Wall clock time and date at job start Fri Apr 10 2020 18:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99920 * 2 1 4 4 O 1.20824 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99851 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47042 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.46804 * 304.99435 * 6 5 3 8 8 C 1.53003 * 109.47308 * 64.99635 * 6 5 3 9 9 C 1.50704 * 109.47211 * 184.99591 * 6 5 3 10 10 O 1.21284 * 119.99731 * 0.02562 * 9 6 5 11 11 N 1.34775 * 119.99946 * 179.97438 * 9 6 5 12 12 C 1.46501 * 119.99550 * 180.02562 * 11 9 6 13 13 C 1.53006 * 109.47077 * 180.02562 * 12 11 9 14 14 C 1.53350 * 109.41355 * 295.12943 * 13 12 11 15 15 C 1.53194 * 109.14857 * 178.67407 * 14 13 12 16 16 N 1.46934 * 108.89214 * 54.57312 * 15 14 13 17 17 C 1.36935 * 120.62776 * 126.34278 * 16 15 14 18 18 H 1.08003 * 120.00334 * 331.82288 * 17 16 15 19 19 C 1.38816 * 120.00109 * 151.82327 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.07479 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.07501 * 19 17 16 22 22 H 1.48500 * 109.47341 * 59.99642 * 21 19 17 23 23 H 1.48496 * 109.47062 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46651 * 299.99824 * 21 19 17 25 25 C 1.46917 * 118.73910 * 306.32295 * 16 15 14 26 26 C 1.53038 * 109.46329 * 174.99754 * 13 12 11 27 27 H 1.08989 * 109.47008 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46861 * 300.00559 * 1 2 3 29 29 H 1.08996 * 109.46907 * 59.99534 * 1 2 3 30 30 H 1.08995 * 109.47424 * 59.99279 * 5 3 2 31 31 H 1.09000 * 109.47216 * 299.99621 * 5 3 2 32 32 H 1.08998 * 109.46776 * 180.02562 * 8 6 5 33 33 H 1.08994 * 109.46803 * 300.00346 * 8 6 5 34 34 H 1.09000 * 109.46829 * 60.00084 * 8 6 5 35 35 H 0.96993 * 120.00098 * 0.02562 * 11 9 6 36 36 H 1.08999 * 109.47676 * 60.00357 * 12 11 9 37 37 H 1.08999 * 109.47116 * 299.99867 * 12 11 9 38 38 H 1.09005 * 109.45975 * 55.02482 * 13 12 11 39 39 H 1.08992 * 109.69166 * 58.70660 * 14 13 12 40 40 H 1.09002 * 109.47268 * 298.50861 * 14 13 12 41 41 H 1.08993 * 109.58759 * 294.71698 * 15 14 13 42 42 H 1.09001 * 109.58865 * 174.43210 * 15 14 13 43 43 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.58812 * 173.39821 * 25 16 15 45 45 H 1.09004 * 109.58911 * 293.67958 * 25 16 15 46 46 H 1.09007 * 109.49142 * 61.43184 * 26 13 12 47 47 H 1.08995 * 109.49863 * 301.33713 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5376 3.2574 -0.8429 8 6 3.5605 3.4044 1.3062 9 6 5.4999 2.8225 -0.1254 10 8 6.1570 1.8063 -0.2062 11 7 6.1108 4.0237 -0.1479 12 6 7.5686 4.1017 -0.2693 13 6 8.0025 5.5690 -0.2697 14 6 7.4500 6.2635 -1.5203 15 6 7.8599 7.7395 -1.4978 16 7 9.3195 7.8257 -1.3527 17 6 10.0672 8.5517 -2.2409 18 1 9.7233 8.6823 -3.2564 19 6 11.2674 9.1200 -1.8362 20 7 11.5320 9.2553 -0.5540 21 14 12.5066 9.6926 -3.1112 22 1 11.8880 10.7343 -3.9699 23 1 13.6966 10.2578 -2.4259 24 1 12.9206 8.5402 -3.9514 25 6 9.9614 7.1185 -0.2363 26 6 9.5308 5.6488 -0.2707 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 3.9557 0.7809 -0.8907 31 1 3.9564 0.7807 0.8892 32 1 3.8692 4.4498 1.3056 33 1 2.4759 3.3462 1.3961 34 1 4.0231 2.8891 2.1480 35 1 5.5852 4.8363 -0.0837 36 1 7.8816 3.6298 -1.2007 37 1 8.0314 3.5866 0.5724 38 1 7.6137 6.0629 0.6208 39 1 6.3628 6.1881 -1.5322 40 1 7.8580 5.7862 -2.4112 41 1 7.3790 8.2395 -0.6572 42 1 7.5565 8.2172 -2.4294 43 1 12.3704 9.6527 -0.2712 44 1 11.0448 7.1843 -0.3366 45 1 9.6538 7.5695 0.7072 46 1 9.9191 5.1769 -1.1735 47 1 9.9226 5.1342 0.6066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343627899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:08 Heat of formation + Delta-G solvation = -141.205818 kcal Electronic energy + Delta-G solvation = -26090.758724 eV Core-core repulsion = 22272.748560 eV Total energy + Delta-G solvation = -3818.010164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.75049 -40.83755 -39.36093 -37.72517 -36.41646 -35.33696 -34.40840 -32.50180 -31.39983 -30.08126 -28.43795 -27.80544 -26.04898 -24.68098 -23.76729 -22.65625 -21.96414 -20.98127 -20.47991 -19.06825 -18.63967 -17.96301 -17.55362 -17.17699 -16.88909 -16.73025 -16.51639 -15.76044 -15.41409 -15.29107 -14.98552 -14.87007 -14.65236 -14.38445 -14.05650 -13.96172 -13.80082 -13.78249 -13.34461 -13.00486 -12.97008 -12.93753 -12.78782 -12.54651 -12.29202 -12.23678 -12.13921 -12.01636 -11.83055 -11.76652 -11.60099 -11.48827 -11.23655 -11.08579 -10.76413 -10.51326 -10.04646 -8.65529 -7.86521 -5.31295 1.14409 1.46554 1.49108 1.55598 1.61414 1.64315 2.33294 2.51944 3.27823 3.43250 3.72818 3.79526 3.86767 3.91111 3.96292 4.01225 4.11523 4.31823 4.34342 4.35785 4.53845 4.55880 4.60601 4.66975 4.71827 4.73326 4.75862 4.84396 4.87829 4.95461 5.02530 5.03666 5.15766 5.23735 5.30366 5.32210 5.40254 5.45114 5.48765 5.56745 5.67045 5.80841 6.40953 6.55072 6.70348 7.16901 7.22910 7.89498 8.39940 9.19397 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.039434 B = 0.002133 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.878685 B =13125.476599 C =13291.223449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.468 3.532 4 O -0.526 6.526 5 C -0.095 4.095 6 C -0.092 4.092 7 H 0.116 0.884 8 C -0.148 4.148 9 C 0.520 3.480 10 O -0.580 6.580 11 N -0.713 5.713 12 C 0.136 3.864 13 C -0.078 4.078 14 C -0.114 4.114 15 C 0.139 3.861 16 N -0.612 5.612 17 C -0.262 4.262 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.280 1.280 25 C 0.177 3.823 26 C -0.122 4.122 27 H 0.128 0.872 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.413 0.587 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.018 0.982 42 H 0.050 0.950 43 H 0.249 0.751 44 H 0.050 0.950 45 H -0.001 1.001 46 H 0.049 0.951 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.019 -17.347 3.221 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.313 3.687 4 O -0.416 6.416 5 C -0.132 4.132 6 C -0.113 4.113 7 H 0.134 0.866 8 C -0.206 4.206 9 C 0.307 3.693 10 O -0.460 6.460 11 N -0.365 5.365 12 C 0.012 3.988 13 C -0.097 4.097 14 C -0.153 4.153 15 C 0.014 3.986 16 N -0.336 5.336 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.580 5.580 21 Si 0.793 3.207 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.206 1.206 25 C 0.051 3.949 26 C -0.162 4.162 27 H 0.146 0.854 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.017 0.983 46 H 0.068 0.932 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.647 -17.683 3.225 27.375 hybrid contribution 0.667 1.117 -0.480 1.387 sum -19.980 -16.567 2.745 26.100 Atomic orbital electron populations 1.23543 0.74701 1.05617 1.02649 1.86512 1.25083 1.33036 1.83711 1.23833 0.92298 0.81223 0.71389 1.90643 1.67826 1.36735 1.46389 1.21158 0.86517 0.97715 1.07844 1.21034 0.90557 0.96567 1.03129 0.86575 1.21914 1.03179 1.01291 0.94198 1.20775 0.90476 0.83011 0.75048 1.90702 1.67922 1.35872 1.51493 1.45948 1.08053 1.08787 1.73669 1.21277 0.79896 0.96184 1.01424 1.21202 0.95613 0.93853 0.99052 1.21985 1.00330 0.95852 0.97157 1.21077 0.83897 0.95198 0.98475 1.44322 1.01857 1.56236 1.31158 1.19463 1.02780 1.25427 0.91608 0.91835 1.25782 1.02125 0.99381 0.97425 1.70171 1.24579 1.48356 1.14937 0.85378 0.78541 0.78114 0.78647 1.20124 1.22032 1.20595 1.20574 0.97351 0.88722 0.88275 1.21970 0.95289 0.97809 1.01085 0.85397 0.91743 0.91875 0.86476 0.86276 0.90561 0.90441 0.92078 0.74952 0.92463 0.91777 0.90480 0.89654 0.93135 0.96437 0.93170 0.94151 0.93148 0.98340 0.93186 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.37 -5.64 10.57 -51.47 -0.54 -6.19 16 3 C 0.47 7.89 7.67 71.23 0.55 8.44 16 4 O -0.53 -10.85 13.72 21.97 0.30 -10.55 16 5 C -0.09 -1.45 4.63 29.85 0.14 -1.31 16 6 C -0.09 -1.45 2.37 -11.54 -0.03 -1.48 16 7 H 0.12 1.68 7.96 -2.39 -0.02 1.67 16 8 C -0.15 -2.09 8.83 71.98 0.64 -1.46 16 9 C 0.52 11.13 7.15 87.66 0.63 11.76 16 10 O -0.58 -16.70 15.92 -3.04 -0.05 -16.75 16 11 N -0.71 -14.25 5.17 -463.04 -2.39 -16.64 16 12 C 0.14 3.37 5.07 86.38 0.44 3.81 16 13 C -0.08 -2.22 2.19 -10.66 -0.02 -2.25 16 14 C -0.11 -3.40 5.27 30.78 0.16 -3.23 16 15 C 0.14 5.44 6.50 86.36 0.56 6.00 16 16 N -0.61 -30.25 2.99 -699.10 -2.09 -32.35 16 17 C -0.26 -14.43 9.58 84.03 0.81 -13.63 16 18 H 0.06 3.42 7.89 -2.91 -0.02 3.39 16 19 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 20 N -0.93 -55.31 11.20 21.65 0.24 -55.07 16 21 Si 0.96 45.04 29.59 68.60 2.03 47.07 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 C 0.18 8.34 5.30 86.36 0.46 8.80 16 26 C -0.12 -4.34 5.36 30.67 0.16 -4.18 16 27 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 29 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.12 1.78 7.95 -2.39 -0.02 1.76 16 31 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 0.91 7.57 -2.39 -0.02 0.89 16 33 H 0.08 1.22 5.96 -2.39 -0.01 1.21 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.41 6.41 7.07 -92.71 -0.66 5.76 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.09 1.92 7.16 -2.39 -0.02 1.90 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.05 2.74 6.06 -2.39 -0.01 2.73 16 45 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 46 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -70.40 375.57 3.89 -66.51 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.30 Total: 13.69 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.10 Total: 10.27 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.24 Total: -104.05 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.29 Total: -33.49 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.40 3.89 -66.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343627899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.696 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds