Wall clock time and date at job start Fri Apr 10 2020 18:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47028 * 125.64604 * 179.72243 * 9 7 2 11 11 C 1.54322 * 107.26990 * 181.02395 * 10 9 7 12 12 H 1.08998 * 110.72399 * 140.55655 * 11 10 9 13 13 N 1.46498 * 110.72176 * 263.65157 * 11 10 9 14 14 C 1.34775 * 120.00398 * 273.55119 * 13 11 10 15 15 O 1.21281 * 119.99493 * 359.97438 * 14 13 11 16 16 C 1.50694 * 120.00469 * 179.97438 * 14 13 11 17 17 C 1.52995 * 109.47515 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47596 * 179.97438 * 17 16 14 19 19 H 1.09007 * 109.52324 * 54.99998 * 18 17 16 20 20 C 1.53174 * 109.52514 * 175.12217 * 18 17 16 21 21 C 1.53178 * 109.03725 * 176.88536 * 20 18 17 22 22 C 1.53089 * 109.16778 * 303.02332 * 21 20 18 23 23 O 1.42905 * 109.41479 * 57.60284 * 22 21 20 24 24 C 1.42907 * 114.15631 * 298.88396 * 23 22 21 25 25 C 1.55157 * 102.94433 * 22.19117 * 11 10 9 26 26 H 1.09000 * 111.00364 * 82.61301 * 25 11 10 27 27 O 1.42898 * 111.00759 * 206.42402 * 25 11 10 28 28 C 1.47424 * 125.65153 * 359.41933 * 9 7 2 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.88337 * 300.43606 * 10 9 7 31 31 H 1.08995 * 109.88041 * 61.60527 * 10 9 7 32 32 H 0.97008 * 119.99884 * 93.54320 * 13 11 10 33 33 H 1.09002 * 109.47307 * 299.99794 * 16 14 13 34 34 H 1.09003 * 109.47112 * 59.99450 * 16 14 13 35 35 H 1.09010 * 109.47097 * 300.00064 * 17 16 14 36 36 H 1.09003 * 109.47232 * 59.99704 * 17 16 14 37 37 H 1.09003 * 109.54751 * 296.75493 * 20 18 17 38 38 H 1.09005 * 109.54219 * 57.02161 * 20 18 17 39 39 H 1.08997 * 109.52487 * 62.93095 * 21 20 18 40 40 H 1.09007 * 109.52640 * 183.05410 * 21 20 18 41 41 H 1.08992 * 109.48663 * 177.59111 * 22 21 20 42 42 H 1.09003 * 109.47651 * 297.61530 * 22 21 20 43 43 H 1.09005 * 109.42375 * 301.10788 * 24 23 22 44 44 H 1.08999 * 109.53911 * 181.07442 * 24 23 22 45 45 H 0.96701 * 113.99925 * 180.02562 * 27 25 11 46 46 H 1.09007 * 110.36232 * 274.74242 * 28 9 7 47 47 H 1.09000 * 110.36555 * 37.06453 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 1.9317 -3.7275 -0.0138 11 6 0.7782 -4.7522 -0.0455 12 1 1.0233 -5.5887 -0.6999 13 7 0.4693 -5.2269 1.3056 14 6 1.1502 -6.2667 1.8267 15 8 2.0184 -6.8097 1.1769 16 6 0.8328 -6.7546 3.2167 17 6 1.7419 -7.9356 3.5627 18 6 1.4201 -8.4305 4.9741 19 1 0.3580 -8.6651 5.0446 20 6 2.2428 -9.6868 5.2760 21 6 1.9710 -10.1276 6.7176 22 6 2.3031 -8.9736 7.6672 23 8 1.5265 -7.8278 7.3120 24 6 1.7720 -7.3415 5.9909 25 6 -0.4022 -3.9290 -0.6255 26 1 -0.3536 -3.8898 -1.7138 27 8 -1.6570 -4.4562 -0.1903 28 6 -0.1416 -2.5331 -0.0011 29 1 -0.4850 0.8401 0.0004 30 1 2.5575 -3.8464 -0.8983 31 1 2.5286 -3.8689 0.8871 32 1 -0.2253 -4.7927 1.8252 33 1 0.9968 -5.9480 3.9312 34 1 -0.2087 -7.0731 3.2610 35 1 1.5775 -8.7422 2.8481 36 1 2.7835 -7.6175 3.5183 37 1 1.9556 -10.4843 4.5906 38 1 3.3034 -9.4657 5.1562 39 1 0.9201 -10.3962 6.8244 40 1 2.5935 -10.9894 6.9586 41 1 2.0711 -9.2669 8.6909 42 1 3.3633 -8.7326 7.5894 43 1 2.8250 -7.0780 5.8914 44 1 1.1577 -6.4601 5.8068 45 1 -2.4244 -3.9743 -0.5279 46 1 -0.5227 -2.4944 1.0194 47 1 -0.6022 -1.7542 -0.6087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220650163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:28 Heat of formation + Delta-G solvation = -146.367774 kcal Electronic energy + Delta-G solvation = -26584.069430 eV Core-core repulsion = 22765.835427 eV Total energy + Delta-G solvation = -3818.234004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.15275 -40.33980 -39.29277 -36.64494 -36.06938 -35.28873 -33.75038 -33.41463 -30.98708 -29.95319 -28.75992 -26.56895 -25.99528 -25.66247 -22.93601 -22.28454 -21.49493 -21.12557 -20.99339 -19.05230 -18.40823 -17.97244 -17.33769 -17.18399 -16.90919 -16.67104 -16.35865 -15.81194 -15.64642 -15.39057 -15.10192 -14.81198 -14.58600 -14.45558 -14.35121 -13.90936 -13.78742 -13.53628 -13.23120 -13.18950 -12.87722 -12.75939 -12.73371 -12.68992 -12.23712 -12.05520 -12.01556 -11.97145 -11.72071 -11.64023 -11.45319 -11.15123 -10.86205 -10.79510 -10.75295 -10.36034 -10.02380 -8.95063 -7.81898 -5.26850 1.46825 1.47272 1.57601 1.69680 2.23077 2.46213 2.97337 3.10888 3.29190 3.67335 3.72025 3.72293 3.81450 3.82667 3.98783 4.01164 4.05223 4.27884 4.31525 4.31957 4.35110 4.50828 4.55576 4.59783 4.64269 4.67272 4.77154 4.84511 4.86331 4.92298 4.94595 4.97805 5.10043 5.16311 5.25286 5.28467 5.40488 5.45010 5.46562 5.56940 5.71647 6.23569 6.28321 6.63080 6.87057 7.06573 7.30651 7.70636 8.32965 9.19320 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.002775 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.512258 B =10088.707709 C =10923.187873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.060 4.060 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.618 5.618 10 C 0.127 3.873 11 C 0.151 3.849 12 H 0.094 0.906 13 N -0.699 5.699 14 C 0.507 3.493 15 O -0.588 6.588 16 C -0.135 4.135 17 C -0.087 4.087 18 C -0.113 4.113 19 H 0.085 0.915 20 C -0.120 4.120 21 C -0.151 4.151 22 C 0.051 3.949 23 O -0.404 6.404 24 C 0.058 3.942 25 C 0.087 3.913 26 H 0.081 0.919 27 O -0.560 6.560 28 C 0.135 3.865 29 H 0.249 0.751 30 H 0.034 0.966 31 H 0.017 0.983 32 H 0.410 0.590 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.099 0.901 45 H 0.397 0.603 46 H 0.001 0.999 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -18.306 10.470 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.045 3.955 12 H 0.112 0.888 13 N -0.349 5.349 14 C 0.296 3.704 15 O -0.468 6.468 16 C -0.174 4.174 17 C -0.125 4.125 18 C -0.132 4.132 19 H 0.104 0.896 20 C -0.158 4.158 21 C -0.189 4.189 22 C -0.025 4.025 23 O -0.323 6.323 24 C -0.018 4.018 25 C 0.026 3.974 26 H 0.099 0.901 27 O -0.367 6.367 28 C 0.010 3.990 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.246 0.754 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.117 0.883 45 H 0.247 0.753 46 H 0.019 0.981 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.502 -18.823 10.433 21.527 hybrid contribution 0.096 1.697 -0.419 1.751 sum -0.406 -17.126 10.014 19.843 Atomic orbital electron populations 1.69963 1.05913 1.25152 1.58275 1.25560 0.96724 1.00680 1.02324 0.84992 0.77948 0.79365 0.76879 1.19614 1.21495 1.21825 1.19431 0.90917 0.83578 1.43049 0.90569 1.44579 1.02581 1.00437 1.86970 1.21800 0.94872 0.85033 0.98200 1.21746 0.93681 0.95255 0.84824 0.88829 1.45742 1.39450 1.33382 1.16321 1.21387 0.80425 0.78805 0.89796 1.90650 1.33856 1.58726 1.63612 1.21772 1.03583 1.00430 0.91633 1.21212 0.98943 0.96657 0.95710 1.21740 1.01524 0.96098 0.93853 0.89647 1.21659 0.99944 0.97121 0.97029 1.22167 1.02992 0.98871 0.94846 1.22772 0.94966 0.85286 0.99512 1.87907 1.65755 1.46842 1.31772 1.22807 1.00800 0.96611 0.81611 1.23323 0.83509 0.92914 0.97621 0.90134 1.86305 1.15325 1.58480 1.76594 1.22409 0.84301 0.94697 0.97604 0.94068 0.94761 0.96472 0.75388 0.87578 0.86463 0.91511 0.92515 0.90800 0.91943 0.91125 0.89331 0.87764 0.92992 0.93317 0.88262 0.75256 0.98107 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.52 10.08 21.65 0.22 -53.30 16 2 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 3 Si 0.98 44.76 29.55 68.60 2.03 46.79 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.24 -13.36 10.27 84.04 0.86 -12.50 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.62 -31.23 3.39 -691.55 -2.35 -33.58 16 10 C 0.13 5.54 6.98 86.73 0.61 6.15 16 11 C 0.15 5.51 3.13 46.18 0.14 5.65 16 12 H 0.09 3.37 7.69 -2.39 -0.02 3.35 16 13 N -0.70 -22.46 4.78 -436.93 -2.09 -24.55 16 14 C 0.51 15.61 7.83 87.66 0.69 16.30 16 15 O -0.59 -22.24 15.71 -3.03 -0.05 -22.29 16 16 C -0.13 -2.82 5.46 29.84 0.16 -2.66 16 17 C -0.09 -1.76 3.98 30.59 0.12 -1.64 16 18 C -0.11 -1.87 2.39 -10.71 -0.03 -1.90 16 19 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 20 C -0.12 -1.76 5.31 30.71 0.16 -1.60 16 21 C -0.15 -1.90 6.14 30.68 0.19 -1.71 16 22 C 0.05 0.74 6.85 72.01 0.49 1.24 16 23 O -0.40 -8.19 10.76 -148.98 -1.60 -9.79 16 24 C 0.06 1.06 5.83 72.01 0.42 1.48 16 25 C 0.09 3.08 4.23 32.06 0.14 3.21 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 O -0.56 -16.30 12.64 -148.98 -1.88 -18.18 16 28 C 0.14 6.19 5.63 86.93 0.49 6.68 16 29 H 0.25 13.71 8.31 -92.70 -0.77 12.93 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.02 0.79 8.04 -2.39 -0.02 0.77 16 32 H 0.41 12.35 8.21 -92.70 -0.76 11.59 16 33 H 0.11 1.98 6.63 -2.39 -0.02 1.97 16 34 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.45 8.10 -2.38 -0.02 1.43 16 36 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.10 1.70 6.70 -2.39 -0.02 1.69 16 45 H 0.40 8.52 9.12 -74.06 -0.68 7.85 16 46 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 47 H 0.08 4.31 5.85 -2.39 -0.01 4.30 16 Total: -1.00 -68.73 370.02 -1.28 -70.01 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.46 Total: 29.04 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 4.91 Total: 15.86 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -4.22 Total: -111.43 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -3.53 Total: -50.26 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.73 -1.28 -70.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220650163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.363 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds