Wall clock time and date at job start Fri Apr 10 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47276 * 2 1 4 4 C 1.52997 * 109.46977 * 172.72818 * 3 2 1 5 5 C 1.52995 * 109.47278 * 52.72670 * 3 2 1 6 6 N 1.46504 * 109.47259 * 292.72946 * 3 2 1 7 7 C 1.46502 * 119.99926 * 4.09054 * 6 3 2 8 8 C 1.50699 * 109.47486 * 97.81511 * 7 6 3 9 9 H 1.08007 * 119.99335 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00573 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00514 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99755 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47085 * 90.00001 * 12 10 8 14 14 H 1.48507 * 109.47197 * 330.00226 * 12 10 8 15 15 H 1.48504 * 109.47075 * 210.00056 * 12 10 8 16 16 C 1.34770 * 120.00101 * 184.09476 * 6 3 2 17 17 O 1.21288 * 119.99962 * 185.75743 * 16 6 3 18 18 C 1.50699 * 120.00304 * 5.75285 * 16 6 3 19 19 H 1.09003 * 110.33010 * 331.05510 * 18 16 6 20 20 C 1.54475 * 110.37172 * 93.30715 * 18 16 6 21 21 C 1.54683 * 103.97879 * 142.74058 * 20 18 16 22 22 C 1.54482 * 104.07956 * 0.13582 * 21 20 18 23 23 H 1.08999 * 110.37485 * 94.75802 * 22 21 20 24 24 C 1.50696 * 110.37244 * 217.09894 * 22 21 20 25 25 N 1.34780 * 120.00078 * 291.83449 * 24 22 21 26 26 O 1.21279 * 120.00024 * 111.83285 * 24 22 21 27 27 O 1.44425 * 110.37346 * 208.81074 * 18 16 6 28 28 H 1.08999 * 109.47412 * 200.61077 * 1 2 3 29 29 H 1.09004 * 109.47285 * 320.61455 * 1 2 3 30 30 H 1.08998 * 109.47282 * 80.60906 * 1 2 3 31 31 H 1.09004 * 109.46562 * 239.99706 * 2 1 3 32 32 H 1.09002 * 109.46833 * 120.00022 * 2 1 3 33 33 H 1.09000 * 109.46912 * 202.22906 * 4 3 2 34 34 H 1.08997 * 109.47223 * 322.22751 * 4 3 2 35 35 H 1.09006 * 109.46930 * 82.23528 * 4 3 2 36 36 H 1.09001 * 109.47174 * 305.72464 * 5 3 2 37 37 H 1.08997 * 109.47244 * 65.72177 * 5 3 2 38 38 H 1.08994 * 109.47590 * 185.72486 * 5 3 2 39 39 H 1.09003 * 109.47222 * 337.81539 * 7 6 3 40 40 H 1.08997 * 109.47141 * 217.82050 * 7 6 3 41 41 H 0.96996 * 120.00448 * 180.02562 * 11 10 8 42 42 H 1.09001 * 110.50859 * 261.45459 * 20 18 16 43 43 H 1.08993 * 110.51086 * 24.16896 * 20 18 16 44 44 H 1.09001 * 110.58345 * 241.44725 * 21 20 18 45 45 H 1.09000 * 110.42885 * 118.74634 * 21 20 18 46 46 H 0.97000 * 119.99827 * 359.97438 * 25 24 22 47 47 H 0.96997 * 119.99583 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5591 1.4462 0.1826 5 6 1.3865 2.2145 1.1478 6 7 1.6997 2.0808 -1.2740 7 6 0.8994 1.3572 -2.2651 8 6 -0.5431 1.7780 -2.1502 9 1 -0.8345 2.5114 -1.4128 10 6 -1.4908 1.2268 -2.9861 11 7 -2.7495 1.5943 -2.8862 12 14 -0.9869 -0.0423 -4.2609 13 1 -1.0782 -1.4013 -3.6694 14 1 0.4104 0.2170 -4.6921 15 1 -1.8921 0.0486 -5.4346 16 6 2.1228 3.3336 -1.5342 17 8 1.7553 3.9009 -2.5413 18 6 3.0526 4.0296 -0.5740 19 1 2.8913 3.6654 0.4406 20 6 4.5226 3.8125 -0.9960 21 6 5.2068 5.1622 -0.6750 22 6 4.0693 6.0314 -0.0945 23 1 4.0658 5.9744 0.9940 24 6 4.2194 7.4614 -0.5456 25 7 5.2504 8.2048 -0.0972 26 8 3.4125 7.9434 -1.3121 27 8 2.8568 5.4594 -0.6318 28 1 -0.3634 -0.9619 0.3617 29 1 -0.3634 0.7943 0.6521 30 1 -0.3634 0.1677 -1.0139 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8758 2.4140 0.5715 34 1 3.8426 0.6621 0.8846 35 1 4.0409 1.2654 -0.7783 36 1 0.3025 2.1262 1.0743 37 1 1.7208 1.8022 2.0998 38 1 1.6703 3.2651 1.0872 39 1 0.9806 0.2852 -2.0851 40 1 1.2661 1.5864 -3.2656 41 1 -3.4163 1.2063 -3.4741 42 1 4.9717 3.0070 -0.4150 43 1 4.5859 3.5968 -2.0625 44 1 5.6076 5.6140 -1.5824 45 1 5.9958 5.0225 0.0639 46 1 5.8955 7.8195 0.5161 47 1 5.3467 9.1254 -0.3873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411352671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:03 Heat of formation + Delta-G solvation = -104.132660 kcal Electronic energy + Delta-G solvation = -28652.485710 eV Core-core repulsion = 24836.083158 eV Total energy + Delta-G solvation = -3816.402552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.12969 -40.82873 -39.23399 -38.34938 -35.30379 -34.87972 -33.60898 -33.42192 -32.50063 -30.41663 -29.05316 -28.38175 -26.22634 -24.20273 -24.10297 -22.85564 -21.92461 -21.58496 -19.73233 -19.08320 -18.56300 -18.06901 -17.89131 -17.42383 -16.96223 -16.37987 -16.17723 -15.87798 -15.59192 -15.37409 -15.24446 -14.90103 -14.83332 -14.66789 -14.55428 -14.16384 -13.55300 -13.31422 -13.11944 -13.08546 -12.89095 -12.73581 -12.63096 -12.40833 -12.32049 -12.15291 -12.08266 -11.77515 -11.67841 -11.50766 -11.44011 -11.30290 -11.14808 -10.73182 -10.68754 -10.67829 -10.42280 -9.37948 -8.28352 -6.25170 1.28454 1.34329 1.43551 1.47353 1.58685 2.06254 2.31990 2.37352 3.03583 3.10918 3.35658 3.60142 3.72333 3.85444 3.96163 4.00356 4.02281 4.06573 4.15714 4.39178 4.49354 4.55857 4.66557 4.73061 4.78627 4.81230 4.87250 4.91078 4.96903 4.99040 5.02070 5.04317 5.12037 5.25538 5.29391 5.40312 5.48690 5.58093 5.66319 5.76355 5.88025 6.05877 6.32128 6.45305 6.67976 6.73966 7.25918 7.32683 7.45405 8.89219 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.004542 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.620237 B = 6162.843883 C = 6953.121664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C 0.148 3.852 4 C -0.178 4.178 5 C -0.176 4.176 6 N -0.581 5.581 7 C 0.217 3.783 8 C -0.497 4.497 9 H 0.020 0.980 10 C 0.009 3.991 11 N -0.948 5.948 12 Si 0.934 3.066 13 H -0.243 1.243 14 H -0.257 1.257 15 H -0.287 1.287 16 C 0.500 3.500 17 O -0.589 6.589 18 C 0.044 3.956 19 H 0.142 0.858 20 C -0.147 4.147 21 C -0.129 4.129 22 C 0.042 3.958 23 H 0.144 0.856 24 C 0.514 3.486 25 N -0.821 5.821 26 O -0.592 6.592 27 O -0.376 6.376 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.001 0.999 41 H 0.265 0.735 42 H 0.147 0.853 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.152 0.848 46 H 0.424 0.576 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.062 -0.375 15.707 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.147 4.147 3 C 0.065 3.935 4 C -0.235 4.235 5 C -0.233 4.233 6 N -0.313 5.313 7 C 0.095 3.905 8 C -0.536 4.536 9 H 0.039 0.961 10 C -0.188 4.188 11 N -0.589 5.589 12 Si 0.757 3.243 13 H -0.167 1.167 14 H -0.181 1.181 15 H -0.213 1.213 16 C 0.287 3.713 17 O -0.469 6.469 18 C -0.016 4.016 19 H 0.158 0.842 20 C -0.184 4.184 21 C -0.166 4.166 22 C -0.019 4.019 23 H 0.161 0.839 24 C 0.298 3.702 25 N -0.388 5.388 26 O -0.471 6.471 27 O -0.295 6.295 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.074 0.926 42 H 0.164 0.836 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.170 0.830 46 H 0.257 0.743 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 24.919 0.112 14.563 28.863 hybrid contribution -0.972 0.254 -1.152 1.528 sum 23.948 0.366 13.411 27.449 Atomic orbital electron populations 1.22664 0.96685 1.00153 1.05623 1.21762 0.95604 0.93884 1.03477 1.20980 0.96850 0.93794 0.81909 1.23041 0.91349 1.05322 1.03814 1.22680 1.01348 0.99993 0.99270 1.48137 1.50771 1.13958 1.18448 1.19656 0.89208 0.93994 0.87594 1.21243 0.92181 1.22495 1.17636 0.96121 1.25751 0.94607 0.99453 0.99015 1.70059 1.02540 1.45633 1.40629 0.85923 0.78968 0.80398 0.79053 1.16681 1.18106 1.21293 1.20909 0.81518 0.81964 0.86871 1.90683 1.59055 1.65549 1.31619 1.23929 0.95821 0.81699 1.00108 0.84176 1.23423 0.90904 1.00874 1.03223 1.23046 0.97405 0.92669 1.03505 1.23372 0.86394 0.90767 1.01368 0.83922 1.20720 0.81083 0.88548 0.79809 1.43441 1.28104 1.16586 1.50644 1.90809 1.44777 1.74190 1.37299 1.89397 1.36952 1.17988 1.85150 0.93337 0.93517 0.90296 0.91595 0.87350 0.88995 0.87490 0.91748 0.93835 0.87277 0.92380 0.91056 0.98124 0.92598 0.83559 0.92631 0.91200 0.82986 0.74313 0.75687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.13 8.69 71.98 0.63 -6.51 16 2 C -0.11 -2.98 4.48 30.59 0.14 -2.84 16 3 C 0.15 4.13 0.76 3.60 0.00 4.13 16 4 C -0.18 -2.88 6.56 71.98 0.47 -2.41 16 5 C -0.18 -4.72 7.97 71.98 0.57 -4.15 16 6 N -0.58 -23.96 2.40 -779.10 -1.87 -25.84 16 7 C 0.22 10.77 3.25 85.63 0.28 11.05 16 8 C -0.50 -29.85 7.02 25.60 0.18 -29.67 16 9 H 0.02 1.43 8.06 -2.91 -0.02 1.40 16 10 C 0.01 0.53 5.18 84.65 0.44 0.97 16 11 N -0.95 -61.98 13.96 21.44 0.30 -61.68 16 12 Si 0.93 45.36 27.47 68.60 1.88 47.25 16 13 H -0.24 -10.54 7.11 99.48 0.71 -9.83 16 14 H -0.26 -12.07 6.54 99.48 0.65 -11.41 16 15 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 16 C 0.50 22.56 6.21 87.66 0.54 23.10 16 17 O -0.59 -35.11 16.48 13.25 0.22 -34.89 16 18 C 0.04 1.36 2.17 30.35 0.07 1.42 16 19 H 0.14 3.30 2.91 -2.39 -0.01 3.29 16 20 C -0.15 -2.96 5.46 31.67 0.17 -2.78 16 21 C -0.13 -1.81 6.63 31.67 0.21 -1.60 16 22 C 0.04 0.89 3.71 30.35 0.11 1.00 16 23 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 24 C 0.51 13.01 7.34 87.66 0.64 13.66 16 25 N -0.82 -9.30 8.87 -173.53 -1.54 -10.84 16 26 O -0.59 -24.21 17.39 15.32 0.27 -23.95 16 27 O -0.38 -14.16 10.33 -122.03 -1.26 -15.43 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.81 5.21 -2.39 -0.01 1.80 16 30 H 0.08 3.66 3.23 -2.39 -0.01 3.65 16 31 H 0.07 1.81 6.68 -2.39 -0.02 1.79 16 32 H 0.11 1.98 7.97 -2.39 -0.02 1.96 16 33 H 0.09 1.10 3.63 -2.39 -0.01 1.09 16 34 H 0.11 0.99 7.83 -2.39 -0.02 0.97 16 35 H 0.06 1.13 7.43 -2.38 -0.02 1.11 16 36 H 0.04 1.53 5.60 -2.39 -0.01 1.51 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.58 4.99 -2.39 -0.01 1.57 16 39 H 0.07 3.13 3.81 -2.39 -0.01 3.12 16 40 H 0.00 0.04 6.82 -2.39 -0.02 0.02 16 41 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 42 H 0.15 1.53 5.17 -2.39 -0.01 1.52 16 43 H 0.05 1.47 7.86 -2.39 -0.02 1.45 16 44 H 0.07 1.18 7.86 -2.39 -0.02 1.16 16 45 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.42 0.68 8.83 -92.71 -0.82 -0.14 16 47 H 0.41 4.20 8.93 -92.71 -0.83 3.37 16 Total: -1.00 -105.02 346.77 1.79 -103.23 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.66 Total: 16.77 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 4.46 Total: 5.38 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -3.11 Total: -98.36 kcal Atomic # 8 Polarization: -73.49 SS G_CDS: -0.78 Total: -74.27 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -105.02 1.79 -103.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411352671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.904 kcal (2) G-P(sol) polarization free energy of solvation -105.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds