Wall clock time and date at job start Fri Apr 10 2020 18:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47028 * 125.64604 * 179.72243 * 9 7 2 11 11 C 1.54322 * 107.26990 * 181.02395 * 10 9 7 12 12 H 1.08998 * 110.72399 * 140.55655 * 11 10 9 13 13 N 1.46498 * 110.72176 * 263.65157 * 11 10 9 14 14 C 1.34775 * 120.00398 * 273.55119 * 13 11 10 15 15 O 1.21281 * 119.99493 * 359.97438 * 14 13 11 16 16 C 1.50694 * 120.00469 * 179.97438 * 14 13 11 17 17 C 1.52995 * 109.47515 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47596 * 179.97438 * 17 16 14 19 19 H 1.09007 * 109.52324 * 54.99998 * 18 17 16 20 20 C 1.53174 * 109.52514 * 175.12217 * 18 17 16 21 21 C 1.53178 * 109.03725 * 176.88536 * 20 18 17 22 22 C 1.53089 * 109.16778 * 303.02332 * 21 20 18 23 23 O 1.42905 * 109.41479 * 57.60284 * 22 21 20 24 24 C 1.42907 * 114.15631 * 298.88396 * 23 22 21 25 25 C 1.55157 * 102.94433 * 22.19117 * 11 10 9 26 26 H 1.09000 * 111.00364 * 82.61301 * 25 11 10 27 27 O 1.42898 * 111.00759 * 206.42402 * 25 11 10 28 28 C 1.47424 * 125.65153 * 359.41933 * 9 7 2 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.88337 * 300.43606 * 10 9 7 31 31 H 1.08995 * 109.88041 * 61.60527 * 10 9 7 32 32 H 0.97008 * 119.99884 * 93.54320 * 13 11 10 33 33 H 1.09002 * 109.47307 * 299.99794 * 16 14 13 34 34 H 1.09003 * 109.47112 * 59.99450 * 16 14 13 35 35 H 1.09010 * 109.47097 * 300.00064 * 17 16 14 36 36 H 1.09003 * 109.47232 * 59.99704 * 17 16 14 37 37 H 1.09003 * 109.54751 * 296.75493 * 20 18 17 38 38 H 1.09005 * 109.54219 * 57.02161 * 20 18 17 39 39 H 1.08997 * 109.52487 * 62.93095 * 21 20 18 40 40 H 1.09007 * 109.52640 * 183.05410 * 21 20 18 41 41 H 1.08992 * 109.48663 * 177.59111 * 22 21 20 42 42 H 1.09003 * 109.47651 * 297.61530 * 22 21 20 43 43 H 1.09005 * 109.42375 * 301.10788 * 24 23 22 44 44 H 1.08999 * 109.53911 * 181.07442 * 24 23 22 45 45 H 0.96701 * 113.99925 * 180.02562 * 27 25 11 46 46 H 1.09007 * 110.36232 * 274.74242 * 28 9 7 47 47 H 1.09000 * 110.36555 * 37.06453 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 1.9317 -3.7275 -0.0138 11 6 0.7782 -4.7522 -0.0455 12 1 1.0233 -5.5887 -0.6999 13 7 0.4693 -5.2269 1.3056 14 6 1.1502 -6.2667 1.8267 15 8 2.0184 -6.8097 1.1769 16 6 0.8328 -6.7546 3.2167 17 6 1.7419 -7.9356 3.5627 18 6 1.4201 -8.4305 4.9741 19 1 0.3580 -8.6651 5.0446 20 6 2.2428 -9.6868 5.2760 21 6 1.9710 -10.1276 6.7176 22 6 2.3031 -8.9736 7.6672 23 8 1.5265 -7.8278 7.3120 24 6 1.7720 -7.3415 5.9909 25 6 -0.4022 -3.9290 -0.6255 26 1 -0.3536 -3.8898 -1.7138 27 8 -1.6570 -4.4562 -0.1903 28 6 -0.1416 -2.5331 -0.0011 29 1 -0.4850 0.8401 0.0004 30 1 2.5575 -3.8464 -0.8983 31 1 2.5286 -3.8689 0.8871 32 1 -0.2253 -4.7927 1.8252 33 1 0.9968 -5.9480 3.9312 34 1 -0.2087 -7.0731 3.2610 35 1 1.5775 -8.7422 2.8481 36 1 2.7835 -7.6175 3.5183 37 1 1.9556 -10.4843 4.5906 38 1 3.3034 -9.4657 5.1562 39 1 0.9201 -10.3962 6.8244 40 1 2.5935 -10.9894 6.9586 41 1 2.0711 -9.2669 8.6909 42 1 3.3633 -8.7326 7.5894 43 1 2.8250 -7.0780 5.8914 44 1 1.1577 -6.4601 5.8068 45 1 -2.4244 -3.9743 -0.5279 46 1 -0.5227 -2.4944 1.0194 47 1 -0.6022 -1.7542 -0.6087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220650163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:29 Heat of formation + Delta-G solvation = -122.718627 kcal Electronic energy + Delta-G solvation = -26583.043926 eV Core-core repulsion = 22765.835427 eV Total energy + Delta-G solvation = -3817.208500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.96622 -39.39999 -37.81454 -35.25890 -35.05988 -33.72258 -32.93928 -31.69587 -29.92665 -28.36356 -27.09482 -25.31026 -25.14338 -24.29292 -22.01609 -20.50339 -20.33436 -20.19420 -19.69494 -17.30000 -16.99003 -16.65468 -16.56545 -16.09657 -15.59940 -15.40475 -14.91852 -14.83163 -14.57482 -14.08958 -13.98024 -13.51909 -13.35898 -13.01242 -12.87926 -12.80417 -12.44515 -12.35554 -12.24505 -11.88314 -11.52021 -11.38805 -11.34072 -11.13120 -10.95551 -10.91383 -10.89721 -10.75177 -10.45626 -10.20487 -10.07095 -9.88742 -9.65255 -9.47031 -9.22204 -8.78245 -8.56956 -6.94483 -5.75199 -3.17120 2.95970 3.34939 3.41133 3.43407 3.49039 3.66183 4.36484 4.45924 4.50222 4.55177 4.59087 4.66656 4.90252 4.96827 5.11454 5.14808 5.24252 5.27316 5.31357 5.36769 5.44749 5.47041 5.51313 5.57889 5.64003 5.66138 5.69643 5.71801 5.84393 5.88917 5.94366 6.08424 6.13466 6.22591 6.23676 6.50997 6.63080 6.97183 7.00549 7.24948 7.51449 7.68414 7.92662 8.03392 8.23093 8.58766 9.11706 9.72143 10.34890 11.28910 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.002775 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.512258 B =10088.707709 C =10923.187873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.127 3.873 11 C 0.144 3.856 12 H 0.089 0.911 13 N -0.699 5.699 14 C 0.511 3.489 15 O -0.553 6.553 16 C -0.143 4.143 17 C -0.095 4.095 18 C -0.123 4.123 19 H 0.080 0.920 20 C -0.118 4.118 21 C -0.156 4.156 22 C 0.059 3.941 23 O -0.384 6.384 24 C 0.061 3.939 25 C 0.063 3.937 26 H 0.070 0.930 27 O -0.566 6.566 28 C 0.128 3.872 29 H 0.252 0.748 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.405 0.595 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.378 0.622 46 H 0.021 0.979 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 -17.278 9.794 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.000 4.000 11 C 0.038 3.962 12 H 0.107 0.893 13 N -0.350 5.350 14 C 0.297 3.703 15 O -0.432 6.432 16 C -0.183 4.183 17 C -0.133 4.133 18 C -0.142 4.142 19 H 0.098 0.902 20 C -0.155 4.155 21 C -0.194 4.194 22 C -0.018 4.018 23 O -0.302 6.302 24 C -0.016 4.016 25 C 0.003 3.997 26 H 0.088 0.912 27 O -0.371 6.371 28 C 0.002 3.998 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.240 0.760 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.225 0.775 46 H 0.038 0.962 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.035 -17.776 9.747 20.273 hybrid contribution -0.046 1.396 -0.231 1.415 sum -0.081 -16.381 9.517 18.945 Atomic orbital electron populations 1.69747 1.04917 1.24782 1.57884 1.24791 0.95785 0.97814 1.02316 0.85957 0.78712 0.83333 0.77266 1.20466 1.21678 1.21713 1.19157 0.90636 0.82205 1.42858 0.90224 1.44354 1.01478 0.99901 1.87071 1.21747 0.93796 0.85443 0.99031 1.21964 0.94746 0.96061 0.83416 0.89341 1.45728 1.39166 1.33110 1.16956 1.20596 0.81465 0.79683 0.88528 1.90666 1.32440 1.57756 1.62338 1.21725 1.02073 0.99894 0.94588 1.21297 0.99977 0.97201 0.94793 1.21841 1.01101 0.95907 0.95332 0.90172 1.21632 1.00275 0.97440 0.96179 1.22197 1.02671 0.98691 0.95832 1.22570 0.94996 0.85725 0.98519 1.87937 1.65065 1.45772 1.31448 1.22773 1.00895 0.96288 0.81597 1.23750 0.82375 0.96044 0.97577 0.91171 1.86330 1.15586 1.58677 1.76486 1.22609 0.85589 0.92626 0.98954 0.93708 0.94696 0.95054 0.76013 0.88943 0.88931 0.90816 0.90993 0.91298 0.91652 0.91089 0.90999 0.89112 0.93277 0.92982 0.88493 0.77471 0.96151 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.93 10.08 55.49 0.56 -25.37 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.04 10.27 -15.06 -0.15 -6.19 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -14.99 3.39 -169.93 -0.58 -15.56 16 10 C 0.13 2.74 6.98 -3.06 -0.02 2.71 16 11 C 0.14 2.67 3.13 -66.10 -0.21 2.47 16 12 H 0.09 1.64 7.69 -51.93 -0.40 1.24 16 13 N -0.70 -11.61 4.78 -52.04 -0.25 -11.86 16 14 C 0.51 8.12 7.83 -10.99 -0.09 8.03 16 15 O -0.55 -10.58 15.71 5.56 0.09 -10.49 16 16 C -0.14 -1.62 5.46 -27.89 -0.15 -1.77 16 17 C -0.09 -1.01 3.98 -26.74 -0.11 -1.12 16 18 C -0.12 -1.11 2.39 -90.49 -0.22 -1.33 16 19 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 20 C -0.12 -0.96 5.31 -26.55 -0.14 -1.10 16 21 C -0.16 -1.14 6.14 -26.59 -0.16 -1.30 16 22 C 0.06 0.48 6.85 37.20 0.25 0.73 16 23 O -0.38 -4.14 10.76 -35.23 -0.38 -4.52 16 24 C 0.06 0.59 5.83 37.20 0.22 0.81 16 25 C 0.06 1.15 4.23 -24.47 -0.10 1.04 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 O -0.57 -8.86 12.64 -35.23 -0.45 -9.31 16 28 C 0.13 2.91 5.63 -2.41 -0.01 2.89 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 32 H 0.40 6.37 8.21 -40.82 -0.34 6.04 16 33 H 0.09 0.95 6.63 -51.93 -0.34 0.61 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.84 8.10 -51.92 -0.42 0.42 16 36 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.90 6.70 -51.93 -0.35 0.55 16 45 H 0.38 4.52 9.12 45.56 0.42 4.93 16 46 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 47 H 0.11 2.82 5.85 -51.93 -0.30 2.52 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -32.01 370.02 -8.63 -40.65 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.19 Total: 8.76 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.99 Total: 5.46 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.27 Total: -52.80 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.74 Total: -24.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.01 -8.63 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220650163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.071 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds