Wall clock time and date at job start Fri Apr 10 2020 18:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47276 * 2 1 4 4 C 1.52997 * 109.46977 * 172.72818 * 3 2 1 5 5 C 1.52995 * 109.47278 * 52.72670 * 3 2 1 6 6 N 1.46504 * 109.47259 * 292.72946 * 3 2 1 7 7 C 1.46502 * 119.99926 * 4.09054 * 6 3 2 8 8 C 1.50699 * 109.47486 * 97.81511 * 7 6 3 9 9 H 1.08007 * 119.99335 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00573 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00514 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99755 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47085 * 90.00001 * 12 10 8 14 14 H 1.48507 * 109.47197 * 330.00226 * 12 10 8 15 15 H 1.48504 * 109.47075 * 210.00056 * 12 10 8 16 16 C 1.34770 * 120.00101 * 184.09476 * 6 3 2 17 17 O 1.21288 * 119.99962 * 185.75743 * 16 6 3 18 18 C 1.50699 * 120.00304 * 5.75285 * 16 6 3 19 19 H 1.09003 * 110.33010 * 331.05510 * 18 16 6 20 20 C 1.54475 * 110.37172 * 93.30715 * 18 16 6 21 21 C 1.54683 * 103.97879 * 142.74058 * 20 18 16 22 22 C 1.54482 * 104.07956 * 0.13582 * 21 20 18 23 23 H 1.08999 * 110.37485 * 94.75802 * 22 21 20 24 24 C 1.50696 * 110.37244 * 217.09894 * 22 21 20 25 25 N 1.34780 * 120.00078 * 291.83449 * 24 22 21 26 26 O 1.21279 * 120.00024 * 111.83285 * 24 22 21 27 27 O 1.44425 * 110.37346 * 208.81074 * 18 16 6 28 28 H 1.08999 * 109.47412 * 200.61077 * 1 2 3 29 29 H 1.09004 * 109.47285 * 320.61455 * 1 2 3 30 30 H 1.08998 * 109.47282 * 80.60906 * 1 2 3 31 31 H 1.09004 * 109.46562 * 239.99706 * 2 1 3 32 32 H 1.09002 * 109.46833 * 120.00022 * 2 1 3 33 33 H 1.09000 * 109.46912 * 202.22906 * 4 3 2 34 34 H 1.08997 * 109.47223 * 322.22751 * 4 3 2 35 35 H 1.09006 * 109.46930 * 82.23528 * 4 3 2 36 36 H 1.09001 * 109.47174 * 305.72464 * 5 3 2 37 37 H 1.08997 * 109.47244 * 65.72177 * 5 3 2 38 38 H 1.08994 * 109.47590 * 185.72486 * 5 3 2 39 39 H 1.09003 * 109.47222 * 337.81539 * 7 6 3 40 40 H 1.08997 * 109.47141 * 217.82050 * 7 6 3 41 41 H 0.96996 * 120.00448 * 180.02562 * 11 10 8 42 42 H 1.09001 * 110.50859 * 261.45459 * 20 18 16 43 43 H 1.08993 * 110.51086 * 24.16896 * 20 18 16 44 44 H 1.09001 * 110.58345 * 241.44725 * 21 20 18 45 45 H 1.09000 * 110.42885 * 118.74634 * 21 20 18 46 46 H 0.97000 * 119.99827 * 359.97438 * 25 24 22 47 47 H 0.96997 * 119.99583 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5591 1.4462 0.1826 5 6 1.3865 2.2145 1.1478 6 7 1.6997 2.0808 -1.2740 7 6 0.8994 1.3572 -2.2651 8 6 -0.5431 1.7780 -2.1502 9 1 -0.8345 2.5114 -1.4128 10 6 -1.4908 1.2268 -2.9861 11 7 -2.7495 1.5943 -2.8862 12 14 -0.9869 -0.0423 -4.2609 13 1 -1.0782 -1.4013 -3.6694 14 1 0.4104 0.2170 -4.6921 15 1 -1.8921 0.0486 -5.4346 16 6 2.1228 3.3336 -1.5342 17 8 1.7553 3.9009 -2.5413 18 6 3.0526 4.0296 -0.5740 19 1 2.8913 3.6654 0.4406 20 6 4.5226 3.8125 -0.9960 21 6 5.2068 5.1622 -0.6750 22 6 4.0693 6.0314 -0.0945 23 1 4.0658 5.9744 0.9940 24 6 4.2194 7.4614 -0.5456 25 7 5.2504 8.2048 -0.0972 26 8 3.4125 7.9434 -1.3121 27 8 2.8568 5.4594 -0.6318 28 1 -0.3634 -0.9619 0.3617 29 1 -0.3634 0.7943 0.6521 30 1 -0.3634 0.1677 -1.0139 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8758 2.4140 0.5715 34 1 3.8426 0.6621 0.8846 35 1 4.0409 1.2654 -0.7783 36 1 0.3025 2.1262 1.0743 37 1 1.7208 1.8022 2.0998 38 1 1.6703 3.2651 1.0872 39 1 0.9806 0.2852 -2.0851 40 1 1.2661 1.5864 -3.2656 41 1 -3.4163 1.2063 -3.4741 42 1 4.9717 3.0070 -0.4150 43 1 4.5859 3.5968 -2.0625 44 1 5.6076 5.6140 -1.5824 45 1 5.9958 5.0225 0.0639 46 1 5.8955 7.8195 0.5161 47 1 5.3467 9.1254 -0.3873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411352671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:04 Heat of formation + Delta-G solvation = -70.389649 kcal Electronic energy + Delta-G solvation = -28651.022503 eV Core-core repulsion = 24836.083158 eV Total energy + Delta-G solvation = -3814.939345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.86899 -39.63585 -38.05392 -36.73659 -33.95822 -33.38059 -32.35227 -31.80121 -31.14731 -29.25853 -27.52146 -27.07056 -25.00577 -22.93308 -22.48161 -21.62913 -20.69196 -20.48824 -18.46297 -17.64297 -17.01638 -16.82078 -16.78167 -16.08629 -15.75498 -14.81074 -14.70388 -14.55787 -14.30763 -14.25139 -13.83313 -13.58155 -13.54658 -13.21349 -12.97793 -12.54301 -12.33161 -12.15917 -11.93419 -11.69267 -11.60107 -11.51256 -11.38781 -11.16747 -10.82976 -10.76895 -10.46286 -10.32450 -10.19591 -10.04925 -10.00753 -9.89518 -9.78935 -9.58244 -9.43433 -8.79355 -8.49717 -7.66288 -6.03263 -3.96406 2.46488 2.83881 3.27466 3.33652 3.37106 3.40341 3.65963 4.16566 4.31437 4.42202 4.54620 4.65517 4.79480 4.87365 4.99613 5.07931 5.13148 5.25028 5.28123 5.31712 5.38069 5.50842 5.64017 5.65571 5.70961 5.84088 5.92818 5.94456 6.07344 6.10474 6.25521 6.36383 6.47837 6.53487 6.61346 6.66064 6.74660 6.98987 7.02614 7.10972 7.42432 7.56817 7.70941 8.11305 8.30087 8.53148 9.01839 9.07186 9.54966 11.09847 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.004542 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.620237 B = 6162.843883 C = 6953.121664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 C 0.163 3.837 4 C -0.184 4.184 5 C -0.178 4.178 6 N -0.580 5.580 7 C 0.208 3.792 8 C -0.508 4.508 9 H 0.077 0.923 10 C 0.071 3.929 11 N -0.893 5.893 12 Si 0.864 3.136 13 H -0.274 1.274 14 H -0.264 1.264 15 H -0.284 1.284 16 C 0.516 3.484 17 O -0.507 6.507 18 C 0.036 3.964 19 H 0.110 0.890 20 C -0.151 4.151 21 C -0.141 4.141 22 C 0.052 3.948 23 H 0.095 0.905 24 C 0.520 3.480 25 N -0.856 5.856 26 O -0.510 6.510 27 O -0.315 6.315 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.030 0.970 41 H 0.264 0.736 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.400 0.600 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.944 1.901 12.476 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.151 4.151 3 C 0.078 3.922 4 C -0.241 4.241 5 C -0.235 4.235 6 N -0.314 5.314 7 C 0.088 3.912 8 C -0.546 4.546 9 H 0.095 0.905 10 C -0.131 4.131 11 N -0.532 5.532 12 Si 0.691 3.309 13 H -0.200 1.200 14 H -0.189 1.189 15 H -0.209 1.209 16 C 0.301 3.699 17 O -0.381 6.381 18 C -0.024 4.024 19 H 0.127 0.873 20 C -0.189 4.189 21 C -0.179 4.179 22 C -0.010 4.010 23 H 0.113 0.887 24 C 0.303 3.697 25 N -0.422 5.422 26 O -0.382 6.382 27 O -0.232 6.232 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.228 0.772 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 19.690 2.417 11.218 22.790 hybrid contribution 0.649 -0.550 -0.282 0.897 sum 20.340 1.867 10.937 23.169 Atomic orbital electron populations 1.22806 0.93489 0.99781 1.08862 1.21720 0.98602 0.93546 1.01194 1.20413 0.93140 0.94147 0.84542 1.23073 0.95938 1.02562 1.02563 1.22694 1.03821 0.99782 0.97205 1.47968 1.52204 1.14018 1.17253 1.19974 0.91561 0.92260 0.87455 1.21201 0.89576 1.24477 1.19382 0.90460 1.24832 0.94873 0.96846 0.96547 1.69884 1.01042 1.43324 1.38927 0.87025 0.79355 0.82125 0.82374 1.19962 1.18906 1.20946 1.19650 0.81556 0.81921 0.86821 1.90740 1.55796 1.63592 1.27999 1.23854 0.95061 0.82804 1.00700 0.87338 1.23322 0.93612 0.97790 1.04187 1.22950 0.97365 0.95372 1.02243 1.22863 0.87578 0.91628 0.98938 0.88701 1.20254 0.81050 0.87608 0.80772 1.43728 1.29762 1.16771 1.51978 1.90837 1.41453 1.72564 1.33368 1.89439 1.33169 1.16640 1.83947 0.94936 0.92167 0.85844 0.91608 0.92137 0.91060 0.91521 0.91616 0.89843 0.92039 0.92076 0.93972 0.95212 0.92611 0.88163 0.89727 0.90021 0.89400 0.77216 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.57 8.69 37.16 0.32 -3.25 16 2 C -0.11 -1.72 4.48 -26.73 -0.12 -1.84 16 3 C 0.16 2.49 0.76 -131.82 -0.10 2.39 16 4 C -0.18 -2.03 6.56 37.16 0.24 -1.78 16 5 C -0.18 -2.58 7.97 37.15 0.30 -2.28 16 6 N -0.58 -11.76 2.40 -160.19 -0.39 -12.14 16 7 C 0.21 4.94 3.25 -5.19 -0.02 4.92 16 8 C -0.51 -14.20 7.02 -34.44 -0.24 -14.44 16 9 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 10 C 0.07 2.05 5.18 -17.82 -0.09 1.95 16 11 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 12 Si 0.86 21.22 27.47 -169.99 -4.67 16.55 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 15 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 16 C 0.52 11.16 6.21 -10.99 -0.07 11.09 16 17 O -0.51 -13.90 16.48 -11.50 -0.19 -14.09 16 18 C 0.04 0.58 2.17 -27.11 -0.06 0.52 16 19 H 0.11 1.46 2.91 -51.93 -0.15 1.31 16 20 C -0.15 -1.78 5.46 -25.07 -0.14 -1.92 16 21 C -0.14 -1.30 6.63 -25.07 -0.17 -1.47 16 22 C 0.05 0.62 3.71 -27.11 -0.10 0.52 16 23 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 24 C 0.52 6.81 7.34 -10.99 -0.08 6.73 16 25 N -0.86 -6.03 8.87 31.22 0.28 -5.75 16 26 O -0.51 -9.89 17.39 -13.63 -0.24 -10.13 16 27 O -0.32 -5.83 10.33 -63.42 -0.66 -6.49 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.13 5.21 -51.93 -0.27 0.86 16 30 H 0.12 2.79 3.23 -51.93 -0.17 2.62 16 31 H 0.07 1.02 6.68 -51.93 -0.35 0.67 16 32 H 0.06 0.74 7.97 -51.93 -0.41 0.33 16 33 H 0.07 0.67 3.63 -51.93 -0.19 0.48 16 34 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 35 H 0.06 0.75 7.43 -51.93 -0.39 0.36 16 36 H 0.08 1.44 5.60 -51.93 -0.29 1.14 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.89 4.99 -51.93 -0.26 0.63 16 39 H 0.04 0.93 3.81 -51.93 -0.20 0.73 16 40 H 0.03 0.78 6.82 -51.93 -0.35 0.43 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.10 0.85 5.17 -51.93 -0.27 0.59 16 43 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 44 H 0.08 0.80 7.86 -51.93 -0.41 0.40 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.40 1.27 8.83 -40.82 -0.36 0.91 16 47 H 0.40 2.48 8.93 -40.82 -0.36 2.11 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -39.64 346.77 -6.70 -46.34 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.52 Total: 5.96 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.32 Total: 1.15 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.67 Total: -44.52 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.08 Total: -30.71 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -39.64 -6.70 -46.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411352671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.048 kcal (2) G-P(sol) polarization free energy of solvation -39.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds