Wall clock time and date at job start Fri Apr 10 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99785 * 2 1 4 4 C 1.52995 * 109.47222 * 270.00627 * 3 2 1 5 5 H 1.09002 * 112.95496 * 285.32470 * 4 3 2 6 6 C 1.53938 * 113.75934 * 153.68580 * 4 3 2 7 7 C 1.53934 * 86.33851 * 221.95783 * 6 4 3 8 8 N 1.47959 * 113.76300 * 56.97666 * 4 3 2 9 9 C 1.46898 * 110.99764 * 251.90339 * 8 4 3 10 10 C 1.50698 * 109.47131 * 170.00064 * 9 8 4 11 11 O 1.21300 * 119.99850 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00748 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00602 * 179.97438 * 12 10 9 14 14 H 1.07991 * 119.99744 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99920 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99744 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00190 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46995 * 89.99924 * 17 15 13 19 19 H 1.48501 * 109.47178 * 209.99968 * 17 15 13 20 20 H 1.48502 * 109.47341 * 330.00307 * 17 15 13 21 21 C 1.34774 * 120.00699 * 180.02562 * 2 1 3 22 22 O 1.21277 * 120.00513 * 179.97438 * 21 2 1 23 23 C 1.50700 * 119.99464 * 359.97438 * 21 2 1 24 24 C 1.50702 * 109.46869 * 179.97438 * 23 21 2 25 25 N 1.34777 * 119.99928 * 179.72354 * 24 23 21 26 26 O 1.21283 * 120.00262 * 0.02562 * 24 23 21 27 27 H 1.09005 * 109.47122 * 269.99564 * 1 2 3 28 28 H 1.08988 * 109.47719 * 29.99669 * 1 2 3 29 29 H 1.09008 * 109.46700 * 150.00137 * 1 2 3 30 30 H 1.09011 * 109.46970 * 30.00507 * 3 2 1 31 31 H 1.08998 * 109.46938 * 149.99778 * 3 2 1 32 32 H 1.08997 * 113.73311 * 336.31932 * 6 4 3 33 33 H 1.08998 * 113.73191 * 107.49643 * 6 4 3 34 34 H 1.09000 * 113.76278 * 138.03797 * 7 6 4 35 35 H 1.09000 * 113.75907 * 269.29340 * 7 6 4 36 36 H 1.09002 * 109.47050 * 289.99591 * 9 8 4 37 37 H 1.09001 * 109.47583 * 49.99912 * 9 8 4 38 38 H 0.97010 * 119.99193 * 359.97438 * 12 10 9 39 39 H 0.97005 * 119.99678 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47210 * 60.00192 * 23 21 2 41 41 H 1.08994 * 109.47551 * 299.99844 * 23 21 2 42 42 H 0.96999 * 120.00047 * 180.27521 * 25 24 23 43 43 H 0.97000 * 120.00317 * 0.28382 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4523 1.7106 -1.4424 5 1 3.2364 1.1328 -1.9318 6 6 2.6101 3.2331 -1.6061 7 6 1.7444 3.0874 -2.8706 8 7 1.2204 1.8478 -2.2504 9 6 1.1159 0.7660 -3.2387 10 6 -0.2522 0.7929 -3.8700 11 8 -1.0608 1.6305 -3.5298 12 7 -0.5774 -0.1138 -4.8127 13 6 -1.8222 -0.0896 -5.3867 14 1 -2.5424 0.6556 -5.0831 15 6 -2.1575 -1.0247 -6.3582 16 7 -3.3509 -1.0019 -6.9079 17 14 -0.9120 -2.3143 -6.8827 18 1 -1.0568 -3.5193 -6.0269 19 1 -1.1492 -2.6834 -8.3015 20 1 0.4601 -1.7655 -6.7368 21 6 2.1390 -1.1671 -0.0005 22 8 3.3518 -1.1671 -0.0010 23 6 1.3855 -2.4722 -0.0005 24 6 2.3649 -3.6176 -0.0018 25 7 1.9158 -4.8883 0.0036 26 8 3.5573 -3.3959 -0.0021 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8901 -0.5139 30 1 1.6083 2.0285 0.5140 31 1 3.1498 1.1385 0.5139 32 1 2.1351 3.8111 -0.8134 33 1 3.6337 3.5489 -1.8072 34 1 0.9971 3.8728 -2.9842 35 1 2.3205 2.9141 -3.7796 36 1 1.8744 0.9034 -4.0094 37 1 1.2694 -0.1935 -2.7448 38 1 0.0694 -0.7834 -5.0851 39 1 -3.5851 -1.6550 -7.5859 40 1 0.7585 -2.5298 -0.8903 41 1 0.7592 -2.5303 0.8896 42 1 2.5461 -5.6255 0.0068 43 1 0.9621 -5.0657 0.0042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231398293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:43 Heat of formation + Delta-G solvation = -86.423170 kcal Electronic energy + Delta-G solvation = -27090.640803 eV Core-core repulsion = 23171.465849 eV Total energy + Delta-G solvation = -3919.174954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65330 -40.93051 -39.79649 -39.29553 -36.31879 -35.94433 -34.59584 -33.74396 -32.41211 -31.56090 -29.43980 -27.54590 -27.24118 -25.11177 -24.60967 -22.15683 -21.26189 -20.66793 -20.27004 -19.97330 -18.44489 -18.18313 -17.65967 -17.35596 -17.17958 -16.78539 -16.63814 -16.50953 -16.42745 -15.74478 -15.23847 -15.06392 -14.85642 -14.50210 -14.34442 -14.27844 -14.05415 -13.89141 -13.72522 -13.23458 -13.01352 -12.98605 -12.68491 -12.51534 -12.42056 -12.31765 -12.01926 -11.87610 -11.71423 -11.49463 -11.15428 -10.58013 -10.49377 -10.47058 -10.22668 -9.82655 -9.37048 -8.40111 -5.99790 1.29615 1.32137 1.41539 1.62365 1.74662 1.92512 1.96083 2.21367 2.59769 2.76156 3.14064 3.24636 3.45620 3.61173 3.80303 4.06639 4.08037 4.20042 4.22645 4.26948 4.32446 4.35235 4.38410 4.45063 4.53108 4.66818 4.75590 4.84007 4.90785 4.99215 5.16122 5.27171 5.39016 5.54087 5.61785 5.93769 5.95978 6.04707 6.42829 6.53825 6.60706 6.90159 7.24319 7.41096 7.45981 7.97739 8.77322 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.005161 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.617859 B = 5423.883939 C = 7419.198495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.604 5.604 3 C 0.140 3.860 4 C 0.013 3.987 5 H 0.070 0.930 6 C -0.114 4.114 7 C -0.001 4.001 8 N -0.456 5.456 9 C 0.025 3.975 10 C 0.462 3.538 11 O -0.597 6.597 12 N -0.596 5.596 13 C -0.321 4.321 14 H 0.060 0.940 15 C -0.010 4.010 16 N -0.932 5.932 17 Si 0.955 3.045 18 H -0.252 1.252 19 H -0.276 1.276 20 H -0.243 1.243 21 C 0.503 3.497 22 O -0.551 6.551 23 C -0.165 4.165 24 C 0.512 3.488 25 N -0.838 5.838 26 O -0.564 6.564 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.385 0.615 39 H 0.278 0.722 40 H 0.143 0.857 41 H 0.159 0.841 42 H 0.407 0.593 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.178 -3.978 15.203 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.337 5.337 3 C 0.016 3.984 4 C -0.098 4.098 5 H 0.088 0.912 6 C -0.152 4.152 7 C -0.130 4.130 8 N -0.179 5.179 9 C -0.107 4.107 10 C 0.249 3.751 11 O -0.480 6.480 12 N -0.238 5.238 13 C -0.450 4.450 14 H 0.078 0.922 15 C -0.209 4.209 16 N -0.573 5.573 17 Si 0.776 3.224 18 H -0.176 1.176 19 H -0.202 1.202 20 H -0.167 1.167 21 C 0.291 3.709 22 O -0.428 6.428 23 C -0.207 4.207 24 C 0.295 3.705 25 N -0.403 5.403 26 O -0.441 6.441 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.219 0.781 39 H 0.088 0.912 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.238 0.762 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 11.171 -3.175 15.613 19.459 hybrid contribution 0.487 -1.262 -1.488 2.011 sum 11.658 -4.437 14.125 18.845 Atomic orbital electron populations 1.21991 0.77666 1.04309 1.02720 1.47818 1.07867 1.05237 1.72747 1.21408 0.97712 0.84925 0.94320 1.23946 0.91585 0.98001 0.96220 0.91244 1.23274 1.00891 0.93699 0.97384 1.23972 0.97625 0.94040 0.97379 1.68347 1.32601 1.01789 1.15196 1.22324 0.93522 0.98531 0.96293 1.20573 0.90246 0.82644 0.81621 1.90541 1.53098 1.39802 1.64553 1.42100 1.13754 1.30744 1.37195 1.18972 0.90517 1.15828 1.19664 0.92209 1.25961 0.98737 1.00170 0.95993 1.69792 1.21761 1.37649 1.28141 0.85498 0.78984 0.78998 0.78891 1.17572 1.20163 1.16662 1.20555 0.87719 0.86029 0.76646 1.90818 1.15145 1.87208 1.49609 1.21734 0.99207 0.90273 1.09445 1.20420 0.88957 0.85493 0.75603 1.43687 1.13200 1.06379 1.77068 1.90878 1.18726 1.84985 1.49513 0.90345 0.91056 0.90616 0.88273 0.90041 0.87703 0.88868 0.90536 0.91204 0.91106 0.88691 0.78058 0.91210 0.83929 0.82328 0.76152 0.74974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.47 10.00 127.77 1.28 2.74 16 2 N -0.60 -13.31 2.80 -846.76 -2.37 -15.68 16 3 C 0.14 2.98 5.57 86.38 0.48 3.46 16 4 C 0.01 0.30 3.55 45.02 0.16 0.46 16 5 H 0.07 1.78 7.92 -2.39 -0.02 1.77 16 6 C -0.11 -2.16 7.84 31.24 0.25 -1.91 16 7 C 0.00 -0.04 7.96 86.36 0.69 0.65 16 8 N -0.46 -13.21 4.31 -885.19 -3.81 -17.02 16 9 C 0.03 0.82 5.28 85.56 0.45 1.27 16 10 C 0.46 20.32 7.83 87.66 0.69 21.01 16 11 O -0.60 -31.65 16.01 -3.09 -0.05 -31.70 16 12 N -0.60 -27.54 5.09 -306.99 -1.56 -29.11 16 13 C -0.32 -18.20 10.16 84.04 0.85 -17.34 16 14 H 0.06 4.03 7.39 -2.92 -0.02 4.01 16 15 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 16 N -0.93 -54.84 13.96 21.66 0.30 -54.54 16 17 Si 0.96 38.26 27.74 68.60 1.90 40.16 16 18 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 19 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.24 -8.55 6.52 99.48 0.65 -7.90 16 21 C 0.50 12.85 7.67 87.66 0.67 13.52 16 22 O -0.55 -19.46 13.76 20.42 0.28 -19.18 16 23 C -0.16 -2.79 4.74 29.10 0.14 -2.65 16 24 C 0.51 11.27 8.09 87.66 0.71 11.98 16 25 N -0.84 -10.13 8.87 -173.53 -1.54 -11.67 16 26 O -0.56 -19.53 15.02 20.40 0.31 -19.22 16 27 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 1.84 7.23 -2.39 -0.02 1.82 16 29 H 0.08 1.33 6.44 -2.38 -0.02 1.31 16 30 H 0.10 1.79 7.81 -2.38 -0.02 1.77 16 31 H 0.08 1.84 7.42 -2.39 -0.02 1.82 16 32 H 0.10 1.74 7.92 -2.39 -0.02 1.72 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.07 1.74 7.48 -2.39 -0.02 1.72 16 36 H 0.07 2.09 7.38 -2.39 -0.02 2.07 16 37 H 0.09 2.81 8.08 -2.39 -0.02 2.79 16 38 H 0.38 15.20 5.76 -92.70 -0.53 14.67 16 39 H 0.28 15.00 8.31 -92.70 -0.77 14.23 16 40 H 0.14 1.90 7.40 -2.38 -0.02 1.88 16 41 H 0.16 1.44 8.11 -2.39 -0.02 1.42 16 42 H 0.41 4.51 8.93 -92.71 -0.83 3.68 16 43 H 0.42 2.02 8.83 -92.71 -0.82 1.21 16 Total: -1.00 -88.25 359.32 -0.88 -89.14 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -1.17 Total: 35.69 kcal Atomic # 6 Polarization: 26.29 SS G_CDS: 6.83 Total: 33.12 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -8.99 Total: -128.02 kcal Atomic # 8 Polarization: -70.64 SS G_CDS: 0.54 Total: -70.10 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.90 Total: 40.16 kcal Total: -88.25 -0.88 -89.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231398293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.713 kcal (2) G-P(sol) polarization free energy of solvation -88.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds