -22.84 16 7 C 0.15 4.69 3.27 46.46 0.15 4.85 16 8 H 0.11 3.23 7.62 -2.39 -0.02 3.21 16 9 C 0.12 4.95 6.95 86.93 0.60 5.55 16 10 N -0.62 -28.60 3.35 -691.53 -2.32 -30.92 16 11 C -0.31 -17.68 10.57 84.03 0.89 -16.79 16 12 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 13 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 14 N -0.96 -61.39 13.70 21.65 0.30 -61.09 16 15 Si 1.11 50.40 24.51 68.60 1.68 52.08 16 16 H -0.32 -15.21 7.11 99.48 0.71 -14.50 16 17 H -0.28 -11.96 6.70 99.48 0.67 -11.29 16 18 H -0.24 -8.95 5.34 99.48 0.53 -8.41 16 19 C 0.07 2.42 4.37 86.73 0.38 2.80 16 20 C 0.11 2.90 4.11 31.78 0.13 3.03 16 21 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 22 O -0.55 -11.99 12.69 -148.98 -1.89 -13.88 16 23 C -0.13 -2.71 4.25 30.75 0.13 -2.57 16 24 C 0.05 1.24 6.56 72.08 0.47 1.71 16 25 O -0.39 -9.41 10.77 -148.98 -1.60 -11.01 16 26 C 0.06 1.22 6.62 72.01 0.48 1.70 16 27 C -0.14 -2.57 4.80 30.69 0.15 -2.43 16 28 H 0.02 0.68 7.26 -2.39 -0.02 0.66 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.64 6.44 -2.39 -0.02 1.62 16 31 H 0.06 1.52 8.07 -2.39 -0.02 1.50 16 32 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.41 11.86 7.44 -92.71 -0.69 11.17 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.25 15.85 8.73 -92.71 -0.81 15.04 16 37 H 0.05 1.99 6.27 -2.39 -0.01 1.98 16 38 H 0.04 1.42 4.04 -2.38 -0.01 1.41 16 39 H 0.40 5.21 9.11 -74.05 -0.67 4.54 16 40 H 0.07 1.76 6.42 -2.39 -0.02 1.74 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.04 1.26 6.09 -2.39 -0.01 1.25 16 44 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.03 0.81 7.38 -2.39 -0.02 0.79 16 46 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.09 1.54 7.21 -2.39 -0.02 1.52 16 Total: -1.00 -74.30 351.43 -1.54 -75.84 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -0.63 Total: 30.20 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 4.97 Total: 2.41 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -4.03 Total: -114.85 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -3.54 Total: -45.69 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 1.68 Total: 52.08 kcal Total: -74.30 -1.54 -75.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220623975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.946 kcal (2) G-P(sol) polarization free energy of solvation -74.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds