Wall clock time and date at job start Fri Apr 10 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99922 * 2 1 4 4 O 1.21286 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00167 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.05555 * 335.12231 * 5 3 2 7 7 C 1.54375 * 110.05015 * 213.65191 * 5 3 2 8 8 C 1.54889 * 104.19813 * 217.09038 * 7 5 3 9 9 C 1.54888 * 102.74907 * 37.96834 * 8 7 5 10 10 C 1.53878 * 110.03334 * 96.53832 * 5 3 2 11 11 H 1.09000 * 110.03439 * 238.61706 * 10 5 3 12 12 N 1.46500 * 110.03236 * 0.02562 * 10 5 3 13 13 C 1.34779 * 119.99429 * 268.92329 * 12 10 5 14 14 O 1.21584 * 120.00345 * 0.27948 * 13 12 10 15 15 N 1.34778 * 119.99580 * 180.27574 * 13 12 10 16 16 C 1.46502 * 119.99918 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.46984 * 179.97438 * 16 15 13 18 18 O 1.21287 * 120.00259 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99740 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99907 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99916 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00094 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00095 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47188 * 90.00271 * 24 22 20 26 26 H 1.48502 * 109.47378 * 210.00360 * 24 22 20 27 27 H 1.48495 * 109.47127 * 330.00486 * 24 22 20 28 28 H 1.09002 * 109.47133 * 59.99982 * 1 2 3 29 29 H 1.08993 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47431 * 300.00212 * 1 2 3 31 31 H 0.96993 * 120.00145 * 179.97438 * 2 1 3 32 32 H 1.08998 * 110.46249 * 98.41879 * 7 5 3 33 33 H 1.08999 * 110.61490 * 335.83305 * 7 5 3 34 34 H 1.08996 * 110.75534 * 279.65257 * 8 7 5 35 35 H 1.08999 * 110.75647 * 156.28179 * 8 7 5 36 36 H 1.09000 * 110.48651 * 203.38325 * 9 8 7 37 37 H 1.09004 * 110.48984 * 80.73640 * 9 8 7 38 38 H 0.96992 * 119.99801 * 89.19969 * 12 10 5 39 39 H 0.96997 * 119.99869 * 359.97438 * 15 13 12 40 40 H 1.09003 * 109.46877 * 300.00065 * 16 15 13 41 41 H 1.09004 * 109.46933 * 59.99836 * 16 15 13 42 42 H 0.96997 * 119.99804 * 0.02562 * 19 17 16 43 43 H 0.96995 * 120.00238 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0198 0.2383 0.4298 7 6 4.1753 2.3743 0.8031 8 6 5.4304 2.8316 0.0191 9 6 5.0034 2.6318 -1.4563 10 6 4.1724 1.3323 -1.4370 11 1 4.8012 0.4829 -1.7040 12 7 3.0508 1.4404 -2.3733 13 6 2.5486 0.3326 -2.9540 14 8 3.0230 -0.7569 -2.6968 15 7 1.5204 0.4327 -3.8196 16 6 0.9741 -0.7715 -4.4504 17 6 -0.1592 -0.3884 -5.3667 18 8 -0.4795 0.7758 -5.4812 19 7 -0.8170 -1.3396 -6.0589 20 6 -1.8485 -0.9912 -6.8922 21 1 -2.1336 0.0455 -6.9942 22 6 -2.5262 -1.9717 -7.6063 23 7 -2.1789 -3.2330 -7.4826 24 14 -3.9312 -1.4969 -8.7421 25 1 -3.3986 -1.2258 -10.1016 26 1 -4.9124 -2.6096 -8.8077 27 1 -4.5994 -0.2778 -8.2201 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.4468 2.0696 1.8138 33 1 3.4325 3.1714 0.8325 34 1 6.2875 2.2034 0.2617 35 1 5.6499 3.8803 0.2191 36 1 5.8793 2.5150 -2.0945 37 1 4.3934 3.4698 -1.7938 38 1 2.6724 2.3096 -2.5784 39 1 1.1417 1.3018 -4.0244 40 1 1.7561 -1.2666 -5.0263 41 1 0.6053 -1.4494 -3.6806 42 1 -0.5611 -2.2707 -5.9670 43 1 -2.6518 -3.9174 -7.9813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324999725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:35 Heat of formation + Delta-G solvation = -138.169176 kcal Electronic energy + Delta-G solvation = -26668.098940 eV Core-core repulsion = 22746.680111 eV Total energy + Delta-G solvation = -3921.418829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.81035 -40.66764 -39.87510 -38.29705 -36.23234 -35.55118 -35.21840 -34.59017 -33.36614 -30.67674 -29.71986 -28.15328 -27.28169 -26.20518 -22.78827 -22.15683 -21.72009 -21.35793 -20.64503 -20.11601 -19.51838 -18.57740 -17.51375 -17.33152 -17.04283 -16.75664 -16.55281 -16.37242 -15.93861 -15.74246 -15.56294 -15.42393 -15.11587 -14.60939 -14.53851 -14.01945 -13.94472 -13.62563 -13.54991 -13.22384 -13.14300 -12.92388 -12.67697 -12.46442 -12.31378 -12.13663 -11.96775 -11.80056 -11.57827 -11.53632 -11.32669 -10.83624 -10.56274 -10.37965 -10.11051 -10.10163 -9.84703 -8.51628 -6.01588 1.35642 1.41863 1.53209 1.60814 1.68285 1.89692 2.13664 2.27864 2.34483 3.03453 3.15644 3.27572 3.51459 3.67044 3.85171 4.21136 4.22855 4.36185 4.40539 4.41576 4.45784 4.47387 4.48820 4.54533 4.55973 4.75014 4.84880 4.99907 5.08014 5.21374 5.23878 5.31452 5.38324 5.41466 5.51552 5.56732 5.90019 5.93901 6.48178 6.55376 6.97239 7.03519 7.27729 7.42361 7.53601 7.95005 8.65284 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.002863 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.853318 B = 9779.299041 C =10116.545204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.724 5.724 3 C 0.526 3.474 4 O -0.580 6.580 5 C -0.127 4.127 6 H 0.112 0.888 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.126 4.126 10 C 0.170 3.830 11 H 0.100 0.900 12 N -0.735 5.735 13 C 0.709 3.291 14 O -0.616 6.616 15 N -0.727 5.727 16 C 0.146 3.854 17 C 0.432 3.568 18 O -0.626 6.626 19 N -0.558 5.558 20 C -0.337 4.337 21 H 0.084 0.916 22 C -0.009 4.009 23 N -0.915 5.915 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.032 0.968 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.402 0.598 39 H 0.404 0.596 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.399 0.601 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.020 5.692 16.336 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.375 5.375 3 C 0.313 3.687 4 O -0.460 6.460 5 C -0.150 4.150 6 H 0.131 0.869 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.164 4.164 10 C 0.065 3.935 11 H 0.118 0.882 12 N -0.390 5.390 13 C 0.409 3.591 14 O -0.497 6.497 15 N -0.384 5.384 16 C 0.018 3.982 17 C 0.219 3.781 18 O -0.514 6.514 19 N -0.194 5.194 20 C -0.466 4.466 21 H 0.102 0.898 22 C -0.210 4.210 23 N -0.555 5.555 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.246 0.754 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.237 0.763 39 H 0.241 0.759 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.233 0.767 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.689 5.985 16.383 22.804 hybrid contribution -1.176 -0.157 -0.923 1.503 sum 13.514 5.829 15.460 21.345 Atomic orbital electron populations 1.21491 0.79910 1.03278 1.00790 1.45868 1.07777 1.09153 1.74684 1.20795 0.90822 0.83142 0.73941 1.90644 1.71196 1.32509 1.51661 1.22594 0.90421 1.03116 0.98825 0.86946 1.22374 0.97946 0.95526 0.98955 1.22434 0.97073 1.02798 0.92512 1.22685 0.99613 0.95107 0.98998 1.21607 0.85961 1.01066 0.84867 0.88208 1.45346 1.37360 1.08164 1.48086 1.15880 0.79654 0.84846 0.78719 1.90851 1.64033 1.26592 1.68262 1.44757 1.35857 1.10775 1.47012 1.20544 0.94469 0.87471 0.95722 1.20483 0.86601 0.85930 0.85071 1.90481 1.70685 1.20085 1.70168 1.41812 1.29960 1.09161 1.38433 1.19707 1.10498 0.95043 1.21388 0.89826 1.26088 1.01109 0.94556 0.99207 1.69670 1.42654 1.00555 1.42625 0.84898 0.77242 0.78036 0.78002 1.19559 1.19522 1.19619 0.94931 0.88622 0.92317 0.75443 0.89635 0.91880 0.89130 0.89691 0.89064 0.91025 0.76262 0.75934 0.88984 0.89022 0.76656 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.13 10.70 127.77 1.37 3.49 16 2 N -0.72 -16.78 5.42 -484.52 -2.63 -19.41 16 3 C 0.53 13.17 5.03 87.65 0.44 13.62 16 4 O -0.58 -18.60 15.78 -3.05 -0.05 -18.65 16 5 C -0.13 -2.27 3.30 -10.78 -0.04 -2.31 16 6 H 0.11 1.60 8.13 -2.39 -0.02 1.58 16 7 C -0.11 -1.61 6.32 31.71 0.20 -1.41 16 8 C -0.11 -1.13 6.91 31.88 0.22 -0.91 16 9 C -0.13 -1.68 6.53 31.67 0.21 -1.47 16 10 C 0.17 3.18 3.28 45.72 0.15 3.33 16 11 H 0.10 1.96 7.47 -2.39 -0.02 1.94 16 12 N -0.73 -17.80 3.74 -454.33 -1.70 -19.50 16 13 C 0.71 21.65 7.69 179.05 1.38 23.03 16 14 O -0.62 -20.81 15.95 -3.98 -0.06 -20.87 16 15 N -0.73 -24.45 5.53 -482.29 -2.67 -27.11 16 16 C 0.15 5.33 6.15 85.63 0.53 5.85 16 17 C 0.43 20.05 7.85 87.65 0.69 20.73 16 18 O -0.63 -33.00 15.24 -3.05 -0.05 -33.04 16 19 N -0.56 -27.97 5.29 -306.99 -1.62 -29.59 16 20 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 23 N -0.92 -48.34 13.05 21.66 0.28 -48.06 16 24 Si 0.99 41.85 29.55 68.60 2.03 43.88 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.41 8.24 8.82 -92.71 -0.82 7.42 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.25 6.95 -2.39 -0.02 1.24 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.05 7.76 -2.38 -0.02 1.03 16 38 H 0.40 9.57 8.41 -92.71 -0.78 8.79 16 39 H 0.40 14.19 7.45 -92.71 -0.69 13.50 16 40 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 42 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 43 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -70.01 361.42 -1.98 -71.99 By element: Atomic # 1 Polarization: 56.14 SS G_CDS: -1.94 Total: 54.20 kcal Atomic # 6 Polarization: 39.74 SS G_CDS: 6.42 Total: 46.16 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -8.33 Total: -143.67 kcal Atomic # 8 Polarization: -72.40 SS G_CDS: -0.16 Total: -72.56 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -70.01 -1.98 -71.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324999725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.178 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds