Wall clock time and date at job start Fri Apr 10 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 113.99908 * 2 1 4 4 C 1.53003 * 109.47113 * 60.00361 * 3 2 1 5 5 C 1.52995 * 109.47166 * 300.00189 * 3 2 1 6 6 C 1.53001 * 109.46623 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47352 * 67.19299 * 6 3 2 8 8 C 1.34312 * 119.40988 * 290.15802 * 7 6 3 9 9 O 1.21283 * 118.99199 * 2.02091 * 8 7 6 10 10 C 1.50281 * 122.01478 * 182.02313 * 8 7 6 11 11 O 1.42820 * 110.53908 * 341.45039 * 10 8 7 12 12 C 1.43396 * 113.34714 * 51.36238 * 11 10 8 13 13 C 1.45820 * 119.40958 * 110.17116 * 7 6 3 14 14 C 1.52964 * 114.29399 * 31.70400 * 13 7 6 15 15 N 1.47581 * 87.80536 * 271.70689 * 14 13 7 16 16 C 1.46902 * 110.99992 * 221.69732 * 15 14 13 17 17 C 1.50699 * 109.47155 * 170.00234 * 16 15 14 18 18 H 1.08008 * 120.00182 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00180 * 179.72902 * 17 16 15 20 20 N 1.31518 * 119.99883 * 0.26773 * 19 17 16 21 21 Si 1.86798 * 120.00263 * 180.27726 * 19 17 16 22 22 H 1.48502 * 109.47202 * 89.99406 * 21 19 17 23 23 H 1.48496 * 109.47300 * 209.99598 * 21 19 17 24 24 H 1.48503 * 109.46881 * 329.99389 * 21 19 17 25 25 C 1.47569 * 87.95057 * 333.43788 * 15 14 13 26 26 H 1.09007 * 109.46657 * 299.99818 * 1 2 3 27 27 H 1.09001 * 109.47372 * 59.99443 * 1 2 3 28 28 H 1.08988 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46722 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.46788 * 299.99935 * 4 3 2 31 31 H 1.08999 * 109.47028 * 59.99702 * 4 3 2 32 32 H 1.09008 * 109.47233 * 306.73893 * 5 3 2 33 33 H 1.09001 * 109.47356 * 66.73509 * 5 3 2 34 34 H 1.08999 * 109.47338 * 186.73588 * 5 3 2 35 35 H 1.08997 * 109.47232 * 307.19416 * 6 3 2 36 36 H 1.08999 * 109.46815 * 187.18987 * 6 3 2 37 37 H 1.09003 * 109.26181 * 221.17727 * 10 8 7 38 38 H 1.09002 * 109.25959 * 101.72272 * 10 8 7 39 39 H 1.09000 * 109.71072 * 174.88062 * 12 11 10 40 40 H 1.09007 * 109.71070 * 54.26010 * 12 11 10 41 41 H 1.09000 * 113.49365 * 156.97443 * 14 13 7 42 42 H 1.08999 * 113.49754 * 26.44061 * 14 13 7 43 43 H 1.09004 * 109.46864 * 50.00125 * 16 15 14 44 44 H 1.08999 * 109.47416 * 290.00358 * 16 15 14 45 45 H 0.96993 * 120.00076 * 180.02562 * 20 19 17 46 46 H 1.08992 * 113.50330 * 141.29932 * 25 15 14 47 47 H 1.09000 * 113.49439 * 271.82938 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5589 2.0648 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1846 -0.0006 7 7 3.9795 0.6125 -1.2741 8 6 3.7165 -0.6763 -1.5456 9 8 3.0830 -1.3286 -0.7430 10 6 4.1831 -1.3348 -2.8133 11 8 4.5160 -0.3524 -3.7951 12 6 5.4156 0.6535 -3.3102 13 6 4.6994 1.4525 -2.2242 14 6 5.5627 2.5369 -1.5772 15 7 4.3771 3.4155 -1.6017 16 6 4.7416 4.7805 -2.0043 17 6 3.4900 5.5811 -2.2558 18 1 2.5206 5.1221 -2.1289 19 6 3.5821 6.9015 -2.6421 20 7 4.7625 7.4606 -2.7961 21 14 2.0306 7.8962 -2.9464 22 1 1.6083 8.5535 -1.6835 23 1 2.3001 8.9308 -3.9769 24 1 0.9499 6.9948 -3.4207 25 6 3.8891 2.6362 -2.7558 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0275 0.0005 29 1 2.0026 3.0603 1.2495 30 1 0.4722 2.1508 1.2493 31 1 1.8805 1.5238 2.1392 32 1 1.7738 1.4672 -2.1351 33 1 0.4872 2.2556 -1.1910 34 1 2.0937 3.0125 -1.3115 35 1 3.8490 0.5365 0.8177 36 1 3.9783 2.1723 0.1280 37 1 3.3895 -1.9745 -3.1994 38 1 5.0625 -1.9425 -2.6002 39 1 5.7002 1.3168 -4.1270 40 1 6.3049 0.1811 -2.8928 41 1 6.3745 2.8847 -2.2160 42 1 5.8956 2.2843 -0.5705 43 1 5.3385 4.7433 -2.9156 44 1 5.3206 5.2513 -1.2098 45 1 4.8274 8.3896 -3.0675 46 1 2.8125 2.4671 -2.7422 47 1 4.2457 3.0110 -3.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:53 Heat of formation + Delta-G solvation = -48.663645 kcal Electronic energy + Delta-G solvation = -29332.441756 eV Core-core repulsion = 25518.444522 eV Total energy + Delta-G solvation = -3813.997235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43130 -38.80701 -38.45432 -37.16012 -34.50313 -32.95918 -32.14409 -30.15639 -28.47415 -27.71328 -27.49271 -26.55345 -25.35827 -24.69826 -24.06604 -21.63063 -20.45568 -19.79880 -18.32266 -17.24330 -16.69456 -16.51998 -16.08347 -15.83776 -15.40513 -15.11838 -14.95824 -14.72898 -14.36185 -14.25948 -13.97961 -13.46556 -13.29317 -13.19487 -12.76697 -12.46062 -12.28274 -12.22532 -11.98855 -11.90779 -11.59317 -11.34729 -11.24795 -11.18623 -11.05827 -10.97793 -10.74513 -10.62542 -10.42036 -10.25514 -9.92364 -9.90089 -9.29280 -9.13330 -9.01479 -8.57068 -8.31746 -7.98843 -6.14366 -4.16387 2.78097 2.99833 3.24965 3.31844 3.34785 3.70637 4.17705 4.32350 4.41057 4.54259 4.70567 4.86475 5.04718 5.12662 5.22156 5.23554 5.26685 5.34423 5.41021 5.56833 5.59873 5.63025 5.67671 5.79818 5.81897 5.87847 5.90487 5.97684 6.06609 6.09608 6.12237 6.19631 6.32100 6.37889 6.41489 6.55362 6.65586 6.77908 6.88515 7.07412 7.50333 7.63614 7.72336 7.76949 7.98775 8.28381 8.38929 8.90536 9.48879 10.96663 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.005405 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.033526 B = 5179.324792 C = 6355.448000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.345 6.345 3 C 0.099 3.901 4 C -0.174 4.174 5 C -0.184 4.184 6 C 0.131 3.869 7 N -0.568 5.568 8 C 0.478 3.522 9 O -0.502 6.502 10 C 0.049 3.951 11 O -0.369 6.369 12 C 0.067 3.933 13 C 0.096 3.904 14 C -0.009 4.009 15 N -0.463 5.463 16 C 0.160 3.840 17 C -0.509 4.509 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.011 4.011 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.001 0.999 44 H 0.033 0.967 45 H 0.262 0.738 46 H 0.106 0.894 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 -14.204 1.886 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.264 6.264 3 C 0.059 3.941 4 C -0.232 4.232 5 C -0.241 4.241 6 C 0.009 3.991 7 N -0.300 5.300 8 C 0.265 3.735 9 O -0.377 6.377 10 C -0.031 4.031 11 O -0.287 6.287 12 C -0.010 4.010 13 C 0.009 3.991 14 C -0.139 4.139 15 N -0.186 5.186 16 C 0.034 3.966 17 C -0.548 4.548 18 H 0.080 0.920 19 C -0.143 4.143 20 N -0.535 5.535 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.141 4.141 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.019 0.981 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.123 0.877 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.036 -14.436 2.679 14.719 hybrid contribution -0.378 1.172 -0.712 1.423 sum -1.415 -13.263 1.966 13.483 Atomic orbital electron populations 1.22676 0.83824 1.01486 0.99304 1.88406 1.17284 1.25892 1.94779 1.21835 0.93814 0.83852 0.94596 1.22325 1.01587 1.01487 0.97755 1.22893 1.00938 1.02907 0.97364 1.21693 0.91816 1.01138 0.84426 1.47058 1.55615 1.09232 1.18102 1.20979 0.80730 0.82447 0.89377 1.90802 1.37139 1.61465 1.48256 1.22760 1.01961 0.91456 0.86926 1.88150 1.65751 1.38674 1.36093 1.22942 0.91326 0.90036 0.96727 1.22028 0.95213 0.91160 0.90717 1.24114 0.95621 0.93102 1.01071 1.68909 1.14669 1.03813 1.31232 1.20237 0.96987 0.84273 0.95064 1.21023 0.92589 0.95553 1.45632 0.92018 1.24959 0.96122 0.97794 0.95457 1.69939 1.22821 1.13239 1.47528 0.86533 0.83260 0.79870 0.77996 1.20604 1.21258 1.19843 1.24622 1.03386 0.90834 0.95229 0.94712 0.94646 0.90719 0.90675 0.92439 0.92318 0.92027 0.93702 0.87734 0.91509 0.85722 0.85841 0.90105 0.86622 0.91935 0.90533 0.90108 0.98089 0.94894 0.92827 0.87656 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.21 101.05 1.03 1.36 16 2 O -0.35 -5.74 6.91 -59.69 -0.41 -6.15 16 3 C 0.10 1.54 0.86 -90.62 -0.08 1.46 16 4 C -0.17 -2.43 8.25 37.16 0.31 -2.12 16 5 C -0.18 -3.01 5.85 37.15 0.22 -2.79 16 6 C 0.13 2.02 4.12 -4.04 -0.02 2.00 16 7 N -0.57 -8.44 2.00 -160.34 -0.32 -8.76 16 8 C 0.48 7.27 7.32 -11.40 -0.08 7.18 16 9 O -0.50 -9.04 13.80 -18.90 -0.26 -9.30 16 10 C 0.05 0.58 6.93 35.80 0.25 0.83 16 11 O -0.37 -4.77 10.84 -35.23 -0.38 -5.15 16 12 C 0.07 0.79 6.14 36.99 0.23 1.02 16 13 C 0.10 1.36 1.66 -132.97 -0.22 1.14 16 14 C -0.01 -0.13 6.29 -7.28 -0.05 -0.18 16 15 N -0.46 -8.55 3.64 -246.02 -0.90 -9.44 16 16 C 0.16 3.74 4.58 -4.98 -0.02 3.72 16 17 C -0.51 -13.26 8.95 -34.44 -0.31 -13.57 16 18 H 0.06 1.60 7.45 -52.48 -0.39 1.21 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -25.33 13.29 55.43 0.74 -24.60 16 21 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.01 -0.19 5.52 -7.28 -0.04 -0.23 16 26 H 0.03 0.43 6.42 -51.93 -0.33 0.10 16 27 H 0.03 0.48 6.57 -51.93 -0.34 0.14 16 28 H 0.07 0.94 8.14 -51.94 -0.42 0.52 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.05 6.12 -51.92 -0.32 0.74 16 33 H 0.04 0.69 6.92 -51.93 -0.36 0.33 16 34 H 0.10 1.92 5.19 -51.93 -0.27 1.65 16 35 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 36 H 0.13 1.97 5.12 -51.93 -0.27 1.71 16 37 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.12 1.25 7.84 -51.93 -0.41 0.84 16 40 H 0.06 0.62 8.13 -51.92 -0.42 0.20 16 41 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 42 H 0.08 1.14 7.41 -51.93 -0.38 0.75 16 43 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.11 1.88 3.58 -51.93 -0.19 1.70 16 47 H 0.07 1.31 7.45 -51.93 -0.39 0.92 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -30.13 348.69 -7.47 -37.60 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.29 Total: 3.37 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 1.12 Total: 1.33 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.48 Total: -42.80 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.06 Total: -20.60 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.13 -7.47 -37.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.064 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds