Wall clock time and date at job start Fri Apr 10 2020 18:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 113.99908 * 2 1 4 4 C 1.53003 * 109.47113 * 60.00361 * 3 2 1 5 5 C 1.52995 * 109.47166 * 300.00189 * 3 2 1 6 6 C 1.53001 * 109.46623 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47352 * 67.19299 * 6 3 2 8 8 C 1.34312 * 119.40988 * 290.15802 * 7 6 3 9 9 O 1.21283 * 118.99199 * 2.02091 * 8 7 6 10 10 C 1.50281 * 122.01478 * 182.02313 * 8 7 6 11 11 O 1.42820 * 110.53908 * 341.45039 * 10 8 7 12 12 C 1.43396 * 113.34714 * 51.36238 * 11 10 8 13 13 C 1.45820 * 119.40958 * 110.17116 * 7 6 3 14 14 C 1.52964 * 114.29399 * 31.70400 * 13 7 6 15 15 N 1.47581 * 87.80536 * 271.70689 * 14 13 7 16 16 C 1.46902 * 110.99992 * 221.69732 * 15 14 13 17 17 C 1.50699 * 109.47155 * 170.00234 * 16 15 14 18 18 H 1.08008 * 120.00182 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00180 * 179.72902 * 17 16 15 20 20 N 1.31518 * 119.99883 * 0.26773 * 19 17 16 21 21 Si 1.86798 * 120.00263 * 180.27726 * 19 17 16 22 22 H 1.48502 * 109.47202 * 89.99406 * 21 19 17 23 23 H 1.48496 * 109.47300 * 209.99598 * 21 19 17 24 24 H 1.48503 * 109.46881 * 329.99389 * 21 19 17 25 25 C 1.47569 * 87.95057 * 333.43788 * 15 14 13 26 26 H 1.09007 * 109.46657 * 299.99818 * 1 2 3 27 27 H 1.09001 * 109.47372 * 59.99443 * 1 2 3 28 28 H 1.08988 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46722 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.46788 * 299.99935 * 4 3 2 31 31 H 1.08999 * 109.47028 * 59.99702 * 4 3 2 32 32 H 1.09008 * 109.47233 * 306.73893 * 5 3 2 33 33 H 1.09001 * 109.47356 * 66.73509 * 5 3 2 34 34 H 1.08999 * 109.47338 * 186.73588 * 5 3 2 35 35 H 1.08997 * 109.47232 * 307.19416 * 6 3 2 36 36 H 1.08999 * 109.46815 * 187.18987 * 6 3 2 37 37 H 1.09003 * 109.26181 * 221.17727 * 10 8 7 38 38 H 1.09002 * 109.25959 * 101.72272 * 10 8 7 39 39 H 1.09000 * 109.71072 * 174.88062 * 12 11 10 40 40 H 1.09007 * 109.71070 * 54.26010 * 12 11 10 41 41 H 1.09000 * 113.49365 * 156.97443 * 14 13 7 42 42 H 1.08999 * 113.49754 * 26.44061 * 14 13 7 43 43 H 1.09004 * 109.46864 * 50.00125 * 16 15 14 44 44 H 1.08999 * 109.47416 * 290.00358 * 16 15 14 45 45 H 0.96993 * 120.00076 * 180.02562 * 20 19 17 46 46 H 1.08992 * 113.50330 * 141.29932 * 25 15 14 47 47 H 1.09000 * 113.49439 * 271.82938 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5589 2.0648 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1846 -0.0006 7 7 3.9795 0.6125 -1.2741 8 6 3.7165 -0.6763 -1.5456 9 8 3.0830 -1.3286 -0.7430 10 6 4.1831 -1.3348 -2.8133 11 8 4.5160 -0.3524 -3.7951 12 6 5.4156 0.6535 -3.3102 13 6 4.6994 1.4525 -2.2242 14 6 5.5627 2.5369 -1.5772 15 7 4.3771 3.4155 -1.6017 16 6 4.7416 4.7805 -2.0043 17 6 3.4900 5.5811 -2.2558 18 1 2.5206 5.1221 -2.1289 19 6 3.5821 6.9015 -2.6421 20 7 4.7625 7.4606 -2.7961 21 14 2.0306 7.8962 -2.9464 22 1 1.6083 8.5535 -1.6835 23 1 2.3001 8.9308 -3.9769 24 1 0.9499 6.9948 -3.4207 25 6 3.8891 2.6362 -2.7558 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0275 0.0005 29 1 2.0026 3.0603 1.2495 30 1 0.4722 2.1508 1.2493 31 1 1.8805 1.5238 2.1392 32 1 1.7738 1.4672 -2.1351 33 1 0.4872 2.2556 -1.1910 34 1 2.0937 3.0125 -1.3115 35 1 3.8490 0.5365 0.8177 36 1 3.9783 2.1723 0.1280 37 1 3.3895 -1.9745 -3.1994 38 1 5.0625 -1.9425 -2.6002 39 1 5.7002 1.3168 -4.1270 40 1 6.3049 0.1811 -2.8928 41 1 6.3745 2.8847 -2.2160 42 1 5.8956 2.2843 -0.5705 43 1 5.3385 4.7433 -2.9156 44 1 5.3206 5.2513 -1.2098 45 1 4.8274 8.3896 -3.0675 46 1 2.8125 2.4671 -2.7422 47 1 4.2457 3.0110 -3.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:52 Heat of formation + Delta-G solvation = -68.104051 kcal Electronic energy + Delta-G solvation = -29333.284755 eV Core-core repulsion = 25518.444522 eV Total energy + Delta-G solvation = -3814.840234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.66659 -40.10764 -39.61226 -38.27070 -35.88119 -34.79684 -33.44639 -31.55030 -29.64659 -29.17087 -28.76529 -27.67820 -26.64479 -26.23312 -25.33615 -23.15583 -21.83033 -21.03582 -19.43357 -18.53349 -18.35233 -17.81603 -17.28939 -17.08090 -16.82749 -16.32274 -16.27127 -16.06526 -15.67699 -15.56483 -15.31500 -14.81660 -14.64227 -14.42789 -13.94407 -13.90564 -13.79226 -13.51711 -13.35912 -13.14422 -12.90868 -12.82139 -12.68821 -12.57820 -12.45625 -12.33764 -12.30858 -12.09804 -11.72879 -11.56517 -11.38442 -11.22786 -11.14320 -10.60311 -10.34223 -10.20024 -9.60539 -9.48496 -8.21024 -6.28630 1.39646 1.40900 1.50561 1.61959 1.86281 2.39307 2.71074 2.99959 3.13560 3.24154 3.35034 3.51726 3.71784 3.89875 4.00308 4.07788 4.18249 4.30278 4.43405 4.45575 4.49886 4.53558 4.57883 4.62561 4.65659 4.69894 4.71232 4.76131 4.82470 4.83621 4.86193 4.88989 4.95796 5.04933 5.14538 5.19898 5.23853 5.39049 5.50386 5.60358 5.81651 5.86372 6.14602 6.42054 6.48688 6.56669 6.86643 7.22064 7.40705 8.90162 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.005405 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.033526 B = 5179.324792 C = 6355.448000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.363 6.363 3 C 0.099 3.901 4 C -0.169 4.169 5 C -0.171 4.171 6 C 0.133 3.867 7 N -0.569 5.569 8 C 0.474 3.526 9 O -0.533 6.533 10 C 0.053 3.947 11 O -0.377 6.377 12 C 0.069 3.931 13 C 0.114 3.886 14 C -0.005 4.005 15 N -0.469 5.469 16 C 0.177 3.823 17 C -0.517 4.517 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.268 1.268 25 C -0.015 4.015 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.092 0.908 43 H -0.017 1.017 44 H 0.005 0.995 45 H 0.263 0.737 46 H 0.096 0.904 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 -15.538 1.654 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.282 6.282 3 C 0.059 3.941 4 C -0.226 4.226 5 C -0.228 4.228 6 C 0.010 3.990 7 N -0.300 5.300 8 C 0.262 3.738 9 O -0.409 6.409 10 C -0.026 4.026 11 O -0.295 6.295 12 C -0.009 4.009 13 C 0.026 3.974 14 C -0.135 4.135 15 N -0.192 5.192 16 C 0.050 3.950 17 C -0.555 4.555 18 H 0.076 0.924 19 C -0.190 4.190 20 N -0.570 5.570 21 Si 0.782 3.218 22 H -0.202 1.202 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.144 4.144 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.001 0.999 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.266 -15.783 2.442 16.020 hybrid contribution -0.330 1.534 -0.610 1.684 sum -1.596 -14.248 1.832 14.454 Atomic orbital electron populations 1.22805 0.82567 1.02411 0.99851 1.88387 1.18765 1.26164 1.94889 1.21832 0.93890 0.83745 0.94655 1.22270 1.02064 1.00902 0.97407 1.22720 1.00881 1.01654 0.97515 1.21614 0.91889 1.00610 0.84887 1.47139 1.55538 1.09476 1.17885 1.21626 0.79974 0.82104 0.90121 1.90788 1.38516 1.62068 1.49560 1.22864 1.03564 0.91141 0.85078 1.88157 1.66094 1.38940 1.36296 1.23056 0.91613 0.89984 0.96210 1.21908 0.93883 0.90764 0.90800 1.24157 0.94898 0.92263 1.02206 1.68848 1.16754 1.01868 1.31699 1.19878 0.95272 0.86740 0.93107 1.21344 0.93381 0.95998 1.44801 0.92373 1.25736 0.98834 0.98997 0.95461 1.70046 1.24700 1.13560 1.48720 0.85579 0.79918 0.78423 0.77902 1.20194 1.20950 1.19248 1.24609 1.03251 0.92178 0.94408 0.93446 0.94741 0.89688 0.91397 0.91607 0.91482 0.93049 0.93250 0.89832 0.91774 0.86466 0.84708 0.87094 0.85552 0.89023 0.89537 0.88958 0.99887 0.97660 0.92803 0.88649 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.21 113.37 1.16 1.69 16 2 O -0.36 -11.73 6.91 -125.60 -0.87 -12.59 16 3 C 0.10 3.02 0.86 -10.79 -0.01 3.01 16 4 C -0.17 -4.58 8.25 71.98 0.59 -3.99 16 5 C -0.17 -5.55 5.85 71.98 0.42 -5.13 16 6 C 0.13 3.99 4.12 86.38 0.36 4.35 16 7 N -0.57 -16.17 2.00 -779.86 -1.56 -17.73 16 8 C 0.47 13.54 7.32 87.60 0.64 14.18 16 9 O -0.53 -18.48 13.80 20.34 0.28 -18.20 16 10 C 0.05 1.11 6.93 71.10 0.49 1.60 16 11 O -0.38 -8.65 10.84 -148.98 -1.62 -10.27 16 12 C 0.07 1.43 6.14 71.87 0.44 1.87 16 13 C 0.11 3.06 1.66 3.81 0.01 3.07 16 14 C -0.01 -0.16 6.29 83.69 0.53 0.37 16 15 N -0.47 -17.44 3.64 -932.26 -3.39 -20.84 16 16 C 0.18 8.46 4.58 85.56 0.39 8.85 16 17 C -0.52 -27.34 8.95 25.60 0.23 -27.11 16 18 H 0.06 3.06 7.45 -2.91 -0.02 3.04 16 19 C 0.01 0.45 5.46 84.65 0.46 0.91 16 20 N -0.93 -53.37 13.29 21.45 0.28 -53.09 16 21 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 C -0.01 -0.50 5.52 83.70 0.46 -0.04 16 26 H 0.05 1.10 6.42 -2.38 -0.02 1.09 16 27 H 0.03 0.89 6.57 -2.39 -0.02 0.88 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.65 6.54 -2.38 -0.02 1.63 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.75 6.12 -2.38 -0.01 1.73 16 33 H 0.05 1.51 6.92 -2.39 -0.02 1.49 16 34 H 0.08 3.10 5.19 -2.39 -0.01 3.08 16 35 H 0.06 1.96 8.01 -2.39 -0.02 1.94 16 36 H 0.12 3.68 5.12 -2.39 -0.01 3.67 16 37 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.13 2.40 7.84 -2.39 -0.02 2.38 16 40 H 0.09 1.44 8.13 -2.38 -0.02 1.42 16 41 H 0.09 2.38 7.72 -2.39 -0.02 2.36 16 42 H 0.09 2.47 7.41 -2.39 -0.02 2.46 16 43 H -0.02 -0.84 7.57 -2.39 -0.02 -0.86 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.10 3.44 3.58 -2.39 -0.01 3.43 16 47 H 0.07 2.35 7.45 -2.39 -0.02 2.33 16 Total: -1.00 -64.94 348.69 2.30 -62.64 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.97 Total: 21.43 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.17 Total: 3.63 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -4.67 Total: -91.66 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -2.20 Total: -41.06 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -64.94 2.30 -62.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.462 kcal (2) G-P(sol) polarization free energy of solvation -64.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds