Wall clock time and date at job start Fri Apr 10 2020 18:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99674 * 2 1 4 4 C 1.52998 * 109.46798 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47262 * 65.00082 * 4 3 2 6 6 C 1.36934 * 120.00194 * 269.99789 * 5 4 3 7 7 H 1.08005 * 120.00099 * 329.23322 * 6 5 4 8 8 C 1.38816 * 120.00502 * 149.22909 * 6 5 4 9 9 N 1.31616 * 119.99884 * 332.70848 * 8 6 5 10 10 Si 1.86798 * 119.99993 * 152.69693 * 8 6 5 11 11 H 1.48510 * 109.46632 * 85.00722 * 10 8 6 12 12 H 1.48494 * 109.47252 * 205.00128 * 10 8 6 13 13 H 1.48499 * 109.47524 * 325.00980 * 10 8 6 14 14 C 1.46502 * 119.99999 * 89.99879 * 5 4 3 15 15 C 1.53005 * 109.47244 * 85.52782 * 14 5 4 16 16 C 1.50697 * 109.47117 * 180.02562 * 15 14 5 17 17 C 1.35350 * 126.75307 * 125.24622 * 16 15 14 18 18 N 1.35309 * 106.17678 * 180.12593 * 17 16 15 19 19 C 1.46502 * 125.86895 * 179.90561 * 18 17 16 20 20 C 1.50696 * 109.46967 * 124.71389 * 19 18 17 21 21 O 1.20825 * 120.00632 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99723 * 180.02562 * 20 19 18 23 23 C 1.45208 * 116.99843 * 179.97438 * 22 20 19 24 24 N 1.28713 * 108.26381 * 359.63715 * 18 17 16 25 25 N 1.28638 * 110.17970 * 0.22859 * 24 18 17 26 26 H 1.08996 * 109.47476 * 299.99852 * 1 2 3 27 27 H 1.08998 * 109.47645 * 59.99919 * 1 2 3 28 28 H 1.09011 * 109.47229 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46933 * 60.00138 * 3 2 1 30 30 H 1.09002 * 109.46931 * 300.00140 * 3 2 1 31 31 H 1.08999 * 109.47127 * 304.99940 * 4 3 2 32 32 H 1.09004 * 109.46575 * 185.00195 * 4 3 2 33 33 H 0.96993 * 120.00251 * 179.97438 * 9 8 6 34 34 H 1.08993 * 109.47297 * 325.52538 * 14 5 4 35 35 H 1.09002 * 109.47165 * 205.52731 * 14 5 4 36 36 H 1.09001 * 109.46837 * 59.99579 * 15 14 5 37 37 H 1.08995 * 109.46714 * 299.99793 * 15 14 5 38 38 H 1.08002 * 126.91388 * 0.02562 * 17 16 15 39 39 H 1.08997 * 109.46914 * 4.71467 * 19 18 17 40 40 H 1.09003 * 109.47128 * 244.70891 * 19 18 17 41 41 H 1.08998 * 109.46787 * 59.99791 * 23 22 20 42 42 H 1.09001 * 109.47016 * 179.97438 * 23 22 20 43 43 H 1.08992 * 109.46873 * 299.99652 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0967 -0.7969 -1.3369 7 1 4.3618 -1.3707 -0.4611 8 6 3.8789 -1.4396 -2.5478 9 7 3.0741 -0.9046 -3.4413 10 14 4.7282 -3.0636 -2.9093 11 1 3.9300 -4.1776 -2.3371 12 1 4.8471 -3.2437 -4.3785 13 1 6.0822 -3.0607 -2.2996 14 6 4.2863 1.4008 -2.4148 15 6 5.7370 1.8788 -2.3259 16 6 6.0563 2.7396 -3.5209 17 6 6.5465 4.0011 -3.5026 18 7 6.6726 4.3753 -4.7968 19 6 7.1664 5.6703 -5.2717 20 6 8.3208 5.4522 -6.2155 21 8 8.6933 4.3303 -6.4655 22 8 8.9360 6.5045 -6.7777 23 6 10.0406 6.2196 -7.6762 24 7 6.2896 3.3960 -5.5391 25 7 5.9159 2.4053 -4.8086 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0278 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8514 0.5683 0.8409 32 1 3.9784 2.1766 0.0890 33 1 2.9221 -1.3535 -4.2876 34 1 3.6199 2.2631 -2.4304 35 1 4.1504 0.8200 -3.3271 36 1 6.4034 1.0164 -2.3102 37 1 5.8728 2.4596 -1.4136 38 1 6.7870 4.5910 -2.6305 39 1 7.4994 6.2659 -4.4218 40 1 6.3657 6.1957 -5.7924 41 1 9.6852 5.6099 -8.5069 42 1 10.4469 7.1552 -8.0605 43 1 10.8183 5.6800 -7.1360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307817038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:26 Heat of formation + Delta-G solvation = 9.488139 kcal Electronic energy + Delta-G solvation = -25923.104543 eV Core-core repulsion = 22008.088615 eV Total energy + Delta-G solvation = -3915.015928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.01026 -40.76937 -37.15665 -37.00216 -35.65368 -34.60368 -32.28163 -31.32074 -29.91234 -29.00662 -27.62050 -27.21753 -25.50831 -24.00468 -22.88843 -22.41807 -21.41233 -20.55810 -19.57348 -18.27912 -17.58673 -16.97134 -16.58639 -16.49450 -15.67007 -15.52244 -15.07703 -14.61781 -14.57249 -14.31328 -13.93318 -13.88109 -13.68515 -13.54659 -12.94008 -12.63690 -12.52327 -12.16065 -12.05863 -11.55275 -11.27788 -11.23943 -11.10112 -11.02461 -10.95788 -10.68071 -10.56119 -10.42807 -10.17507 -9.95905 -9.79663 -9.64314 -9.42107 -8.73370 -8.69896 -8.20090 -6.46946 -5.56184 -3.00034 1.52890 1.69916 2.03851 2.58142 3.02464 3.56317 3.64574 3.66199 4.08769 4.22592 4.50614 4.68030 4.70717 4.71827 4.78025 4.80086 5.12364 5.20128 5.40739 5.58626 5.70576 5.75453 5.85494 5.86480 5.99610 6.17937 6.24705 6.28585 6.32674 6.41023 6.52142 6.53032 6.63712 6.66010 6.80182 6.98047 7.25555 7.27536 7.96730 8.06391 8.17980 8.70701 8.88133 9.39788 10.04854 10.57806 11.47438 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.003056 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.449553 B = 9158.712130 C =10226.208321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.046 3.954 4 C 0.144 3.856 5 N -0.576 5.576 6 C -0.245 4.245 7 H 0.063 0.937 8 C 0.014 3.986 9 N -0.877 5.877 10 Si 0.887 3.113 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.152 3.848 15 C -0.057 4.057 16 C 0.016 3.984 17 C -0.068 4.068 18 N -0.304 5.304 19 C 0.134 3.866 20 C 0.445 3.555 21 O -0.469 6.469 22 O -0.358 6.358 23 C 0.037 3.963 24 N -0.072 5.072 25 N -0.244 5.244 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.019 0.981 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.252 0.748 34 H 0.016 0.984 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.188 0.812 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 19.637 -1.026 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C -0.034 4.034 4 C 0.017 3.983 5 N -0.296 5.296 6 C -0.375 4.375 7 H 0.080 0.920 8 C -0.186 4.186 9 N -0.520 5.520 10 Si 0.716 3.284 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.024 3.976 15 C -0.099 4.099 16 C -0.121 4.121 17 C -0.216 4.216 18 N -0.100 5.100 19 C 0.010 3.990 20 C 0.284 3.716 21 O -0.353 6.353 22 O -0.275 6.275 23 C -0.056 4.056 24 N -0.051 5.051 25 N -0.112 5.112 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.205 0.795 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.225 18.561 -2.733 20.485 hybrid contribution 0.443 0.014 0.592 0.739 sum 8.668 18.575 -2.141 20.609 Atomic orbital electron populations 1.22569 0.83901 1.01490 0.98164 1.88158 1.16913 1.27135 1.94775 1.23348 0.98303 0.84703 0.97031 1.21038 0.89469 0.96258 0.91558 1.43892 1.74715 1.03060 1.07901 1.18892 1.40637 0.82141 0.95781 0.91971 1.24877 0.97605 0.97059 0.99088 1.70044 1.33314 1.39975 1.08640 0.86574 0.80192 0.84473 0.77124 1.21610 1.21667 1.20687 1.20902 0.88158 0.93378 0.95116 1.20780 1.03218 0.96600 0.89321 1.22448 1.01269 0.93532 0.94837 1.23322 1.11436 0.99273 0.87548 1.46736 1.44610 1.12779 1.05834 1.21154 0.95347 0.82740 0.99743 1.23394 0.83797 0.83708 0.80711 1.90839 1.62278 1.24480 1.57713 1.86442 1.46289 1.37026 1.57694 1.23335 0.86706 1.03303 0.92266 1.78425 1.14289 0.91835 1.20519 1.75239 1.15861 1.17827 1.02285 0.95999 0.95033 0.90734 0.96322 0.94613 0.93043 0.93264 0.93841 0.96557 0.87051 0.90094 0.92052 0.79464 0.83700 0.84329 0.91486 0.87671 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.01 101.05 1.11 1.77 16 2 O -0.35 -8.10 10.18 -35.23 -0.36 -8.45 16 3 C 0.05 0.93 6.28 37.16 0.23 1.17 16 4 C 0.14 2.99 6.12 -4.05 -0.02 2.96 16 5 N -0.58 -14.29 2.45 -173.24 -0.42 -14.71 16 6 C -0.25 -6.84 8.98 -15.06 -0.14 -6.97 16 7 H 0.06 1.76 7.96 -52.48 -0.42 1.34 16 8 C 0.01 0.40 4.82 -17.43 -0.08 0.31 16 9 N -0.88 -26.44 11.44 55.49 0.63 -25.80 16 10 Si 0.89 22.87 29.63 -169.99 -5.04 17.83 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.15 3.60 5.25 -4.04 -0.02 3.58 16 15 C -0.06 -1.13 6.12 -27.88 -0.17 -1.31 16 16 C 0.02 0.30 6.50 -82.78 -0.54 -0.23 16 17 C -0.07 -0.94 11.49 -17.05 -0.20 -1.14 16 18 N -0.30 -4.23 3.20 -62.44 -0.20 -4.43 16 19 C 0.13 1.06 7.05 -5.19 -0.04 1.02 16 20 C 0.45 4.67 7.97 36.00 0.29 4.96 16 21 O -0.47 -7.24 15.43 -18.75 -0.29 -7.53 16 22 O -0.36 -2.92 10.57 -39.27 -0.41 -3.34 16 23 C 0.04 0.24 10.56 101.05 1.07 1.30 16 24 N -0.07 -1.36 12.13 60.35 0.73 -0.63 16 25 N -0.24 -5.31 12.40 33.29 0.41 -4.90 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 32 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 35 H 0.11 3.13 5.31 -51.93 -0.28 2.86 16 36 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 38 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.15 0.48 8.07 -51.93 -0.42 0.06 16 40 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.47 8.13 -51.93 -0.42 0.04 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -38.49 372.34 -4.42 -42.90 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -6.58 Total: -3.97 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 1.49 Total: 7.43 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 1.16 Total: -50.48 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.06 Total: -19.32 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.04 Total: 17.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.49 -4.42 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307817038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.391 kcal (2) G-P(sol) polarization free energy of solvation -38.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds