Wall clock time and date at job start Fri Apr 10 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99785 * 2 1 4 4 C 1.52995 * 109.47222 * 270.00627 * 3 2 1 5 5 H 1.09002 * 112.95496 * 285.32470 * 4 3 2 6 6 C 1.53938 * 113.75934 * 153.68580 * 4 3 2 7 7 C 1.53934 * 86.33851 * 221.95783 * 6 4 3 8 8 N 1.47959 * 113.76300 * 56.97666 * 4 3 2 9 9 C 1.46898 * 110.99764 * 251.90339 * 8 4 3 10 10 C 1.50698 * 109.47131 * 170.00064 * 9 8 4 11 11 O 1.21300 * 119.99850 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00748 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00602 * 179.97438 * 12 10 9 14 14 H 1.07991 * 119.99744 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99920 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99744 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00190 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46995 * 89.99924 * 17 15 13 19 19 H 1.48501 * 109.47178 * 209.99968 * 17 15 13 20 20 H 1.48502 * 109.47341 * 330.00307 * 17 15 13 21 21 C 1.34774 * 120.00699 * 180.02562 * 2 1 3 22 22 O 1.21277 * 120.00513 * 179.97438 * 21 2 1 23 23 C 1.50700 * 119.99464 * 359.97438 * 21 2 1 24 24 C 1.50702 * 109.46869 * 179.97438 * 23 21 2 25 25 N 1.34777 * 119.99928 * 179.72354 * 24 23 21 26 26 O 1.21283 * 120.00262 * 0.02562 * 24 23 21 27 27 H 1.09005 * 109.47122 * 269.99564 * 1 2 3 28 28 H 1.08988 * 109.47719 * 29.99669 * 1 2 3 29 29 H 1.09008 * 109.46700 * 150.00137 * 1 2 3 30 30 H 1.09011 * 109.46970 * 30.00507 * 3 2 1 31 31 H 1.08998 * 109.46938 * 149.99778 * 3 2 1 32 32 H 1.08997 * 113.73311 * 336.31932 * 6 4 3 33 33 H 1.08998 * 113.73191 * 107.49643 * 6 4 3 34 34 H 1.09000 * 113.76278 * 138.03797 * 7 6 4 35 35 H 1.09000 * 113.75907 * 269.29340 * 7 6 4 36 36 H 1.09002 * 109.47050 * 289.99591 * 9 8 4 37 37 H 1.09001 * 109.47583 * 49.99912 * 9 8 4 38 38 H 0.97010 * 119.99193 * 359.97438 * 12 10 9 39 39 H 0.97005 * 119.99678 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47210 * 60.00192 * 23 21 2 41 41 H 1.08994 * 109.47551 * 299.99844 * 23 21 2 42 42 H 0.96999 * 120.00047 * 180.27521 * 25 24 23 43 43 H 0.97000 * 120.00317 * 0.28382 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4523 1.7106 -1.4424 5 1 3.2364 1.1328 -1.9318 6 6 2.6101 3.2331 -1.6061 7 6 1.7444 3.0874 -2.8706 8 7 1.2204 1.8478 -2.2504 9 6 1.1159 0.7660 -3.2387 10 6 -0.2522 0.7929 -3.8700 11 8 -1.0608 1.6305 -3.5298 12 7 -0.5774 -0.1138 -4.8127 13 6 -1.8222 -0.0896 -5.3867 14 1 -2.5424 0.6556 -5.0831 15 6 -2.1575 -1.0247 -6.3582 16 7 -3.3509 -1.0019 -6.9079 17 14 -0.9120 -2.3143 -6.8827 18 1 -1.0568 -3.5193 -6.0269 19 1 -1.1492 -2.6834 -8.3015 20 1 0.4601 -1.7655 -6.7368 21 6 2.1390 -1.1671 -0.0005 22 8 3.3518 -1.1671 -0.0010 23 6 1.3855 -2.4722 -0.0005 24 6 2.3649 -3.6176 -0.0018 25 7 1.9158 -4.8883 0.0036 26 8 3.5573 -3.3959 -0.0021 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8901 -0.5139 30 1 1.6083 2.0285 0.5140 31 1 3.1498 1.1385 0.5139 32 1 2.1351 3.8111 -0.8134 33 1 3.6337 3.5489 -1.8072 34 1 0.9971 3.8728 -2.9842 35 1 2.3205 2.9141 -3.7796 36 1 1.8744 0.9034 -4.0094 37 1 1.2694 -0.1935 -2.7448 38 1 0.0694 -0.7834 -5.0851 39 1 -3.5851 -1.6550 -7.5859 40 1 0.7585 -2.5298 -0.8903 41 1 0.7592 -2.5303 0.8896 42 1 2.5461 -5.6255 0.0068 43 1 0.9621 -5.0657 0.0042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231398293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:44 Heat of formation + Delta-G solvation = -54.455633 kcal Electronic energy + Delta-G solvation = -27089.254587 eV Core-core repulsion = 23171.465849 eV Total energy + Delta-G solvation = -3917.788738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61647 -39.83514 -38.51177 -37.85154 -35.29946 -33.96439 -33.76049 -31.74332 -31.32073 -30.46102 -28.49729 -26.31717 -25.86611 -23.62735 -23.50563 -21.30000 -19.69219 -19.39136 -19.03757 -18.35609 -17.53811 -17.41675 -16.37345 -16.10973 -16.04097 -15.69229 -15.51270 -15.29814 -14.82998 -14.47174 -14.02159 -13.69060 -13.51157 -13.28597 -13.21694 -12.94458 -12.68861 -12.54821 -12.27992 -12.18090 -12.13193 -11.62747 -11.55656 -11.36716 -11.14199 -10.84208 -10.63335 -10.61943 -10.19572 -10.00168 -9.80882 -9.58422 -9.45608 -8.97066 -8.47370 -8.24261 -8.19649 -6.33644 -3.84814 2.49687 2.69844 2.79975 3.00010 3.03376 3.12264 3.48832 3.72989 3.92005 4.07444 4.32419 4.53024 4.72610 4.77498 4.82961 4.98097 5.02130 5.15552 5.18306 5.31388 5.34841 5.41615 5.44034 5.57096 5.60866 5.68917 5.76619 5.79713 5.90419 5.98148 6.06762 6.24298 6.47296 6.58638 6.61655 7.11893 7.14341 7.40619 7.56287 8.11211 8.12202 8.28344 8.58512 8.93415 9.40707 9.82806 10.79570 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.005161 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.617859 B = 5423.883939 C = 7419.198495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.141 3.859 4 C 0.007 3.993 5 H 0.079 0.921 6 C -0.136 4.136 7 C 0.009 3.991 8 N -0.439 5.439 9 C 0.011 3.989 10 C 0.457 3.543 11 O -0.556 6.556 12 N -0.595 5.595 13 C -0.303 4.303 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.882 5.882 17 Si 0.876 3.124 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.271 1.271 21 C 0.511 3.489 22 O -0.503 6.503 23 C -0.170 4.170 24 C 0.516 3.484 25 N -0.861 5.861 26 O -0.500 6.500 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.369 0.631 39 H 0.273 0.727 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.402 0.598 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.740 -2.461 14.390 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.018 3.982 4 C -0.103 4.103 5 H 0.097 0.903 6 C -0.175 4.175 7 C -0.119 4.119 8 N -0.162 5.162 9 C -0.122 4.122 10 C 0.243 3.757 11 O -0.437 6.437 12 N -0.235 5.235 13 C -0.431 4.431 14 H 0.137 0.863 15 C -0.161 4.161 16 N -0.522 5.522 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.296 3.704 22 O -0.376 6.376 23 C -0.212 4.212 24 C 0.299 3.701 25 N -0.426 5.426 26 O -0.372 6.372 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.201 0.799 39 H 0.083 0.917 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.232 0.768 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 9.786 -1.640 14.779 17.801 hybrid contribution 1.067 -1.831 -1.290 2.481 sum 10.854 -3.471 13.489 17.658 Atomic orbital electron populations 1.21966 0.78521 1.05250 1.01213 1.47730 1.07439 1.05326 1.73635 1.21351 0.97462 0.84533 0.94825 1.23963 0.93277 0.96672 0.96424 0.90280 1.23352 1.00174 0.95017 0.98936 1.23889 0.97341 0.95028 0.95692 1.68341 1.30737 1.01916 1.15201 1.22473 0.97182 0.96943 0.95585 1.19598 0.88794 0.84360 0.82992 1.90558 1.51148 1.38382 1.63590 1.42259 1.14848 1.29689 1.36752 1.19406 0.89449 1.16163 1.18103 0.86288 1.25012 0.96371 0.97894 0.96808 1.69621 1.19071 1.36214 1.27343 0.86723 0.81155 0.82358 0.79450 1.19677 1.20153 1.19619 1.19952 0.88044 0.84766 0.77616 1.90832 1.13004 1.86493 1.47300 1.21665 0.99708 0.93030 1.06838 1.20043 0.89544 0.84039 0.76498 1.43868 1.11900 1.07574 1.79296 1.90896 1.16172 1.83949 1.46197 0.93083 0.88345 0.91497 0.89841 0.89685 0.89005 0.91072 0.88919 0.91638 0.92704 0.90089 0.79908 0.91652 0.85832 0.86076 0.76757 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 10.00 59.85 0.60 1.40 16 2 N -0.61 -7.30 2.80 -181.57 -0.51 -7.80 16 3 C 0.14 1.64 5.57 -4.04 -0.02 1.61 16 4 C 0.01 0.09 3.55 -66.66 -0.24 -0.14 16 5 H 0.08 1.09 7.92 -51.93 -0.41 0.67 16 6 C -0.14 -1.45 7.84 -25.79 -0.20 -1.65 16 7 C 0.01 0.13 7.96 -2.64 -0.02 0.10 16 8 N -0.44 -6.63 4.31 -231.14 -1.00 -7.63 16 9 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 10 C 0.46 10.09 7.83 -10.99 -0.09 10.00 16 11 O -0.56 -14.34 16.01 5.54 0.09 -14.26 16 12 N -0.60 -13.90 5.09 -10.97 -0.06 -13.95 16 13 C -0.30 -8.35 10.16 -14.94 -0.15 -8.50 16 14 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 16 N -0.88 -25.33 13.96 55.50 0.77 -24.55 16 17 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 21 C 0.51 6.95 7.67 -10.99 -0.08 6.86 16 22 O -0.50 -8.97 13.76 -18.96 -0.26 -9.23 16 23 C -0.17 -1.68 4.74 -29.03 -0.14 -1.82 16 24 C 0.52 6.16 8.09 -10.98 -0.09 6.07 16 25 N -0.86 -6.34 8.87 31.22 0.28 -6.07 16 26 O -0.50 -8.71 15.02 -18.96 -0.28 -8.99 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 1.33 7.23 -51.94 -0.38 0.96 16 29 H 0.07 0.68 6.44 -51.92 -0.33 0.35 16 30 H 0.08 0.85 7.81 -51.92 -0.41 0.44 16 31 H 0.08 1.01 7.42 -51.93 -0.39 0.63 16 32 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 0.86 7.48 -51.93 -0.39 0.48 16 36 H 0.05 0.87 7.38 -51.93 -0.38 0.49 16 37 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 38 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.12 1.05 7.40 -51.93 -0.38 0.67 16 41 H 0.12 0.80 8.11 -51.93 -0.42 0.38 16 42 H 0.40 2.66 8.93 -40.82 -0.36 2.30 16 43 H 0.40 1.68 8.83 -40.82 -0.36 1.32 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -37.77 359.32 -6.92 -44.69 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -6.10 Total: 12.80 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -0.55 Total: 15.12 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.51 Total: -60.01 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.46 Total: -32.48 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.77 -6.92 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231398293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.763 kcal (2) G-P(sol) polarization free energy of solvation -37.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds