Wall clock time and date at job start Fri Apr 10 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47202 * 2 1 4 4 C 1.52997 * 109.47237 * 240.00053 * 2 1 3 5 5 C 1.50702 * 109.47295 * 59.99949 * 4 2 1 6 6 O 1.21287 * 119.99704 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00150 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99778 * 174.63372 * 7 5 4 9 9 C 1.53000 * 112.94403 * 294.77279 * 8 7 5 10 10 C 1.53005 * 109.46905 * 304.22507 * 9 8 7 11 11 O 1.42898 * 109.47159 * 176.40813 * 10 9 8 12 12 C 1.53945 * 113.73927 * 163.18024 * 8 7 5 13 13 N 1.47812 * 86.03867 * 222.08134 * 12 8 7 14 14 C 1.36927 * 134.46163 * 204.64613 * 13 12 8 15 15 H 1.08004 * 120.00683 * 183.16692 * 14 13 12 16 16 C 1.38823 * 119.99971 * 3.16774 * 14 13 12 17 17 N 1.31616 * 119.99290 * 6.89381 * 16 14 13 18 18 Si 1.86798 * 119.99945 * 186.89768 * 16 14 13 19 19 H 1.48499 * 109.47059 * 94.94990 * 18 16 14 20 20 H 1.48504 * 109.46796 * 214.94933 * 18 16 14 21 21 H 1.48494 * 109.47259 * 334.94718 * 18 16 14 22 22 C 1.47581 * 91.04655 * 24.55088 * 13 12 8 23 23 C 1.52995 * 109.47201 * 120.00107 * 2 1 3 24 24 C 1.52995 * 117.50177 * 13.74451 * 23 2 1 25 25 C 1.52998 * 117.49942 * 305.08496 * 23 2 1 26 26 H 1.09002 * 109.47329 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47209 * 300.00052 * 1 2 3 28 28 H 1.09006 * 109.47113 * 59.99825 * 1 2 3 29 29 H 0.96705 * 113.99983 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47245 * 299.99845 * 4 2 1 31 31 H 1.08997 * 109.47399 * 179.97438 * 4 2 1 32 32 H 0.96996 * 120.00017 * 354.62565 * 7 5 4 33 33 H 1.08992 * 109.47059 * 64.22479 * 9 8 7 34 34 H 1.08999 * 109.46877 * 184.23153 * 9 8 7 35 35 H 1.09000 * 109.47363 * 296.41224 * 10 9 8 36 36 H 1.09001 * 109.46727 * 56.41453 * 10 9 8 37 37 H 0.96703 * 114.00509 * 179.97438 * 11 10 9 38 38 H 1.08996 * 113.77361 * 336.34874 * 12 8 7 39 39 H 1.09000 * 113.76707 * 107.74394 * 12 8 7 40 40 H 0.97003 * 119.99442 * 179.97438 * 17 16 14 41 41 H 1.09004 * 113.76824 * 221.15390 * 22 13 12 42 42 H 1.09000 * 113.87240 * 89.76944 * 22 13 12 43 43 H 1.09007 * 115.55036 * 159.41756 * 23 2 1 44 44 H 1.09006 * 117.49669 * 0.02562 * 24 23 2 45 45 H 1.09001 * 117.50476 * 145.01966 * 24 23 2 46 46 H 1.09002 * 117.50045 * 214.98238 * 25 23 2 47 47 H 1.09000 * 117.49974 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8407 0.9756 -2.3684 7 7 1.8628 -0.4716 -3.7038 8 6 1.2805 0.1465 -4.8976 9 6 -0.2341 -0.0488 -4.9919 10 6 -0.5603 -1.5425 -4.9331 11 8 -1.9781 -1.7209 -4.9368 12 6 2.0311 -0.1905 -6.1988 13 7 1.8489 1.2333 -6.5518 14 6 1.8032 1.9313 -7.7289 15 1 1.7056 3.0068 -7.7157 16 6 1.8824 1.2565 -8.9395 17 7 1.8645 -0.0593 -8.9617 18 14 2.0145 2.2161 -10.5367 19 1 3.4435 2.3460 -10.9194 20 1 1.2785 1.4978 -11.6080 21 1 1.4266 3.5672 -10.3526 22 6 1.7335 1.5998 -5.1269 23 6 2.0400 -0.7212 1.2492 24 6 1.0327 -1.5532 2.0453 25 6 1.5400 -0.2226 2.6065 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.9703 1.4236 -0.0004 30 1 1.6767 -1.7489 -1.2492 31 1 3.1299 -0.7208 -1.2495 32 1 2.4825 -1.2123 -3.7944 33 1 -0.7187 0.4619 -4.1599 34 1 -0.5959 0.3653 -5.9330 35 1 -0.1288 -2.0431 -5.7999 36 1 -0.1428 -1.9699 -4.0215 37 1 -2.2583 -2.6458 -4.9014 38 1 3.0718 -0.4752 -6.0445 39 1 1.4928 -0.8783 -6.8509 40 1 1.9195 -0.5309 -9.8077 41 1 0.9580 2.3387 -4.9247 42 1 2.6857 1.8427 -4.6554 43 1 3.0647 -1.0888 1.1944 44 1 0.0066 -1.5871 1.6789 45 1 1.3946 -2.4680 2.5146 46 1 2.2356 -0.2624 3.4447 47 1 0.8474 0.6191 2.6094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485403181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:19 Heat of formation + Delta-G solvation = -78.367038 kcal Electronic energy + Delta-G solvation = -27581.404927 eV Core-core repulsion = 23766.119656 eV Total energy + Delta-G solvation = -3815.285270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56768 -40.31272 -38.76733 -37.69595 -36.26914 -35.18364 -33.79597 -32.57888 -31.76003 -29.24595 -28.55251 -26.83059 -25.43433 -24.55418 -23.28948 -23.16815 -21.51605 -20.50598 -20.05032 -18.78255 -18.48832 -18.18375 -17.30439 -17.16005 -16.69384 -16.59790 -16.36138 -15.89922 -15.68070 -15.36809 -15.00400 -14.87168 -14.56346 -14.32814 -13.87476 -13.65033 -13.35575 -13.30382 -13.19264 -12.97356 -12.79825 -12.68148 -12.55518 -12.48522 -12.23772 -12.03177 -12.01068 -11.74971 -11.70726 -11.36760 -11.30894 -11.02918 -10.96418 -10.87835 -10.79051 -10.27856 -9.91255 -8.94488 -7.92814 -5.26647 1.45327 1.46336 1.55520 1.87763 2.20883 2.49780 2.86570 3.17021 3.25217 3.38480 3.59680 3.63930 3.67620 3.77267 4.05719 4.12186 4.14157 4.22794 4.27432 4.35042 4.41920 4.45974 4.50425 4.68308 4.72683 4.73932 4.82966 4.86679 4.90163 4.99176 5.06597 5.07511 5.09372 5.14136 5.19536 5.25286 5.33677 5.34462 5.48313 5.53930 5.82056 5.92043 6.79049 6.89987 6.92681 7.02554 7.54060 7.56385 8.50393 9.22434 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.003303 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.117590 B = 8475.895193 C = 9136.082347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.179 3.821 3 O -0.564 6.564 4 C -0.157 4.157 5 C 0.507 3.493 6 O -0.553 6.553 7 N -0.711 5.711 8 C 0.161 3.839 9 C -0.087 4.087 10 C 0.094 3.906 11 O -0.594 6.594 12 C 0.164 3.836 13 N -0.633 5.633 14 C -0.239 4.239 15 H 0.076 0.924 16 C -0.057 4.057 17 N -0.943 5.943 18 Si 0.977 3.023 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.273 1.273 22 C 0.128 3.872 23 C -0.183 4.183 24 C -0.171 4.171 25 C -0.175 4.175 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.380 0.620 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.413 0.587 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.251 0.749 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.125 0.875 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -10.330 21.437 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.138 3.862 3 O -0.371 6.371 4 C -0.197 4.197 5 C 0.295 3.705 6 O -0.430 6.430 7 N -0.365 5.365 8 C 0.073 3.927 9 C -0.126 4.126 10 C 0.017 3.983 11 O -0.402 6.402 12 C 0.038 3.962 13 N -0.360 5.360 14 C -0.367 4.367 15 H 0.093 0.907 16 C -0.251 4.251 17 N -0.591 5.591 18 Si 0.805 3.195 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.198 1.198 22 C 0.002 3.998 23 C -0.201 4.201 24 C -0.208 4.208 25 C -0.212 4.212 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.228 0.772 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.250 0.750 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.246 0.754 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.143 0.857 44 H 0.117 0.883 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.762 -8.807 21.160 22.933 hybrid contribution 1.010 -0.194 -1.287 1.647 sum 1.773 -9.000 19.873 21.888 Atomic orbital electron populations 1.22074 0.94015 1.02331 1.02669 1.20310 0.94043 0.81271 0.90543 1.86703 1.26992 1.26510 1.96892 1.22447 1.04348 1.01879 0.90988 1.21160 0.80005 0.84346 0.84969 1.90696 1.38837 1.26798 1.86635 1.46019 1.48195 1.37758 1.04525 1.22052 0.92463 0.93350 0.84859 1.21155 0.93511 0.96828 1.01136 1.21943 0.80953 0.95141 1.00299 1.86443 1.22732 1.33317 1.97708 1.22576 0.96155 0.87716 0.89729 1.45963 1.84397 1.05410 1.00191 1.19290 1.43365 0.90803 0.83252 0.90659 1.25526 1.02546 0.96757 1.00271 1.69947 1.57085 1.06629 1.25396 0.85093 0.77448 0.77814 0.79166 1.21203 1.21694 1.19830 1.22834 0.97190 0.95693 0.84115 1.22981 1.00434 1.04616 0.92085 1.23199 0.99384 0.95263 1.02976 1.22889 1.03991 0.97979 0.96332 0.89977 0.93048 0.92263 0.77198 0.85604 0.86019 0.75015 0.92227 0.93583 0.93653 0.91604 0.75384 0.94692 0.91764 0.93972 0.95027 0.94120 0.85708 0.88349 0.87171 0.87741 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 7.18 71.98 0.52 -3.03 16 2 C 0.18 3.40 0.80 -10.80 -0.01 3.39 16 3 O -0.56 -13.66 11.85 -131.52 -1.56 -15.22 16 4 C -0.16 -2.53 4.95 29.85 0.15 -2.39 16 5 C 0.51 13.62 7.05 87.66 0.62 14.24 16 6 O -0.55 -20.15 11.37 14.41 0.16 -19.98 16 7 N -0.71 -19.25 4.49 -427.53 -1.92 -21.17 16 8 C 0.16 6.08 0.67 5.36 0.00 6.09 16 9 C -0.09 -3.47 4.82 30.60 0.15 -3.33 16 10 C 0.09 2.96 6.85 71.98 0.49 3.45 16 11 O -0.59 -18.26 13.66 -148.98 -2.03 -20.29 16 12 C 0.16 7.39 6.89 86.44 0.60 7.99 16 13 N -0.63 -33.33 3.54 -715.46 -2.53 -35.87 16 14 C -0.24 -13.81 10.69 84.04 0.90 -12.92 16 15 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 16 C -0.06 -3.26 5.49 84.87 0.47 -2.79 16 17 N -0.94 -55.29 11.31 21.65 0.25 -55.05 16 18 Si 0.98 46.15 29.56 68.60 2.03 48.18 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.13 5.80 7.51 86.48 0.65 6.45 16 23 C -0.18 -2.41 5.32 -10.80 -0.06 -2.47 16 24 C -0.17 -2.04 9.66 30.62 0.30 -1.75 16 25 C -0.17 -2.48 9.86 30.62 0.30 -2.18 16 26 H 0.08 1.50 6.73 -2.39 -0.02 1.48 16 27 H 0.05 1.19 6.96 -2.39 -0.02 1.18 16 28 H 0.06 1.85 5.51 -2.38 -0.01 1.84 16 29 H 0.38 6.32 9.05 -74.05 -0.67 5.65 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.41 8.29 8.71 -92.71 -0.81 7.48 16 33 H 0.06 2.51 7.13 -2.39 -0.02 2.49 16 34 H 0.05 2.21 8.02 -2.39 -0.02 2.19 16 35 H 0.05 1.47 7.59 -2.39 -0.02 1.45 16 36 H 0.07 1.67 7.56 -2.39 -0.02 1.65 16 37 H 0.40 7.47 9.12 -74.06 -0.68 6.79 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 3.22 6.32 -2.39 -0.02 3.21 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.03 1.53 8.10 -2.38 -0.02 1.51 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.10 1.27 5.89 -2.38 -0.01 1.25 16 45 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.43 7.28 -2.39 -0.02 1.42 16 Total: -1.00 -77.63 371.96 -1.69 -79.32 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -1.15 Total: 29.31 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.07 Total: 10.77 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -4.21 Total: -112.08 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -3.43 Total: -55.49 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -77.63 -1.69 -79.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485403181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.949 kcal (2) G-P(sol) polarization free energy of solvation -77.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds