Wall clock time and date at job start Fri Apr 10 2020 18:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47202 * 2 1 4 4 C 1.52997 * 109.47237 * 240.00053 * 2 1 3 5 5 C 1.50702 * 109.47295 * 59.99949 * 4 2 1 6 6 O 1.21287 * 119.99704 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00150 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99778 * 174.63372 * 7 5 4 9 9 C 1.53000 * 112.94403 * 294.77279 * 8 7 5 10 10 C 1.53005 * 109.46905 * 304.22507 * 9 8 7 11 11 O 1.42898 * 109.47159 * 176.40813 * 10 9 8 12 12 C 1.53945 * 113.73927 * 163.18024 * 8 7 5 13 13 N 1.47812 * 86.03867 * 222.08134 * 12 8 7 14 14 C 1.36927 * 134.46163 * 204.64613 * 13 12 8 15 15 H 1.08004 * 120.00683 * 183.16692 * 14 13 12 16 16 C 1.38823 * 119.99971 * 3.16774 * 14 13 12 17 17 N 1.31616 * 119.99290 * 6.89381 * 16 14 13 18 18 Si 1.86798 * 119.99945 * 186.89768 * 16 14 13 19 19 H 1.48499 * 109.47059 * 94.94990 * 18 16 14 20 20 H 1.48504 * 109.46796 * 214.94933 * 18 16 14 21 21 H 1.48494 * 109.47259 * 334.94718 * 18 16 14 22 22 C 1.47581 * 91.04655 * 24.55088 * 13 12 8 23 23 C 1.52995 * 109.47201 * 120.00107 * 2 1 3 24 24 C 1.52995 * 117.50177 * 13.74451 * 23 2 1 25 25 C 1.52998 * 117.49942 * 305.08496 * 23 2 1 26 26 H 1.09002 * 109.47329 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47209 * 300.00052 * 1 2 3 28 28 H 1.09006 * 109.47113 * 59.99825 * 1 2 3 29 29 H 0.96705 * 113.99983 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47245 * 299.99845 * 4 2 1 31 31 H 1.08997 * 109.47399 * 179.97438 * 4 2 1 32 32 H 0.96996 * 120.00017 * 354.62565 * 7 5 4 33 33 H 1.08992 * 109.47059 * 64.22479 * 9 8 7 34 34 H 1.08999 * 109.46877 * 184.23153 * 9 8 7 35 35 H 1.09000 * 109.47363 * 296.41224 * 10 9 8 36 36 H 1.09001 * 109.46727 * 56.41453 * 10 9 8 37 37 H 0.96703 * 114.00509 * 179.97438 * 11 10 9 38 38 H 1.08996 * 113.77361 * 336.34874 * 12 8 7 39 39 H 1.09000 * 113.76707 * 107.74394 * 12 8 7 40 40 H 0.97003 * 119.99442 * 179.97438 * 17 16 14 41 41 H 1.09004 * 113.76824 * 221.15390 * 22 13 12 42 42 H 1.09000 * 113.87240 * 89.76944 * 22 13 12 43 43 H 1.09007 * 115.55036 * 159.41756 * 23 2 1 44 44 H 1.09006 * 117.49669 * 0.02562 * 24 23 2 45 45 H 1.09001 * 117.50476 * 145.01966 * 24 23 2 46 46 H 1.09002 * 117.50045 * 214.98238 * 25 23 2 47 47 H 1.09000 * 117.49974 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8407 0.9756 -2.3684 7 7 1.8628 -0.4716 -3.7038 8 6 1.2805 0.1465 -4.8976 9 6 -0.2341 -0.0488 -4.9919 10 6 -0.5603 -1.5425 -4.9331 11 8 -1.9781 -1.7209 -4.9368 12 6 2.0311 -0.1905 -6.1988 13 7 1.8489 1.2333 -6.5518 14 6 1.8032 1.9313 -7.7289 15 1 1.7056 3.0068 -7.7157 16 6 1.8824 1.2565 -8.9395 17 7 1.8645 -0.0593 -8.9617 18 14 2.0145 2.2161 -10.5367 19 1 3.4435 2.3460 -10.9194 20 1 1.2785 1.4978 -11.6080 21 1 1.4266 3.5672 -10.3526 22 6 1.7335 1.5998 -5.1269 23 6 2.0400 -0.7212 1.2492 24 6 1.0327 -1.5532 2.0453 25 6 1.5400 -0.2226 2.6065 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.9703 1.4236 -0.0004 30 1 1.6767 -1.7489 -1.2492 31 1 3.1299 -0.7208 -1.2495 32 1 2.4825 -1.2123 -3.7944 33 1 -0.7187 0.4619 -4.1599 34 1 -0.5959 0.3653 -5.9330 35 1 -0.1288 -2.0431 -5.7999 36 1 -0.1428 -1.9699 -4.0215 37 1 -2.2583 -2.6458 -4.9014 38 1 3.0718 -0.4752 -6.0445 39 1 1.4928 -0.8783 -6.8509 40 1 1.9195 -0.5309 -9.8077 41 1 0.9580 2.3387 -4.9247 42 1 2.6857 1.8427 -4.6554 43 1 3.0647 -1.0888 1.1944 44 1 0.0066 -1.5871 1.6789 45 1 1.3946 -2.4680 2.5146 46 1 2.2356 -0.2624 3.4447 47 1 0.8474 0.6191 2.6094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485403181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:20 Heat of formation + Delta-G solvation = -50.935794 kcal Electronic energy + Delta-G solvation = -27580.215419 eV Core-core repulsion = 23766.119656 eV Total energy + Delta-G solvation = -3814.095762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32772 -39.15505 -37.52476 -36.35832 -35.46604 -33.57845 -32.09259 -31.46058 -30.28843 -28.00505 -26.92073 -25.02294 -24.33289 -23.17246 -22.60169 -21.62834 -20.20363 -19.68878 -18.57642 -17.38589 -17.05897 -16.77354 -16.24038 -16.01828 -15.56418 -15.20051 -14.77625 -14.58037 -14.39505 -14.00567 -13.70299 -13.56288 -13.33244 -13.13598 -12.51470 -12.49049 -12.01364 -11.83301 -11.76986 -11.65454 -11.50152 -11.25538 -11.06249 -10.95761 -10.87604 -10.73742 -10.70663 -10.68491 -10.38208 -10.12276 -10.01100 -9.84383 -9.64513 -9.47399 -9.02678 -8.86962 -8.51408 -6.90202 -5.79350 -3.11623 3.00251 3.35464 3.39978 3.45175 3.46886 3.56601 4.33230 4.36764 4.47637 4.50496 4.57054 4.75150 4.79368 4.92198 5.10693 5.12804 5.23648 5.34602 5.37174 5.44319 5.49136 5.55340 5.59254 5.68200 5.76008 5.78533 5.84263 5.88523 5.95002 5.97295 6.06425 6.37826 6.43685 6.53326 6.60620 6.69686 6.79392 6.87651 7.15018 7.36661 7.50418 7.72667 7.90160 7.91567 7.97358 8.67035 9.01934 9.68605 10.55467 11.37006 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.003303 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.117590 B = 8475.895193 C = 9136.082347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.183 3.817 3 O -0.536 6.536 4 C -0.168 4.168 5 C 0.510 3.490 6 O -0.512 6.512 7 N -0.721 5.721 8 C 0.127 3.873 9 C -0.094 4.094 10 C 0.083 3.917 11 O -0.575 6.575 12 C 0.158 3.842 13 N -0.605 5.605 14 C -0.218 4.218 15 H 0.082 0.918 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.912 3.088 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.130 3.870 23 C -0.188 4.188 24 C -0.179 4.179 25 C -0.166 4.166 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.367 0.633 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.394 0.606 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.371 0.629 38 H 0.027 0.973 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.051 0.949 42 H 0.035 0.965 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -8.291 19.860 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.141 3.859 3 O -0.340 6.340 4 C -0.209 4.209 5 C 0.295 3.705 6 O -0.387 6.387 7 N -0.373 5.373 8 C 0.041 3.959 9 C -0.132 4.132 10 C 0.006 3.994 11 O -0.379 6.379 12 C 0.032 3.968 13 N -0.332 5.332 14 C -0.346 4.346 15 H 0.100 0.900 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.743 3.257 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.004 3.996 23 C -0.207 4.207 24 C -0.216 4.216 25 C -0.203 4.203 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.213 0.787 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.227 0.773 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.217 0.783 38 H 0.044 0.956 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.479 -6.726 19.541 20.672 hybrid contribution 1.456 -0.880 -0.870 1.911 sum 0.977 -7.605 18.671 20.185 Atomic orbital electron populations 1.22103 0.92416 1.01769 1.04867 1.20244 0.95097 0.81595 0.88933 1.86731 1.25598 1.24939 1.96707 1.22437 1.02548 1.01462 0.94464 1.20320 0.81057 0.84848 0.84229 1.90677 1.37131 1.24757 1.86103 1.46259 1.47888 1.37378 1.05790 1.22870 0.93081 0.95775 0.84206 1.21310 0.93388 0.94379 1.04143 1.22129 0.80392 0.97899 0.99025 1.86504 1.23119 1.30645 1.97658 1.22677 0.95755 0.89739 0.88615 1.45676 1.84101 1.03786 0.99612 1.19017 1.43289 0.90551 0.81710 0.90044 1.24756 1.02490 0.95718 0.97448 1.69797 1.56395 1.05570 1.24974 0.86084 0.77538 0.78905 0.83197 1.21714 1.21697 1.20495 1.22773 0.97499 0.93857 0.85499 1.23077 0.99329 1.04706 0.93583 1.23129 0.99718 0.95007 1.03697 1.22871 1.03736 0.97972 0.95682 0.91913 0.92473 0.88534 0.78692 0.88488 0.89169 0.77279 0.90989 0.89210 0.93277 0.94692 0.78338 0.95556 0.89432 0.93680 0.93105 0.94708 0.87882 0.87885 0.88987 0.89041 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 7.18 37.16 0.27 -1.59 16 2 C 0.18 1.95 0.80 -90.63 -0.07 1.87 16 3 O -0.54 -6.78 11.85 -53.50 -0.63 -7.41 16 4 C -0.17 -1.68 4.95 -27.88 -0.14 -1.82 16 5 C 0.51 7.32 7.05 -10.99 -0.08 7.25 16 6 O -0.51 -9.33 11.37 -12.71 -0.14 -9.47 16 7 N -0.72 -10.45 4.49 -49.07 -0.22 -10.67 16 8 C 0.13 2.39 0.67 -134.03 -0.09 2.31 16 9 C -0.09 -1.82 4.82 -26.73 -0.13 -1.95 16 10 C 0.08 1.35 6.85 37.16 0.25 1.60 16 11 O -0.57 -9.16 13.66 -35.23 -0.48 -9.64 16 12 C 0.16 3.53 6.89 -2.84 -0.02 3.51 16 13 N -0.61 -15.49 3.54 -177.49 -0.63 -16.12 16 14 C -0.22 -6.14 10.69 -15.06 -0.16 -6.30 16 15 H 0.08 2.25 7.84 -52.48 -0.41 1.83 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 17 N -0.92 -26.57 11.31 55.49 0.63 -25.95 16 18 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.13 2.87 7.51 -2.97 -0.02 2.85 16 23 C -0.19 -1.57 5.32 -90.63 -0.48 -2.05 16 24 C -0.18 -1.36 9.66 -26.70 -0.26 -1.61 16 25 C -0.17 -1.36 9.86 -26.70 -0.26 -1.62 16 26 H 0.06 0.63 6.73 -51.93 -0.35 0.29 16 27 H 0.06 0.66 6.96 -51.93 -0.36 0.30 16 28 H 0.10 1.49 5.51 -51.93 -0.29 1.20 16 29 H 0.37 3.36 9.05 45.56 0.41 3.77 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 4.60 8.71 -40.82 -0.36 4.25 16 33 H 0.07 1.46 7.13 -51.93 -0.37 1.09 16 34 H 0.09 2.05 8.02 -51.93 -0.42 1.63 16 35 H 0.05 0.81 7.59 -51.93 -0.39 0.42 16 36 H 0.03 0.49 7.56 -51.93 -0.39 0.10 16 37 H 0.37 3.88 9.12 45.56 0.42 4.30 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 2.15 6.32 -51.93 -0.33 1.82 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.80 5.89 -51.93 -0.31 0.50 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.91 7.28 -51.93 -0.38 0.53 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -34.28 371.96 -8.22 -42.51 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.04 Total: 11.85 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.29 Total: 2.15 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.22 Total: -52.74 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.26 Total: -26.52 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.28 -8.22 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485403181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.427 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds