Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99873 * 2 1 4 4 H 1.48503 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47016 * 299.99491 * 3 2 1 6 6 H 1.48501 * 109.47369 * 59.99403 * 3 2 1 7 7 C 1.37879 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46738 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46903 * 180.02562 * 10 9 7 12 12 C 1.46878 * 124.37585 * 89.97512 * 11 10 9 13 13 C 1.54704 * 105.52291 * 163.19813 * 12 11 10 14 14 C 1.53614 * 101.51152 * 24.52931 * 13 12 11 15 15 C 1.53890 * 110.68030 * 96.59667 * 14 13 12 16 16 C 1.55321 * 101.53735 * 156.81037 * 15 14 13 17 17 C 1.54404 * 103.13581 * 325.40956 * 16 15 14 18 18 N 1.46727 * 111.40799 * 214.38819 * 14 13 12 19 19 C 1.46898 * 110.99863 * 94.56246 * 18 14 13 20 20 C 1.52997 * 109.47377 * 190.34425 * 19 18 14 21 21 H 1.09004 * 109.46881 * 59.99843 * 20 19 18 22 22 O 1.42904 * 109.47100 * 300.00760 * 20 19 18 23 23 C 1.52997 * 109.47504 * 180.02562 * 20 19 18 24 24 O 1.42898 * 109.47319 * 185.00258 * 23 20 19 25 25 C 1.34751 * 124.37382 * 270.00285 * 11 10 9 26 26 O 1.21286 * 125.12979 * 0.97956 * 25 11 10 27 27 H 0.97004 * 119.99938 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47073 * 60.00246 * 9 7 2 29 29 H 1.08996 * 109.47501 * 300.00027 * 9 7 2 30 30 H 1.08997 * 109.47392 * 60.00347 * 10 9 7 31 31 H 1.09003 * 109.47498 * 299.99961 * 10 9 7 32 32 H 1.09005 * 110.23700 * 44.18881 * 12 11 10 33 33 H 1.09001 * 110.23823 * 282.21387 * 12 11 10 34 34 H 1.09005 * 111.01543 * 266.47705 * 13 12 11 35 35 H 1.08994 * 111.05571 * 142.60431 * 13 12 11 36 36 H 1.08999 * 111.01279 * 38.74942 * 15 14 13 37 37 H 1.08999 * 111.01214 * 274.87183 * 15 14 13 38 38 H 1.09003 * 110.68320 * 207.00049 * 16 15 14 39 39 H 1.09005 * 110.83368 * 83.89148 * 16 15 14 40 40 H 1.08999 * 109.89462 * 262.79215 * 17 16 15 41 41 H 1.08997 * 110.03421 * 141.66014 * 17 16 15 42 42 H 1.09004 * 109.47243 * 70.34489 * 19 18 14 43 43 H 1.09002 * 109.47426 * 310.34637 * 19 18 14 44 44 H 0.96708 * 113.99258 * 299.99573 * 22 20 19 45 45 H 1.09002 * 109.47153 * 64.99951 * 23 20 19 46 46 H 1.09001 * 109.46832 * 305.00142 * 23 20 19 47 47 H 0.96701 * 113.99881 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9307 -0.0001 12 6 1.0982 -5.6483 -1.2127 13 6 0.7656 -7.0864 -0.7494 14 6 0.4265 -6.8607 0.7317 15 6 -1.0947 -6.7366 0.9282 16 6 -1.2476 -7.1268 2.4238 17 6 -0.1538 -8.1987 2.6204 18 7 0.8520 -7.9963 1.5577 19 6 2.1837 -7.7603 2.1311 20 6 2.7021 -9.0525 2.7656 21 1 2.7667 -9.8303 2.0048 22 8 1.8058 -9.4692 3.7978 23 6 4.0888 -8.8066 3.3635 24 8 4.6221 -10.0389 3.8524 25 6 1.1320 -5.5899 1.1118 26 8 1.3292 -5.2141 2.2480 27 1 -0.4850 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 1.9117 -5.6646 -1.9380 33 1 0.2153 -5.1780 -1.6458 34 1 1.6301 -7.7416 -0.8571 35 1 -0.0930 -7.4835 -1.2909 36 1 -1.6301 -7.4352 0.2853 37 1 -1.4290 -5.7136 0.7551 38 1 -2.2358 -7.5460 2.6133 39 1 -1.0651 -6.2676 3.0693 40 1 -0.5898 -9.1939 2.5337 41 1 0.3120 -8.0819 3.5989 42 1 2.1191 -6.9825 2.8920 43 1 2.8673 -7.4425 1.3438 44 1 1.6994 -8.8240 4.5103 45 1 4.0094 -8.0939 4.1844 46 1 4.7493 -8.4041 2.5955 47 1 5.5014 -9.9580 4.2466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274564160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = -151.683916 kcal Electronic energy + Delta-G solvation = -27836.589943 eV Core-core repulsion = 24018.125414 eV Total energy + Delta-G solvation = -3818.464529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.47851 -39.63653 -38.29739 -37.56715 -36.73993 -35.57648 -33.58866 -33.42231 -30.77876 -30.47320 -28.82610 -26.99830 -26.07688 -24.55288 -23.60421 -22.96804 -22.02547 -21.60131 -19.97601 -18.71649 -18.37496 -17.77566 -17.42339 -17.29636 -16.99983 -16.80969 -16.50820 -16.13582 -15.58668 -15.13541 -15.06189 -14.84343 -14.51892 -14.47562 -14.28706 -14.20856 -13.83917 -13.68693 -13.36350 -13.26066 -13.16319 -12.91440 -12.70835 -12.60628 -12.44330 -12.17446 -12.05635 -11.91987 -11.89343 -11.71384 -11.51255 -11.41683 -11.09686 -10.95304 -10.78093 -10.63963 -9.65674 -9.28645 -8.26846 -6.39896 1.37003 1.38268 1.46463 1.51662 2.07785 2.38696 2.58279 3.06887 3.19913 3.32302 3.45071 3.51405 3.69896 3.86924 3.97653 4.06063 4.12818 4.15199 4.24984 4.26688 4.29218 4.34877 4.49941 4.53414 4.61012 4.62911 4.69114 4.77707 4.83258 4.85646 4.96108 5.02153 5.04586 5.11706 5.15542 5.29228 5.32085 5.42075 5.56084 5.78057 5.83721 5.89733 6.11641 6.24210 6.68470 6.75723 6.82222 7.15257 7.30367 8.85456 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.003502 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.053191 B = 7993.029709 C = 8705.415452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.025 3.975 10 C 0.143 3.857 11 N -0.616 5.616 12 C 0.091 3.909 13 C -0.096 4.096 14 C 0.065 3.935 15 C -0.106 4.106 16 C -0.145 4.145 17 C 0.053 3.947 18 N -0.482 5.482 19 C 0.013 3.987 20 C 0.125 3.875 21 H 0.106 0.894 22 O -0.558 6.558 23 C 0.048 3.952 24 O -0.582 6.582 25 C 0.491 3.509 26 O -0.574 6.574 27 H 0.264 0.736 28 H 0.000 1.000 29 H -0.029 1.029 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.378 0.622 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 -20.539 0.472 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.013 4.013 10 C 0.021 3.979 11 N -0.348 5.348 12 C -0.031 4.031 13 C -0.134 4.134 14 C -0.028 4.028 15 C -0.145 4.145 16 C -0.183 4.183 17 C -0.074 4.074 18 N -0.205 5.205 19 C -0.116 4.116 20 C 0.066 3.934 21 H 0.123 0.877 22 O -0.364 6.364 23 C -0.031 4.031 24 O -0.390 6.390 25 C 0.278 3.722 26 O -0.454 6.454 27 H 0.073 0.927 28 H 0.018 0.982 29 H -0.011 1.011 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.227 0.773 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.125 -21.381 0.136 21.608 hybrid contribution 0.745 3.120 1.291 3.457 sum 3.870 -18.261 1.427 18.721 Atomic orbital electron populations 1.70123 1.08000 1.27872 1.51228 1.26023 0.95774 1.03609 0.94363 0.85325 0.79166 0.78299 0.77807 1.18183 1.19865 1.20783 1.21570 0.93744 0.91766 1.51191 0.91504 1.19195 0.94534 0.93206 0.94355 1.21369 0.93816 0.81057 1.01640 1.48754 1.55327 1.22452 1.08297 1.22493 1.01645 0.92092 0.86899 1.22580 1.05152 0.94774 0.90904 1.22189 0.96494 0.86935 0.97192 1.22576 0.91621 1.02216 0.98038 1.22905 1.01101 0.98580 0.95722 1.23024 0.91503 0.99152 0.93769 1.63756 1.01916 1.34233 1.20560 1.22956 0.91785 0.97262 0.99598 1.21747 0.86481 0.95591 0.89609 0.87658 1.86643 1.66000 1.48389 1.35414 1.22809 0.95515 0.86333 0.98447 1.86469 1.38939 1.32005 1.81588 1.21774 0.78795 0.87200 0.84390 1.90613 1.59083 1.73193 1.22552 0.92689 0.98197 1.01080 0.92928 0.89074 0.88046 0.91084 0.88204 0.85896 0.86200 0.92687 0.88228 0.94165 0.88753 0.92066 0.93547 0.90783 0.77289 0.92977 0.91726 0.75325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 9 C 0.03 1.36 5.30 29.85 0.16 1.52 16 10 C 0.14 6.04 5.88 86.38 0.51 6.55 16 11 N -0.62 -21.90 2.94 -818.15 -2.41 -24.31 16 12 C 0.09 2.25 7.37 86.89 0.64 2.89 16 13 C -0.10 -1.86 6.46 31.38 0.20 -1.66 16 14 C 0.07 1.71 0.68 3.17 0.00 1.71 16 15 C -0.11 -2.59 5.97 31.69 0.19 -2.41 16 16 C -0.14 -3.53 6.84 31.87 0.22 -3.31 16 17 C 0.05 1.21 5.58 86.62 0.48 1.70 16 18 N -0.48 -11.62 4.85 -844.27 -4.09 -15.71 16 19 C 0.01 0.32 3.49 86.30 0.30 0.62 16 20 C 0.13 2.69 3.51 30.59 0.11 2.79 16 21 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 22 O -0.56 -12.45 10.90 -144.32 -1.57 -14.02 16 23 C 0.05 0.88 6.68 71.98 0.48 1.36 16 24 O -0.58 -10.95 13.62 -144.32 -1.97 -12.92 16 25 C 0.49 17.90 5.36 87.51 0.47 18.37 16 26 O -0.57 -25.65 15.32 -3.05 -0.05 -25.69 16 27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 30 H 0.05 2.37 7.95 -2.39 -0.02 2.35 16 31 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 1.71 8.12 -2.38 -0.02 1.69 16 35 H 0.12 1.68 7.63 -2.39 -0.02 1.66 16 36 H 0.12 2.11 7.78 -2.39 -0.02 2.09 16 37 H 0.05 1.62 8.00 -2.39 -0.02 1.60 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 1.44 5.13 -2.39 -0.01 1.43 16 42 H 0.05 1.43 5.82 -2.39 -0.01 1.42 16 43 H 0.07 1.89 7.71 -2.39 -0.02 1.87 16 44 H 0.38 6.85 7.92 -74.05 -0.59 6.26 16 45 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.40 3.70 9.12 -74.06 -0.68 3.02 16 Total: -1.00 -77.93 370.24 -3.61 -81.54 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.29 Total: 22.28 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 4.45 Total: -0.28 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -6.22 Total: -97.21 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -3.59 Total: -52.63 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -77.93 -3.61 -81.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274564160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.142 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds