Wall clock time and date at job start Fri Apr 10 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99674 * 2 1 4 4 C 1.52998 * 109.46798 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47262 * 65.00082 * 4 3 2 6 6 C 1.36934 * 120.00194 * 269.99789 * 5 4 3 7 7 H 1.08005 * 120.00099 * 329.23322 * 6 5 4 8 8 C 1.38816 * 120.00502 * 149.22909 * 6 5 4 9 9 N 1.31616 * 119.99884 * 332.70848 * 8 6 5 10 10 Si 1.86798 * 119.99993 * 152.69693 * 8 6 5 11 11 H 1.48510 * 109.46632 * 85.00722 * 10 8 6 12 12 H 1.48494 * 109.47252 * 205.00128 * 10 8 6 13 13 H 1.48499 * 109.47524 * 325.00980 * 10 8 6 14 14 C 1.46502 * 119.99999 * 89.99879 * 5 4 3 15 15 C 1.53005 * 109.47244 * 85.52782 * 14 5 4 16 16 C 1.50697 * 109.47117 * 180.02562 * 15 14 5 17 17 C 1.35350 * 126.75307 * 125.24622 * 16 15 14 18 18 N 1.35309 * 106.17678 * 180.12593 * 17 16 15 19 19 C 1.46502 * 125.86895 * 179.90561 * 18 17 16 20 20 C 1.50696 * 109.46967 * 124.71389 * 19 18 17 21 21 O 1.20825 * 120.00632 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99723 * 180.02562 * 20 19 18 23 23 C 1.45208 * 116.99843 * 179.97438 * 22 20 19 24 24 N 1.28713 * 108.26381 * 359.63715 * 18 17 16 25 25 N 1.28638 * 110.17970 * 0.22859 * 24 18 17 26 26 H 1.08996 * 109.47476 * 299.99852 * 1 2 3 27 27 H 1.08998 * 109.47645 * 59.99919 * 1 2 3 28 28 H 1.09011 * 109.47229 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46933 * 60.00138 * 3 2 1 30 30 H 1.09002 * 109.46931 * 300.00140 * 3 2 1 31 31 H 1.08999 * 109.47127 * 304.99940 * 4 3 2 32 32 H 1.09004 * 109.46575 * 185.00195 * 4 3 2 33 33 H 0.96993 * 120.00251 * 179.97438 * 9 8 6 34 34 H 1.08993 * 109.47297 * 325.52538 * 14 5 4 35 35 H 1.09002 * 109.47165 * 205.52731 * 14 5 4 36 36 H 1.09001 * 109.46837 * 59.99579 * 15 14 5 37 37 H 1.08995 * 109.46714 * 299.99793 * 15 14 5 38 38 H 1.08002 * 126.91388 * 0.02562 * 17 16 15 39 39 H 1.08997 * 109.46914 * 4.71467 * 19 18 17 40 40 H 1.09003 * 109.47128 * 244.70891 * 19 18 17 41 41 H 1.08998 * 109.46787 * 59.99791 * 23 22 20 42 42 H 1.09001 * 109.47016 * 179.97438 * 23 22 20 43 43 H 1.08992 * 109.46873 * 299.99652 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0967 -0.7969 -1.3369 7 1 4.3618 -1.3707 -0.4611 8 6 3.8789 -1.4396 -2.5478 9 7 3.0741 -0.9046 -3.4413 10 14 4.7282 -3.0636 -2.9093 11 1 3.9300 -4.1776 -2.3371 12 1 4.8471 -3.2437 -4.3785 13 1 6.0822 -3.0607 -2.2996 14 6 4.2863 1.4008 -2.4148 15 6 5.7370 1.8788 -2.3259 16 6 6.0563 2.7396 -3.5209 17 6 6.5465 4.0011 -3.5026 18 7 6.6726 4.3753 -4.7968 19 6 7.1664 5.6703 -5.2717 20 6 8.3208 5.4522 -6.2155 21 8 8.6933 4.3303 -6.4655 22 8 8.9360 6.5045 -6.7777 23 6 10.0406 6.2196 -7.6762 24 7 6.2896 3.3960 -5.5391 25 7 5.9159 2.4053 -4.8086 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0278 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8514 0.5683 0.8409 32 1 3.9784 2.1766 0.0890 33 1 2.9221 -1.3535 -4.2876 34 1 3.6199 2.2631 -2.4304 35 1 4.1504 0.8200 -3.3271 36 1 6.4034 1.0164 -2.3102 37 1 5.8728 2.4596 -1.4136 38 1 6.7870 4.5910 -2.6305 39 1 7.4994 6.2659 -4.4218 40 1 6.3657 6.1957 -5.7924 41 1 9.6852 5.6099 -8.5069 42 1 10.4469 7.1552 -8.0605 43 1 10.8183 5.6800 -7.1360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307817038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:25 Heat of formation + Delta-G solvation = -19.297860 kcal Electronic energy + Delta-G solvation = -25924.352797 eV Core-core repulsion = 22008.088615 eV Total energy + Delta-G solvation = -3916.264182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.21504 -41.57192 -38.81929 -37.82527 -37.36465 -35.77689 -33.83011 -33.24027 -30.93079 -30.37402 -29.13338 -28.06781 -27.08939 -25.83620 -24.34812 -23.64527 -22.57637 -21.87568 -21.16396 -19.06989 -18.55576 -18.49976 -17.75227 -17.41500 -17.16575 -16.89481 -16.60023 -16.43452 -15.82382 -15.66493 -15.47998 -15.26697 -14.83072 -14.63456 -14.24508 -13.89204 -13.83796 -13.47699 -13.16067 -13.09632 -12.98679 -12.66459 -12.54767 -12.49776 -12.44587 -12.06851 -11.99564 -11.92660 -11.82687 -11.70981 -11.54807 -11.23499 -11.00379 -10.36411 -10.26860 -10.00758 -8.50445 -7.70149 -5.15437 0.53982 0.93545 1.15327 1.46251 1.51535 1.57615 1.65154 1.80713 2.61545 3.22263 3.36178 3.43627 3.60017 3.74126 3.77745 4.03347 4.21585 4.25384 4.27026 4.28173 4.45353 4.52967 4.56531 4.65322 4.67234 4.70914 4.71934 4.81940 4.86175 4.97487 5.00814 5.09032 5.17171 5.26536 5.34115 5.55406 5.66384 5.83355 6.03581 6.50333 6.55222 6.67456 7.31370 7.61276 8.03981 8.50069 9.28562 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.003056 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.449553 B = 9158.712130 C =10226.208321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.048 3.952 4 C 0.139 3.861 5 N -0.591 5.591 6 C -0.235 4.235 7 H 0.056 0.944 8 C -0.038 4.038 9 N -0.908 5.908 10 Si 0.935 3.065 11 H -0.285 1.285 12 H -0.303 1.303 13 H -0.274 1.274 14 C 0.158 3.842 15 C -0.038 4.038 16 C -0.028 4.028 17 C -0.022 4.022 18 N -0.292 5.292 19 C 0.125 3.875 20 C 0.448 3.552 21 O -0.530 6.530 22 O -0.347 6.347 23 C 0.030 3.970 24 N -0.110 5.110 25 N -0.308 5.308 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.241 0.759 34 H 0.016 0.984 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.101 0.899 38 H 0.251 0.749 39 H 0.206 0.794 40 H 0.172 0.828 41 H 0.055 0.945 42 H 0.141 0.859 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.191 23.354 1.191 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.031 4.031 4 C 0.013 3.987 5 N -0.311 5.311 6 C -0.365 4.365 7 H 0.074 0.926 8 C -0.234 4.234 9 N -0.553 5.553 10 Si 0.765 3.235 11 H -0.212 1.212 12 H -0.230 1.230 13 H -0.199 1.199 14 C 0.031 3.969 15 C -0.079 4.079 16 C -0.167 4.167 17 C -0.172 4.172 18 N -0.087 5.087 19 C 0.005 3.995 20 C 0.290 3.710 21 O -0.418 6.418 22 O -0.262 6.262 23 C -0.063 4.063 24 N -0.088 5.088 25 N -0.175 5.175 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.267 0.733 39 H 0.223 0.777 40 H 0.189 0.811 41 H 0.074 0.926 42 H 0.159 0.841 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.210 22.333 -0.527 24.163 hybrid contribution 0.188 -0.924 -0.058 0.945 sum 9.398 21.409 -0.585 23.389 Atomic orbital electron populations 1.22706 0.81826 1.02306 0.99443 1.88082 1.19444 1.28911 1.95089 1.23319 0.97768 0.84024 0.98008 1.21267 0.90127 0.97977 0.89336 1.44074 1.75467 1.02284 1.09316 1.19038 1.38472 0.83841 0.95172 0.92604 1.25422 0.98828 0.99655 0.99539 1.70186 1.35345 1.41194 1.08615 0.85788 0.79696 0.82027 0.76026 1.21183 1.23014 1.19934 1.20659 0.90922 0.92324 0.92960 1.20386 0.99245 0.96438 0.91831 1.22465 1.04637 0.95930 0.93625 1.24027 1.06873 0.97349 0.88903 1.47155 1.42352 1.13457 1.05780 1.21931 0.95304 0.80369 1.01939 1.23936 0.83771 0.83113 0.80181 1.90841 1.64243 1.26741 1.59940 1.86452 1.46440 1.35886 1.57466 1.23584 0.86012 1.05120 0.91549 1.78306 1.16263 0.92933 1.21316 1.75160 1.17968 1.20181 1.04232 0.92495 0.95767 0.90330 0.92157 0.96472 0.93069 0.89288 0.95007 0.96545 0.91767 0.93218 0.88043 0.73332 0.77688 0.81104 0.92647 0.84057 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.20 11.01 113.37 1.25 2.45 16 2 O -0.40 -17.97 10.18 -148.98 -1.52 -19.49 16 3 C 0.05 1.85 6.28 71.98 0.45 2.31 16 4 C 0.14 5.48 6.12 86.38 0.53 6.00 16 5 N -0.59 -29.32 2.45 -702.01 -1.72 -31.04 16 6 C -0.23 -13.32 8.98 84.03 0.75 -12.56 16 7 H 0.06 3.19 7.96 -2.91 -0.02 3.17 16 8 C -0.04 -2.25 4.82 84.86 0.41 -1.84 16 9 N -0.91 -57.50 11.44 21.65 0.25 -57.25 16 10 Si 0.93 48.82 29.63 68.60 2.03 50.85 16 11 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.30 -16.30 7.11 99.48 0.71 -15.59 16 13 H -0.27 -13.79 7.11 99.48 0.71 -13.08 16 14 C 0.16 7.63 5.25 86.38 0.45 8.08 16 15 C -0.04 -1.46 6.12 29.85 0.18 -1.28 16 16 C -0.03 -1.03 6.50 41.59 0.27 -0.76 16 17 C -0.02 -0.52 11.49 83.49 0.96 0.44 16 18 N -0.29 -7.35 3.20 -351.47 -1.12 -8.48 16 19 C 0.13 1.43 7.05 85.63 0.60 2.03 16 20 C 0.45 8.45 7.97 71.23 0.57 9.02 16 21 O -0.53 -16.32 15.43 21.97 0.34 -15.98 16 22 O -0.35 -4.74 10.57 -51.46 -0.54 -5.29 16 23 C 0.03 0.34 10.56 113.37 1.20 1.54 16 24 N -0.11 -4.20 12.13 37.02 0.45 -3.75 16 25 N -0.31 -13.90 12.40 -48.60 -0.60 -14.50 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 32 H 0.09 2.77 8.07 -2.39 -0.02 2.75 16 33 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.02 0.76 8.10 -2.39 -0.02 0.74 16 35 H 0.06 3.80 5.31 -2.39 -0.01 3.79 16 36 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.10 3.03 8.12 -2.39 -0.02 3.01 16 38 H 0.25 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.21 -0.12 8.07 -2.39 -0.02 -0.14 16 40 H 0.17 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.76 8.13 -2.39 -0.02 0.74 16 42 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.06 0.74 8.13 -2.39 -0.02 0.73 16 Total: -1.00 -93.35 372.34 6.19 -87.16 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.00 Total: 2.36 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 7.63 Total: 15.42 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -2.75 Total: -115.03 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.72 Total: -40.76 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Total: -93.35 6.19 -87.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307817038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.859 kcal (2) G-P(sol) polarization free energy of solvation -93.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds