Wall clock time and date at job start Fri Apr 10 2020 18:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99922 * 2 1 4 4 O 1.21286 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00167 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.05555 * 335.12231 * 5 3 2 7 7 C 1.54375 * 110.05015 * 213.65191 * 5 3 2 8 8 C 1.54889 * 104.19813 * 217.09038 * 7 5 3 9 9 C 1.54888 * 102.74907 * 37.96834 * 8 7 5 10 10 C 1.53878 * 110.03334 * 96.53832 * 5 3 2 11 11 H 1.09000 * 110.03439 * 238.61706 * 10 5 3 12 12 N 1.46500 * 110.03236 * 0.02562 * 10 5 3 13 13 C 1.34779 * 119.99429 * 268.92329 * 12 10 5 14 14 O 1.21584 * 120.00345 * 0.27948 * 13 12 10 15 15 N 1.34778 * 119.99580 * 180.27574 * 13 12 10 16 16 C 1.46502 * 119.99918 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.46984 * 179.97438 * 16 15 13 18 18 O 1.21287 * 120.00259 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99740 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99907 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99916 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00094 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00095 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47188 * 90.00271 * 24 22 20 26 26 H 1.48502 * 109.47378 * 210.00360 * 24 22 20 27 27 H 1.48495 * 109.47127 * 330.00486 * 24 22 20 28 28 H 1.09002 * 109.47133 * 59.99982 * 1 2 3 29 29 H 1.08993 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47431 * 300.00212 * 1 2 3 31 31 H 0.96993 * 120.00145 * 179.97438 * 2 1 3 32 32 H 1.08998 * 110.46249 * 98.41879 * 7 5 3 33 33 H 1.08999 * 110.61490 * 335.83305 * 7 5 3 34 34 H 1.08996 * 110.75534 * 279.65257 * 8 7 5 35 35 H 1.08999 * 110.75647 * 156.28179 * 8 7 5 36 36 H 1.09000 * 110.48651 * 203.38325 * 9 8 7 37 37 H 1.09004 * 110.48984 * 80.73640 * 9 8 7 38 38 H 0.96992 * 119.99801 * 89.19969 * 12 10 5 39 39 H 0.96997 * 119.99869 * 359.97438 * 15 13 12 40 40 H 1.09003 * 109.46877 * 300.00065 * 16 15 13 41 41 H 1.09004 * 109.46933 * 59.99836 * 16 15 13 42 42 H 0.96997 * 119.99804 * 0.02562 * 19 17 16 43 43 H 0.96995 * 120.00238 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0198 0.2383 0.4298 7 6 4.1753 2.3743 0.8031 8 6 5.4304 2.8316 0.0191 9 6 5.0034 2.6318 -1.4563 10 6 4.1724 1.3323 -1.4370 11 1 4.8012 0.4829 -1.7040 12 7 3.0508 1.4404 -2.3733 13 6 2.5486 0.3326 -2.9540 14 8 3.0230 -0.7569 -2.6968 15 7 1.5204 0.4327 -3.8196 16 6 0.9741 -0.7715 -4.4504 17 6 -0.1592 -0.3884 -5.3667 18 8 -0.4795 0.7758 -5.4812 19 7 -0.8170 -1.3396 -6.0589 20 6 -1.8485 -0.9912 -6.8922 21 1 -2.1336 0.0455 -6.9942 22 6 -2.5262 -1.9717 -7.6063 23 7 -2.1789 -3.2330 -7.4826 24 14 -3.9312 -1.4969 -8.7421 25 1 -3.3986 -1.2258 -10.1016 26 1 -4.9124 -2.6096 -8.8077 27 1 -4.5994 -0.2778 -8.2201 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.4468 2.0696 1.8138 33 1 3.4325 3.1714 0.8325 34 1 6.2875 2.2034 0.2617 35 1 5.6499 3.8803 0.2191 36 1 5.8793 2.5150 -2.0945 37 1 4.3934 3.4698 -1.7938 38 1 2.6724 2.3096 -2.5784 39 1 1.1417 1.3018 -4.0244 40 1 1.7561 -1.2666 -5.0263 41 1 0.6053 -1.4494 -3.6806 42 1 -0.5611 -2.2707 -5.9670 43 1 -2.6518 -3.9174 -7.9813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324999725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:37 Heat of formation + Delta-G solvation = -111.936848 kcal Electronic energy + Delta-G solvation = -26666.961421 eV Core-core repulsion = 22746.680111 eV Total energy + Delta-G solvation = -3920.281310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.78378 -39.31975 -38.20985 -37.38057 -34.52500 -34.39403 -33.70672 -33.49302 -31.37422 -29.90566 -28.50152 -26.95176 -26.27597 -24.39741 -21.84762 -21.23627 -20.76375 -19.76463 -19.53751 -18.41574 -17.95789 -17.59368 -16.45942 -15.97941 -15.64133 -15.49482 -15.24966 -14.80226 -14.71282 -14.63282 -14.16482 -13.93037 -13.73457 -13.62479 -13.48954 -12.96390 -12.43078 -12.24649 -12.18120 -12.07078 -11.77405 -11.63162 -11.60672 -11.38144 -11.12827 -11.07390 -10.93040 -10.46165 -10.32359 -10.05914 -9.79973 -9.63730 -9.19154 -9.07200 -8.62559 -8.61946 -8.10108 -6.51763 -3.93652 2.64549 2.80977 3.11473 3.21951 3.26346 3.27949 3.36972 3.75003 4.08268 4.17326 4.36504 4.45228 4.65203 4.89358 4.93359 5.11438 5.15929 5.16891 5.21434 5.23597 5.30336 5.33887 5.53457 5.59302 5.68740 5.80245 5.83441 5.87527 5.91990 5.98459 6.07538 6.07889 6.41786 6.53336 6.75514 7.10845 7.45901 7.50033 7.92312 8.22704 8.25393 8.45187 8.78272 9.04743 9.39251 9.87411 10.65198 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.002863 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.853318 B = 9779.299041 C =10116.545204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.728 5.728 3 C 0.533 3.467 4 O -0.544 6.544 5 C -0.129 4.129 6 H 0.093 0.907 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.130 4.130 10 C 0.176 3.824 11 H 0.102 0.898 12 N -0.744 5.744 13 C 0.708 3.292 14 O -0.600 6.600 15 N -0.723 5.723 16 C 0.131 3.869 17 C 0.428 3.572 18 O -0.596 6.596 19 N -0.550 5.550 20 C -0.304 4.304 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.269 1.269 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.403 0.597 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.400 0.600 39 H 0.407 0.593 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.739 5.967 15.727 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.378 5.378 3 C 0.319 3.681 4 O -0.422 6.422 5 C -0.153 4.153 6 H 0.112 0.888 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.168 4.168 10 C 0.070 3.930 11 H 0.120 0.880 12 N -0.400 5.400 13 C 0.407 3.593 14 O -0.479 6.479 15 N -0.379 5.379 16 C 0.002 3.998 17 C 0.214 3.786 18 O -0.482 6.482 19 N -0.185 5.185 20 C -0.434 4.434 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.536 5.536 24 Si 0.759 3.241 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.244 0.756 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.229 0.771 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.366 6.278 15.745 21.587 hybrid contribution -0.806 -0.255 -0.792 1.158 sum 12.560 6.023 14.954 20.437 Atomic orbital electron populations 1.21507 0.79667 1.02259 1.02100 1.45815 1.07748 1.08873 1.75367 1.20211 0.89515 0.83597 0.74812 1.90660 1.70189 1.31298 1.50013 1.22520 0.92722 1.01366 0.98649 0.88837 1.22391 0.97801 0.96950 0.97937 1.22433 0.97503 1.01702 0.94153 1.22672 0.99710 0.96791 0.97616 1.21329 0.86643 0.99682 0.85379 0.87998 1.45300 1.37224 1.08993 1.48472 1.15845 0.80107 0.84334 0.78972 1.90866 1.63579 1.25788 1.67678 1.44777 1.35243 1.11503 1.46419 1.20750 0.96009 0.86753 0.96252 1.19776 0.86457 0.86723 0.85661 1.90503 1.69667 1.18745 1.69320 1.41783 1.29876 1.08718 1.38086 1.19726 1.08679 0.95558 1.19402 0.87717 1.25314 0.99255 0.94737 0.98396 1.69612 1.41848 0.99940 1.42172 0.85820 0.80087 0.78250 0.79926 1.20274 1.20799 1.19315 0.92096 0.90788 0.92557 0.76311 0.91299 0.89565 0.91016 0.90805 0.90444 0.90493 0.76523 0.75611 0.90117 0.90267 0.77074 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.70 59.85 0.64 1.70 16 2 N -0.73 -8.67 5.42 -67.08 -0.36 -9.03 16 3 C 0.53 6.83 5.03 -10.99 -0.06 6.77 16 4 O -0.54 -8.64 15.78 5.55 0.09 -8.55 16 5 C -0.13 -1.27 3.30 -90.60 -0.30 -1.57 16 6 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 7 C -0.11 -0.94 6.32 -25.01 -0.16 -1.09 16 8 C -0.12 -0.79 6.91 -24.74 -0.17 -0.96 16 9 C -0.13 -1.01 6.53 -25.07 -0.16 -1.17 16 10 C 0.18 1.79 3.28 -66.81 -0.22 1.57 16 11 H 0.10 1.11 7.47 -51.93 -0.39 0.72 16 12 N -0.74 -9.30 3.74 -57.58 -0.22 -9.51 16 13 C 0.71 11.07 7.69 -86.91 -0.67 10.40 16 14 O -0.60 -10.51 15.95 5.29 0.08 -10.43 16 15 N -0.72 -12.22 5.53 -66.41 -0.37 -12.59 16 16 C 0.13 2.41 6.15 -5.20 -0.03 2.37 16 17 C 0.43 9.82 7.85 -10.99 -0.09 9.73 16 18 O -0.60 -15.38 15.24 5.55 0.08 -15.29 16 19 N -0.55 -13.57 5.29 -10.96 -0.06 -13.63 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.11 2.98 7.16 -52.48 -0.38 2.60 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 23 N -0.90 -23.83 13.05 55.50 0.72 -23.10 16 24 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.40 4.30 8.82 -40.82 -0.36 3.94 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.89 6.95 -51.93 -0.36 0.53 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.62 7.76 -51.93 -0.40 0.22 16 38 H 0.40 4.81 8.41 -40.82 -0.34 4.46 16 39 H 0.41 7.06 7.45 -40.82 -0.30 6.76 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.40 9.38 7.90 -40.82 -0.32 9.05 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -32.53 361.42 -7.27 -39.80 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -6.22 Total: 21.42 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: -1.45 Total: 19.93 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -0.28 Total: -67.87 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: 0.26 Total: -34.27 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.53 -7.27 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324999725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.136 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds