Wall clock time and date at job start Fri Apr 10 2020 18:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99920 * 2 1 4 4 O 1.20824 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99851 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47042 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.46804 * 304.99435 * 6 5 3 8 8 C 1.53003 * 109.47308 * 64.99635 * 6 5 3 9 9 C 1.50704 * 109.47211 * 184.99591 * 6 5 3 10 10 O 1.21284 * 119.99731 * 0.02562 * 9 6 5 11 11 N 1.34775 * 119.99946 * 179.97438 * 9 6 5 12 12 C 1.46501 * 119.99550 * 180.02562 * 11 9 6 13 13 C 1.53006 * 109.47077 * 180.02562 * 12 11 9 14 14 C 1.53350 * 109.41355 * 295.12943 * 13 12 11 15 15 C 1.53194 * 109.14857 * 178.67407 * 14 13 12 16 16 N 1.46934 * 108.89214 * 54.57312 * 15 14 13 17 17 C 1.36935 * 120.62776 * 126.34278 * 16 15 14 18 18 H 1.08003 * 120.00334 * 331.82288 * 17 16 15 19 19 C 1.38816 * 120.00109 * 151.82327 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.07479 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.07501 * 19 17 16 22 22 H 1.48500 * 109.47341 * 59.99642 * 21 19 17 23 23 H 1.48496 * 109.47062 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46651 * 299.99824 * 21 19 17 25 25 C 1.46917 * 118.73910 * 306.32295 * 16 15 14 26 26 C 1.53038 * 109.46329 * 174.99754 * 13 12 11 27 27 H 1.08989 * 109.47008 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46861 * 300.00559 * 1 2 3 29 29 H 1.08996 * 109.46907 * 59.99534 * 1 2 3 30 30 H 1.08995 * 109.47424 * 59.99279 * 5 3 2 31 31 H 1.09000 * 109.47216 * 299.99621 * 5 3 2 32 32 H 1.08998 * 109.46776 * 180.02562 * 8 6 5 33 33 H 1.08994 * 109.46803 * 300.00346 * 8 6 5 34 34 H 1.09000 * 109.46829 * 60.00084 * 8 6 5 35 35 H 0.96993 * 120.00098 * 0.02562 * 11 9 6 36 36 H 1.08999 * 109.47676 * 60.00357 * 12 11 9 37 37 H 1.08999 * 109.47116 * 299.99867 * 12 11 9 38 38 H 1.09005 * 109.45975 * 55.02482 * 13 12 11 39 39 H 1.08992 * 109.69166 * 58.70660 * 14 13 12 40 40 H 1.09002 * 109.47268 * 298.50861 * 14 13 12 41 41 H 1.08993 * 109.58759 * 294.71698 * 15 14 13 42 42 H 1.09001 * 109.58865 * 174.43210 * 15 14 13 43 43 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.58812 * 173.39821 * 25 16 15 45 45 H 1.09004 * 109.58911 * 293.67958 * 25 16 15 46 46 H 1.09007 * 109.49142 * 61.43184 * 26 13 12 47 47 H 1.08995 * 109.49863 * 301.33713 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5376 3.2574 -0.8429 8 6 3.5605 3.4044 1.3062 9 6 5.4999 2.8225 -0.1254 10 8 6.1570 1.8063 -0.2062 11 7 6.1108 4.0237 -0.1479 12 6 7.5686 4.1017 -0.2693 13 6 8.0025 5.5690 -0.2697 14 6 7.4500 6.2635 -1.5203 15 6 7.8599 7.7395 -1.4978 16 7 9.3195 7.8257 -1.3527 17 6 10.0672 8.5517 -2.2409 18 1 9.7233 8.6823 -3.2564 19 6 11.2674 9.1200 -1.8362 20 7 11.5320 9.2553 -0.5540 21 14 12.5066 9.6926 -3.1112 22 1 11.8880 10.7343 -3.9699 23 1 13.6966 10.2578 -2.4259 24 1 12.9206 8.5402 -3.9514 25 6 9.9614 7.1185 -0.2363 26 6 9.5308 5.6488 -0.2707 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 3.9557 0.7809 -0.8907 31 1 3.9564 0.7807 0.8892 32 1 3.8692 4.4498 1.3056 33 1 2.4759 3.3462 1.3961 34 1 4.0231 2.8891 2.1480 35 1 5.5852 4.8363 -0.0837 36 1 7.8816 3.6298 -1.2007 37 1 8.0314 3.5866 0.5724 38 1 7.6137 6.0629 0.6208 39 1 6.3628 6.1881 -1.5322 40 1 7.8580 5.7862 -2.4112 41 1 7.3790 8.2395 -0.6572 42 1 7.5565 8.2172 -2.4294 43 1 12.3704 9.6527 -0.2712 44 1 11.0448 7.1843 -0.3366 45 1 9.6538 7.5695 0.7072 46 1 9.9191 5.1769 -1.1735 47 1 9.9226 5.1342 0.6066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343627899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:09 Heat of formation + Delta-G solvation = -121.281732 kcal Electronic energy + Delta-G solvation = -26089.894751 eV Core-core repulsion = 22272.748560 eV Total energy + Delta-G solvation = -3817.146191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.02606 -39.89605 -37.89556 -37.02467 -35.02329 -34.54105 -32.82555 -30.82391 -29.80313 -29.34786 -27.35984 -26.88802 -24.60562 -23.51709 -22.23575 -21.38995 -20.94862 -19.94285 -19.08919 -18.29390 -17.27890 -16.90694 -16.74325 -16.26552 -15.89590 -15.62838 -14.86064 -14.59714 -14.22142 -13.91911 -13.71770 -13.61347 -13.48532 -13.34695 -13.18286 -12.92349 -12.46348 -12.37356 -12.32081 -12.30548 -11.88391 -11.59707 -11.45677 -11.34382 -11.17019 -10.98577 -10.75821 -10.71887 -10.51790 -10.26476 -10.23155 -9.99267 -9.82831 -9.55378 -9.43667 -9.02022 -8.46602 -6.67086 -5.79144 -3.21539 1.83324 2.26539 2.54908 3.22429 3.38378 3.44201 3.45591 4.13999 4.49377 4.49954 4.56562 4.70166 4.72686 4.78334 5.00659 5.11388 5.13378 5.21427 5.24637 5.31162 5.37027 5.40981 5.49900 5.59716 5.67921 5.84578 5.86038 5.92296 6.03186 6.07567 6.13409 6.31225 6.40725 6.45334 6.59303 6.67815 6.75430 6.80487 6.97189 7.35544 7.36667 7.46647 7.65465 7.79184 8.13988 8.45398 9.21519 9.84987 10.41709 11.29402 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.039434 B = 0.002133 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.878685 B =13125.476599 C =13291.223449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.505 6.505 5 C -0.096 4.096 6 C -0.100 4.100 7 H 0.108 0.892 8 C -0.153 4.153 9 C 0.517 3.483 10 O -0.546 6.546 11 N -0.720 5.720 12 C 0.123 3.877 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.171 3.829 26 C -0.133 4.133 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.088 0.912 45 H 0.018 0.982 46 H 0.057 0.943 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.294 -16.255 3.525 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.393 6.393 5 C -0.134 4.134 6 C -0.122 4.122 7 H 0.126 0.874 8 C -0.210 4.210 9 C 0.302 3.698 10 O -0.423 6.423 11 N -0.371 5.371 12 C 0.000 4.000 13 C -0.109 4.109 14 C -0.167 4.167 15 C 0.018 3.982 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.045 3.955 26 C -0.172 4.172 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.036 0.964 46 H 0.076 0.924 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.874 -16.585 3.538 25.374 hybrid contribution 0.210 0.788 -0.584 1.003 sum -18.664 -15.797 2.954 24.630 Atomic orbital electron populations 1.23279 0.76204 1.03763 1.02628 1.86523 1.23547 1.33487 1.84055 1.23799 0.92181 0.81306 0.72045 1.90652 1.67332 1.36095 1.45232 1.21166 0.86810 0.97935 1.07477 1.21086 0.92825 0.95955 1.02296 0.87445 1.21942 1.03573 1.00737 0.94740 1.20373 0.89542 0.83677 0.76168 1.90710 1.66960 1.34713 1.49953 1.46073 1.08928 1.08146 1.73983 1.21607 0.78552 0.98052 1.01834 1.21370 0.97984 0.92507 0.99044 1.22131 0.98070 0.99183 0.97281 1.20886 0.86393 0.92274 0.98607 1.44036 0.99945 1.56122 1.31382 1.19139 1.02213 1.25869 0.91014 0.91814 1.25048 1.00365 0.98518 0.95748 1.70020 1.24452 1.47038 1.13267 0.86368 0.80996 0.78500 0.80892 1.20908 1.21641 1.21035 1.20763 0.99494 0.85767 0.89428 1.22171 0.92832 1.01639 1.00591 0.88067 0.91828 0.91804 0.86612 0.86812 0.91591 0.89944 0.92210 0.76339 0.91550 0.91745 0.91307 0.93435 0.92178 0.96618 0.92922 0.93589 0.89425 0.96435 0.92393 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.04 10.57 -39.27 -0.41 -3.46 16 3 C 0.46 4.26 7.67 36.00 0.28 4.53 16 4 O -0.51 -5.59 13.72 -18.75 -0.26 -5.85 16 5 C -0.10 -0.81 4.63 -27.89 -0.13 -0.94 16 6 C -0.10 -0.91 2.37 -91.77 -0.22 -1.12 16 7 H 0.11 0.92 7.96 -51.93 -0.41 0.51 16 8 C -0.15 -1.26 8.83 37.16 0.33 -0.93 16 9 C 0.52 6.13 7.15 -10.98 -0.08 6.06 16 10 O -0.55 -8.32 15.92 5.55 0.09 -8.23 16 11 N -0.72 -8.25 5.17 -60.29 -0.31 -8.56 16 12 C 0.12 1.67 5.07 -4.04 -0.02 1.65 16 13 C -0.09 -1.38 2.19 -90.42 -0.20 -1.57 16 14 C -0.13 -2.04 5.27 -26.45 -0.14 -2.18 16 15 C 0.14 2.92 6.50 -3.71 -0.02 2.89 16 16 N -0.59 -14.53 2.99 -172.32 -0.52 -15.05 16 17 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 18 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 19 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 20 N -0.90 -26.03 11.20 55.49 0.62 -25.41 16 21 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 C 0.17 3.98 5.30 -3.72 -0.02 3.96 16 26 C -0.13 -2.41 5.36 -26.61 -0.14 -2.55 16 27 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.12 0.96 7.95 -51.93 -0.41 0.55 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.49 7.57 -51.93 -0.39 0.10 16 33 H 0.08 0.73 5.96 -51.93 -0.31 0.42 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 3.86 7.07 -40.82 -0.29 3.57 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.63 7.16 -51.93 -0.37 0.25 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -32.25 375.57 -7.65 -39.90 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.96 Total: 0.42 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 0.47 Total: 3.99 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.21 Total: -49.01 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.58 Total: -17.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.25 -7.65 -39.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343627899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.385 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds